BLASTX nr result
ID: Coptis21_contig00030049
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00030049
(744 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus ... 105 8e-27
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera] 114 8e-27
ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ... 113 1e-26
ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|2... 108 5e-24
ref|XP_003523538.1| PREDICTED: F-box protein SKIP23-like [Glycin... 109 6e-24
>ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus communis]
gi|223551319|gb|EEF52805.1| ubiquitin-protein ligase,
putative [Ricinus communis]
Length = 398
Score = 105 bits (262), Expect(2) = 8e-27
Identities = 67/180 (37%), Positives = 96/180 (53%), Gaps = 9/180 (5%)
Frame = +2
Query: 131 DVINYKDKFYAVRSGGAVFALDANDPSSALSFVAPDALVGKN--YLVESSGELLQVFRHL 304
DVI FYAV G + D + S +SF+ G + YLV S ELL V R+L
Sbjct: 214 DVIFVNGMFYAVNKAGQIVICDISSDSPRVSFMETPRQAGGDMQYLVNSGDELLLVTRYL 273
Query: 305 DYMEEGSRDDF-----YFTAGFDVYKL--KGSEWIEVKSLGERSLFLGDNYSLSLPVSDM 463
D E D Y T F+V++L G +W+ + +LG+++LF+G+N SLSL +D
Sbjct: 274 DLEYEFDHPDMEPHLIYRTIRFEVFRLDWNGPQWLRMSTLGDKALFIGENSSLSLSATDF 333
Query: 464 PGCRPNSIYFTDDNSENYLVDGYGPCDIGVFNLEDKSIEPLYPMESKTFARSPIFIQPTM 643
GC N IY+TDD + +G D+G+F L D++IEPL P + F SP+ P +
Sbjct: 334 SGCMGNCIYYTDDYLDANYDGHFGDHDLGIFKLCDETIEPL-PCYPRNFT-SPLQWSPPL 391
Score = 41.2 bits (95), Expect(2) = 8e-27
Identities = 17/40 (42%), Positives = 31/40 (77%)
Frame = +1
Query: 1 VLSANPLSEPNFVAMAIHNELNRLSFFKSGDKTWTPLHSA 120
VLS++PL + NFV +AI N+ + L++ ++GDK+W+ + +A
Sbjct: 169 VLSSSPLKDNNFVVIAILNQTDDLAYCRNGDKSWSLVENA 208
>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
Length = 389
Score = 114 bits (284), Expect(2) = 8e-27
Identities = 73/176 (41%), Positives = 96/176 (54%), Gaps = 7/176 (3%)
Frame = +2
Query: 131 DVINYKDKFYAVRSGGAVFALDANDPSSALSFVAPDALVGKN--YLVESSGELLQVFRHL 304
DVI ++ FYAV G++ D + S +S + G + YLVES ELL V R+L
Sbjct: 211 DVIFHRGLFYAVNKYGSIAVCDVSGSSPRVSIIEMPQQFGGDLQYLVESGEELLLVTRYL 270
Query: 305 DYMEEGSRDD---FYFTAGFDVYKL--KGSEWIEVKSLGERSLFLGDNYSLSLPVSDMPG 469
D + D Y T F V +L K W V SLG+R+LFLG+N SLSL D PG
Sbjct: 271 DLTYDVEXDQTSLIYRTTRFQVCRLDSKAPRWEVVSSLGDRALFLGENLSLSLSSVDFPG 330
Query: 470 CRPNSIYFTDDNSENYLVDGYGPCDIGVFNLEDKSIEPLYPMESKTFARSPIFIQP 637
C+ N IY+TDD SE+ G D+G+FNLED SIEPL + P+++ P
Sbjct: 331 CKGNCIYYTDDYSEDNYDGIGGEQDLGIFNLEDGSIEPLPCSHFRIRWPPPLWVTP 386
Score = 32.7 bits (73), Expect(2) = 8e-27
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 1 VLSANPLSEPNFVAMAIHNELNRLSFFKSGDKTWTPLHSATYY 129
+LS++P + +F+A+ I N+ L+ + D +WT L A Y
Sbjct: 166 ILSSSPANGSDFIAVVILNQTGDLALCRKSDDSWTFLEDAQSY 208
>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
Length = 389
Score = 113 bits (283), Expect(2) = 1e-26
Identities = 73/176 (41%), Positives = 96/176 (54%), Gaps = 7/176 (3%)
Frame = +2
Query: 131 DVINYKDKFYAVRSGGAVFALDANDPSSALSFVAPDALVGKN--YLVESSGELLQVFRHL 304
DVI ++ FYAV G++ D + S +S + G + YLVES ELL V R+L
Sbjct: 211 DVIFHRGLFYAVNKYGSIAVCDVSGSSPRVSIIEMPQQFGGDLQYLVESGEELLLVTRYL 270
Query: 305 DYMEEGSRDD---FYFTAGFDVYKL--KGSEWIEVKSLGERSLFLGDNYSLSLPVSDMPG 469
D + D Y T F V +L K W V SLG+R+LFLG+N SLSL D PG
Sbjct: 271 DLTYDVEPDQTSLIYRTTRFQVCRLDLKAPRWEVVSSLGDRALFLGENLSLSLSSVDFPG 330
Query: 470 CRPNSIYFTDDNSENYLVDGYGPCDIGVFNLEDKSIEPLYPMESKTFARSPIFIQP 637
C+ N IY+TDD SE+ G D+G+FNLED SIEPL + P+++ P
Sbjct: 331 CKGNCIYYTDDYSEDNYDGIGGEQDLGIFNLEDGSIEPLPCSHFRIRWPPPLWVTP 386
Score = 32.7 bits (73), Expect(2) = 1e-26
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 1 VLSANPLSEPNFVAMAIHNELNRLSFFKSGDKTWTPLHSATYY 129
+LS++P + +F+A+ I N+ L+ + D +WT L A Y
Sbjct: 166 ILSSSPANGSDFIAVVILNQTGDLALCRKSDDSWTFLEDAQSY 208
>ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|222842400|gb|EEE79947.1|
predicted protein [Populus trichocarpa]
Length = 393
Score = 108 bits (270), Expect(2) = 5e-24
Identities = 74/178 (41%), Positives = 96/178 (53%), Gaps = 9/178 (5%)
Frame = +2
Query: 131 DVINYKDKFYAVRSGGAVFALDANDPSSALSFVAPDALVGKN--YLVESSGELLQVFRHL 304
DVI + FYAV G + D N S +SF+ +G + YLV S LL V R+L
Sbjct: 215 DVIYFNGLFYAVNKAGQIVVCDVNGNSPKVSFIETPRQIGGDMQYLVSSGDGLLLVTRYL 274
Query: 305 DYMEEGSRDDF-YFTAGFDVYKL--KGSEWIEVKSLGERSLFLGDNYSLSLPVSDMPGCR 475
D E D F Y TA F+V+KL G W V SLG+ LF+G+N SL+L S + GC
Sbjct: 275 DLDVEF--DIFIYKTARFEVFKLDLNGPRWERVTSLGDMMLFIGENSSLALSASGLSGCM 332
Query: 476 PNSIYFTDDNSENYLVDGYGPCDIGVFNLEDKSIEPL--YPMESKTFAR--SPIFIQP 637
+ IY+TDD S N G D+G+F L D SIEPL YP S + + P++I P
Sbjct: 333 GDCIYYTDDYSANNYDGHIGEHDLGIFKLSDGSIEPLPCYPRNSYSRLQWPPPLWISP 390
Score = 28.9 bits (63), Expect(2) = 5e-24
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +1
Query: 1 VLSANPLSEPN--FVAMAIHNELNRLSFFKSGDKTW 102
V+S++PL + FVAMAI L++ K+GD+ W
Sbjct: 168 VMSSSPLEKKGDFFVAMAILCSTGDLAYCKNGDECW 203
>ref|XP_003523538.1| PREDICTED: F-box protein SKIP23-like [Glycine max]
Length = 393
Score = 109 bits (272), Expect(2) = 6e-24
Identities = 73/185 (39%), Positives = 96/185 (51%), Gaps = 16/185 (8%)
Frame = +2
Query: 131 DVINYKDKFYAVRSGGAVFALDANDPS-----SALSFVAPDALVGK-NYLVESSGELLQV 292
DV+NY F+AV GG + DA + S + P G +Y V S+G++L +
Sbjct: 206 DVVNYNGLFFAVSKGGTIAVCDAGEGCFPPRVSIIQTTTPFGFAGDIHYAVFSAGDMLLL 265
Query: 293 FRHLDYM---EEGSRDDF-YFTAGFDVYKLKGS--EWIEVKSLGERSLFLGDNYSLSLPV 454
R LD G D Y T GF+V+K+ W V++LGER LF+G N SLS
Sbjct: 266 IRVLDQDFSDHAGEESDLVYRTVGFEVFKMNWGLLTWQRVETLGERVLFVGGNSSLSFCA 325
Query: 455 SDMPGCRPNSIYFTDDNSENYLVDGYGPCDIGVFNLEDKSIEPLYPMESKTFAR----SP 622
SD GC + IYFTDD SE+ D G D+GVF L DKSIEPL + +R P
Sbjct: 326 SDFVGCSADCIYFTDDYSESNDDDACGKHDLGVFRLRDKSIEPLPCFNQNSCSRLRWPLP 385
Query: 623 IFIQP 637
I++ P
Sbjct: 386 IWVSP 390
Score = 27.7 bits (60), Expect(2) = 6e-24
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 1 VLSANPLSEPNFVAMAIHNELNRLSFFKSGDKTW 102
VLSA+P +F A+AI + N L+F ++G +W
Sbjct: 159 VLSASPTLNDDFAALAIVGQ-NNLAFCRNGYDSW 191