BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00030015
         (311 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282330.1| PREDICTED: protein CLP1 homolog [Vitis vinif...   128   4e-28
ref|XP_003592786.1| Macrophage erythroblast attacher [Medicago t...   124   1e-26
ref|XP_002323828.1| predicted protein [Populus trichocarpa] gi|2...   124   1e-26
ref|NP_187119.1| CLP-like protein 3 [Arabidopsis thaliana] gi|42...   123   1e-26
ref|XP_002517467.1| cleavage/polyadenylation factor ia subunit c...   121   5e-26

>ref|XP_002282330.1| PREDICTED: protein CLP1 homolog [Vitis vinifera]
           gi|296087785|emb|CBI35041.3| unnamed protein product
           [Vitis vinifera]
          Length = 427

 Score =  128 bits (322), Expect = 4e-28
 Identities = 57/75 (76%), Positives = 71/75 (94%), Gaps = 1/75 (1%)
 Frame = +3

Query: 90  IRKINIEKECELRIEVAES-PVKLRLLSGTAEIYGTELPPEIWLTIPPHLKFAVFTWYGA 266
           IR++ +EKECELR+EV+E+ P++LRLL+GTAEI+GTE+PPEIWL+ PP LKFAVFTWYGA
Sbjct: 7   IRQVKLEKECELRVEVSENAPLRLRLLNGTAEIFGTEIPPEIWLSFPPRLKFAVFTWYGA 66

Query: 267 TVELDGITETDYTAD 311
           T+E+DGITETDYTAD
Sbjct: 67  TIEMDGITETDYTAD 81


>ref|XP_003592786.1| Macrophage erythroblast attacher [Medicago truncatula]
           gi|355481834|gb|AES63037.1| Macrophage erythroblast
           attacher [Medicago truncatula]
          Length = 873

 Score =  124 bits (310), Expect = 1e-26
 Identities = 54/74 (72%), Positives = 66/74 (89%)
 Frame = +3

Query: 90  IRKINIEKECELRIEVAESPVKLRLLSGTAEIYGTELPPEIWLTIPPHLKFAVFTWYGAT 269
           I+++ +EKECELRIEV++SP++LRLL+G AEI+GTELPPEIWL  PP LKFAVFTWYGAT
Sbjct: 19  IKQVKLEKECELRIEVSDSPLRLRLLNGNAEIFGTELPPEIWLNFPPRLKFAVFTWYGAT 78

Query: 270 VELDGITETDYTAD 311
           +E+DG  ET YTAD
Sbjct: 79  IEMDGTPETGYTAD 92


>ref|XP_002323828.1| predicted protein [Populus trichocarpa] gi|222866830|gb|EEF03961.1|
           predicted protein [Populus trichocarpa]
          Length = 437

 Score =  124 bits (310), Expect = 1e-26
 Identities = 56/74 (75%), Positives = 68/74 (91%), Gaps = 1/74 (1%)
 Frame = +3

Query: 93  RKINIEKECELRIEVA-ESPVKLRLLSGTAEIYGTELPPEIWLTIPPHLKFAVFTWYGAT 269
           R++ +EKE ELRIEVA ++P++LRLL+GTAEI+GTELPP+IWLT PPH KFAVFTWYGAT
Sbjct: 13  RQVKLEKESELRIEVANDTPLRLRLLNGTAEIFGTELPPQIWLTFPPHFKFAVFTWYGAT 72

Query: 270 VELDGITETDYTAD 311
           +E+DG TETDYTAD
Sbjct: 73  IEMDGSTETDYTAD 86


>ref|NP_187119.1| CLP-like protein 3 [Arabidopsis thaliana]
           gi|42572251|ref|NP_974220.1| CLP-like protein 3
           [Arabidopsis thaliana]
           gi|6175171|gb|AAF04897.1|AC011437_12 unknown protein
           [Arabidopsis thaliana] gi|17065580|gb|AAL32944.1|
           Unknown protein [Arabidopsis thaliana]
           gi|22136146|gb|AAM91151.1| unknown protein [Arabidopsis
           thaliana] gi|332640597|gb|AEE74118.1| CLP-like protein 3
           [Arabidopsis thaliana] gi|332640598|gb|AEE74119.1|
           CLP-like protein 3 [Arabidopsis thaliana]
          Length = 444

 Score =  123 bits (309), Expect = 1e-26
 Identities = 51/75 (68%), Positives = 69/75 (92%)
 Frame = +3

Query: 87  NIRKINIEKECELRIEVAESPVKLRLLSGTAEIYGTELPPEIWLTIPPHLKFAVFTWYGA 266
           N++++ +E+E ELRIEV+E P++LR+++GTAEI+G+ELPPEIW T PP +KFAVFTWYGA
Sbjct: 22  NLKQVKLERESELRIEVSEEPLRLRVVNGTAEIFGSELPPEIWRTFPPRMKFAVFTWYGA 81

Query: 267 TVELDGITETDYTAD 311
           T+E+DG+TETDYTAD
Sbjct: 82  TIEMDGVTETDYTAD 96


>ref|XP_002517467.1| cleavage/polyadenylation factor ia subunit clp1p, putative [Ricinus
           communis] gi|223543478|gb|EEF45009.1|
           cleavage/polyadenylation factor ia subunit clp1p,
           putative [Ricinus communis]
          Length = 431

 Score =  121 bits (304), Expect = 5e-26
 Identities = 56/88 (63%), Positives = 72/88 (81%), Gaps = 1/88 (1%)
 Frame = +3

Query: 51  VAIGXXXXXXXXNIRKINIEKECELRIEVA-ESPVKLRLLSGTAEIYGTELPPEIWLTIP 227
           +A G         ++++ +E+E ELRIEVA ++P++LRLL+GTAEI+GTELPPE+WLT P
Sbjct: 1   MAYGGAAMTAASTMKQVKLERESELRIEVANDTPLRLRLLNGTAEIFGTELPPEMWLTFP 60

Query: 228 PHLKFAVFTWYGATVELDGITETDYTAD 311
           P LKFAVFTWYGAT+E+DG TETDYTAD
Sbjct: 61  PRLKFAVFTWYGATIEMDGTTETDYTAD 88