BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00030061
         (351 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003555735.1| PREDICTED: pentatricopeptide repeat-containi...    58   7e-07
ref|XP_002269531.1| PREDICTED: pentatricopeptide repeat-containi...    57   2e-06
ref|XP_002521865.1| pentatricopeptide repeat-containing protein,...    57   2e-06
ref|XP_002273494.2| PREDICTED: pentatricopeptide repeat-containi...    56   3e-06
gb|AFK45134.1| unknown [Lotus japonicus]                               55   6e-06

>ref|XP_003555735.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
           chloroplastic-like [Glycine max]
          Length = 609

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
 Frame = -1

Query: 249 PSVSRSNFGSFSVNVAGSQLPSLLEQGATKELQTT--EIDKSFADAQQNVVSK---DNLN 85
           PS     F  F  N + S  P L E+ ++    T    +D +FA   Q   SK   +NLN
Sbjct: 32  PSHHHRRFFFFHANFSASPTPILEEEPSSSNTPTIIHVVDVNFAADVQKQYSKPEPENLN 91

Query: 84  DFICGLSKDRRTEALAFEYYQKAKAQPE 1
           +F+CGL +D +T+ LAF+YYQ+ K +PE
Sbjct: 92  EFLCGLFEDPKTKELAFDYYQRLKERPE 119


>ref|XP_002269531.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
           chloroplastic-like [Vitis vinifera]
          Length = 603

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
 Frame = -1

Query: 315 SISPCKEI--LPKSSNGSSKILSFPSVSRSNFGSFSVNVAGSQLPSLLEQGA-TKELQTT 145
           S S C++   L  +   + K+L   S+  SN     VN +    P + E+      L   
Sbjct: 8   STSNCRQPHKLKLTFTSTCKLLPIFSLPCSNSRYLFVNNSSYSSPIVAEESTHDHHLPVI 67

Query: 144 EIDKSFADAQQNVVSKDNLNDFICGLSKDRRTEALAFEYYQKAKAQPE 1
           E+D    D        +NLNDF+CGL +D R+E LAF+YYQK K +PE
Sbjct: 68  ELDVELPDLTPK---DENLNDFLCGLFRDPRSEELAFDYYQKVKERPE 112


>ref|XP_002521865.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538903|gb|EEF40501.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 449

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
 Frame = -1

Query: 345 ISNTKEWSFTSISPCKE----ILPKSSNGSSKILSFPSVSRSNFGSFSVNVAGSQLPSLL 178
           IS + +WS  SI  C++    I+   S  +   LS P  S  N   F +N +    P +L
Sbjct: 3   ISRSPDWSVASIKSCRKPHKIIVFTPSWKTLPFLSLPCFS--NLSLFQLNASSCPSP-IL 59

Query: 177 EQGATKELQTTEIDKSFADAQQ-NVVSKDNLNDFICGLSKDRRTEALAFEYYQKAKAQPE 1
           E+ +T      ++D    ++Q+  +    +LN F+CG+ +D RTE LA+EYY+KA  + E
Sbjct: 60  EEPSTN-FPVIQLDFRVQNSQEYQIPDSKSLNKFLCGILRDPRTEHLAYEYYKKATERQE 118


>ref|XP_002273494.2| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
           chloroplastic-like [Vitis vinifera]
          Length = 609

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
 Frame = -1

Query: 315 SISPCKEI--LPKSSNGSSKILSFPSVSRSNFGSFSVNVAGSQLPSLLEQGATKE--LQT 148
           S S C++   L  +   + K+L   S+  SN     VN +    P + E+       L  
Sbjct: 8   STSNCRQPHRLKLTFTSTCKLLPIFSLPCSNSRYLFVNNSSYSSPIVAEESTHDHHHLPV 67

Query: 147 TEIDKSFADAQQNVVSKDNLNDFICGLSKDRRTEALAFEYYQKAKAQPE 1
            E+D    D        +NLNDF+CGL +D R+E LAF+YYQK K +PE
Sbjct: 68  IELDVELPDLTPK---DENLNDFLCGLFRDPRSEELAFDYYQKVKERPE 113


>gb|AFK45134.1| unknown [Lotus japonicus]
          Length = 208

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
 Frame = -1

Query: 345 ISNTKEWSFTSI-SPCKEILPKSSNGSSKILSFPSVSRSNFGSFSVNVAGSQLPSLLEQG 169
           IS + +WS     +     +P     SS  +S  S S SN   FS N + S  P +LE+ 
Sbjct: 3   ISCSADWSLACTRTHVHSFIPTCHFPSSYNVS--SYSSSNPRFFSANSSASPTP-ILEEA 59

Query: 168 ATKELQTTEIDK----SFADAQQNVVSKDNLNDFICGLSKDRRTEALAFEYYQKAKAQP 4
           +       ++D     + +  Q +    +NLN+F+CGL +D +TE LAF+YYQ+ K +P
Sbjct: 60  SNSNTPMLDVDNVNNIAGSHQQYSNPGTENLNEFLCGLFQDPKTEELAFDYYQRLKDRP 118