BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00029699
         (408 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN68838.1| hypothetical protein VITISV_030956 [Vitis vinifera]    65   7e-09
gb|AAD37019.2| putative non-LTR retrolelement reverse transcript...    64   1e-08
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...    62   5e-08
emb|CCA66235.1| hypothetical protein [Beta vulgaris subsp. vulga...    62   6e-08
emb|CAN65484.1| hypothetical protein VITISV_029474 [Vitis vinifera]    61   8e-08

>emb|CAN68838.1| hypothetical protein VITISV_030956 [Vitis vinifera]
          Length = 1881

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
 Frame = -2

Query: 407  WNIAVFGNVEQNME---KAQIEFDEAQIRVDAEPDNETLLDNFILKEQSLNSATVNKNTM 237
            WN A FG + +  E    A + FD  +       +   LL    +K+  L    + +   
Sbjct: 1117 WNKASFGELSKRKEDILSALVNFDSLEQEGGLSHE---LLAQRAIKKGELEELILREEIH 1173

Query: 236  LKQKCKDKWVDESERNSSYFHALHKVKQGKSFITELQKDNGDIMKDQDQIKEYIVEYYTR 57
             +QK + KWV E + NS +FH +   ++ + FI EL+ +NG +M + + IKE I+ Y+ +
Sbjct: 1174 WRQKARVKWVKEGDCNSKFFHKVANGRRNRKFIKELENENGQMMNNSESIKEEILRYFEK 1233

Query: 56   KF 51
             +
Sbjct: 1234 LY 1235


>gb|AAD37019.2| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 855

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 36/123 (29%), Positives = 66/123 (53%), Gaps = 4/123 (3%)
 Frame = -2

Query: 407  WNIAVFGNVEQNMEKAQIEFDEAQIRVDAEPDNETLLDNFILKEQSL----NSATVNKNT 240
            WN  VFG+V +  E    E    Q  ++    N+T  DN + KE+ L    +     +  
Sbjct: 697  WNREVFGDVNRRKESLMNEIKVVQELLEI---NQT--DNLLSKEEELIKEFDVVLEQEEV 751

Query: 239  MLKQKCKDKWVDESERNSSYFHALHKVKQGKSFITELQKDNGDIMKDQDQIKEYIVEYYT 60
            +  QK ++KWV+  +RN+ YFH +  V++ ++ I  L+ D+G  +  Q ++++  V+YY+
Sbjct: 752  LWFQKSREKWVELGDRNTKYFHTMTVVRRRRNRIEMLKADDGSWVSQQQELEKMAVDYYS 811

Query: 59   RKF 51
            R +
Sbjct: 812  RLY 814


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 33/110 (30%), Positives = 59/110 (53%)
 Frame = -2

Query: 407 WNIAVFGNVEQNMEKAQIEFDEAQIRVDAEPDNETLLDNFILKEQSLNSATVNKNTMLKQ 228
           WN  VFGN+   + +A+ +  + Q  ++    N+ L++   + + +L+ A   + T   +
Sbjct: 44  WNKDVFGNILIQVTQAEKKLSDIQNHINTSGHNDNLMNAEKIAQTNLDLALQKQETFWVE 103

Query: 227 KCKDKWVDESERNSSYFHALHKVKQGKSFITELQKDNGDIMKDQDQIKEY 78
           K K KW    +RN+ YFH L K+K     I+ L+K   +I+ DQ +I E+
Sbjct: 104 KAKLKWHVGGDRNTKYFHRLTKIKNKTKIISSLRKGE-EILTDQTRISEH 152


>emb|CCA66235.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1380

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 34/125 (27%), Positives = 71/125 (56%), Gaps = 5/125 (4%)
 Frame = -2

Query: 407 WNIAVFGNVEQNMEKAQIEFDEAQIRVDAEPDNETLLDNFILKEQS-----LNSATVNKN 243
           WN  VFGN+E N+++ + E ++       +  NE  LD+F L+++      L S    K 
Sbjct: 281 WNEKVFGNIEANIKQLEHEINQLD-----KISNERDLDSFELEKKKKAQVDLWSWMKTKE 335

Query: 242 TMLKQKCKDKWVDESERNSSYFHALHKVKQGKSFITELQKDNGDIMKDQDQIKEYIVEYY 63
           +   Q+ + KW+ + +RN+ +FH +  +++ ++ IT ++  NGD + + ++IK   ++Y+
Sbjct: 336 SYWSQQSRIKWLKQGDRNTKFFHVVASIRKHRNSITSIEV-NGDKISEPEKIKLEAMKYF 394

Query: 62  TRKFQ 48
            + F+
Sbjct: 395 RKAFK 399


>emb|CAN65484.1| hypothetical protein VITISV_029474 [Vitis vinifera]
          Length = 1882

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 33/119 (27%), Positives = 57/119 (47%)
 Frame = -2

Query: 407  WNIAVFGNVEQNMEKAQIEFDEAQIRVDAEPDNETLLDNFILKEQSLNSATVNKNTMLKQ 228
            WN A FG + +  E    +             +  LL    LK+  L    + +    +Q
Sbjct: 951  WNKASFGELSKRKEDILSDLVNFDSLEQEGGLSHELLAQRALKKGELEELILREEIHWRQ 1010

Query: 227  KCKDKWVDESERNSSYFHALHKVKQGKSFITELQKDNGDIMKDQDQIKEYIVEYYTRKF 51
            K + KWV E + NS +FH +   ++ + FI EL+ +NG +M + + IKE I+ Y+ + +
Sbjct: 1011 KARVKWVKEGDCNSRFFHKVANGRRNRKFIKELENENGLMMNNSESIKEEILRYFEKLY 1069