BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00029418
         (266 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC12735.1| putative retrovirus-related polyprotein [Lithospe...   118   4e-25
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...   107   1e-21
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja...   103   1e-20
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        103   1e-20
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc...   103   1e-20

>gb|AAC12735.1| putative retrovirus-related polyprotein [Lithospermum
           erythrorhizon]
          Length = 244

 Score =  118 bits (296), Expect = 4e-25
 Identities = 56/90 (62%), Positives = 70/90 (77%), Gaps = 2/90 (2%)
 Frame = +2

Query: 2   LLGSTVIGDVAVGTCGN--DSECTKLWHMRLGHMSQNGLSELCKRGLLKDLEKPSMEFCE 175
           L+G+ V GD+AVG  G+   +ECT +WHMRLGHMS+ GLS L  +GLLK+++K  MEFCE
Sbjct: 85  LVGTMVTGDLAVGVVGHKDQTECTMIWHMRLGHMSEKGLSLLSGQGLLKNMKKSCMEFCE 144

Query: 176 HCVYGKQCRVKFGTRKHKMRGILDYVHTDI 265
           H VYGK  R+KF T KHK RG+LDYVHTD+
Sbjct: 145 HWVYGKTHRLKFFTSKHKSRGLLDYVHTDL 174


>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score =  107 bits (266), Expect = 1e-21
 Identities = 51/88 (57%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
 Frame = +2

Query: 8   GSTVIGDVAVGTCGN--DSECTKLWHMRLGHMSQNGLSELCKRGLLKDLEKPSMEFCEHC 181
           GSTV+G VA  T  +  D+E TKLWHMRLGH  +  L    K+GLLK  +   +EFCEHC
Sbjct: 337 GSTVVGTVAAATSSSKKDAEATKLWHMRLGHAGEKSLQIFTKQGLLKGTKACKLEFCEHC 396

Query: 182 VYGKQCRVKFGTRKHKMRGILDYVHTDI 265
           V GKQ RVKFGT  H  +GILDYVH+D+
Sbjct: 397 VLGKQRRVKFGTAIHNTKGILDYVHSDV 424


>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
           gi|20087076|gb|AAM10749.1|AC112514_2 Putative
           retroelement [Oryza sativa Japonica Group]
          Length = 1225

 Score =  103 bits (258), Expect = 1e-20
 Identities = 49/89 (55%), Positives = 64/89 (71%), Gaps = 1/89 (1%)
 Frame = +2

Query: 2   LLGSTVIGDVA-VGTCGNDSECTKLWHMRLGHMSQNGLSELCKRGLLKDLEKPSMEFCEH 178
           L G+T++G+VA V    ++S+ T LWHMRLGHMS+ GL+EL KRGLL       ++FCEH
Sbjct: 372 LRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIKKLKFCEH 431

Query: 179 CVYGKQCRVKFGTRKHKMRGILDYVHTDI 265
           C++GK  RVKF T  H   GILDYVH+D+
Sbjct: 432 CIFGKHKRVKFNTSTHTTEGILDYVHSDL 460


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  103 bits (258), Expect = 1e-20
 Identities = 49/89 (55%), Positives = 64/89 (71%), Gaps = 1/89 (1%)
 Frame = +2

Query: 2   LLGSTVIGDVA-VGTCGNDSECTKLWHMRLGHMSQNGLSELCKRGLLKDLEKPSMEFCEH 178
           L G+T++G+VA V    ++S+ T LWHMRLGHMS+ GL+EL KRGLL       ++FCEH
Sbjct: 411 LQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSISKLKFCEH 470

Query: 179 CVYGKQCRVKFGTRKHKMRGILDYVHTDI 265
           C++GK  RVKF T  H   GILDYVH+D+
Sbjct: 471 CIFGKHKRVKFNTSTHTTEGILDYVHSDL 499


>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1262

 Score =  103 bits (258), Expect = 1e-20
 Identities = 49/89 (55%), Positives = 64/89 (71%), Gaps = 1/89 (1%)
 Frame = +2

Query: 2   LLGSTVIGDVA-VGTCGNDSECTKLWHMRLGHMSQNGLSELCKRGLLKDLEKPSMEFCEH 178
           L G+T++G+VA V    ++S+ T LWHMRLGHMS+ GL+EL KRGLL       ++FCEH
Sbjct: 426 LRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIKKLKFCEH 485

Query: 179 CVYGKQCRVKFGTRKHKMRGILDYVHTDI 265
           C++GK  RVKF T  H   GILDYVH+D+
Sbjct: 486 CIFGKHKRVKFNTSTHTTEGILDYVHSDL 514