BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00029382
         (344 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002527112.1| pentatricopeptide repeat-containing protein,...   145   3e-33
ref|XP_002306730.1| predicted protein [Populus trichocarpa] gi|2...   142   3e-32
ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containi...   142   4e-32
ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   141   6e-32
ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containi...   139   2e-31

>ref|XP_002527112.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223533535|gb|EEF35275.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 364

 Score =  145 bits (366), Expect = 3e-33
 Identities = 71/108 (65%), Positives = 83/108 (76%)
 Frame = +3

Query: 12  DALDLFKRMGFEGLKRNEVTVLGALSACSQLGALGEGEAVYSFVKENGLDGNVQVCNAVI 191
           +AL LFKRM   G K NE+TVLGALSACSQLGA  EGE ++ +++   LD NVQVCNA I
Sbjct: 187 EALGLFKRMEVLGFKPNEITVLGALSACSQLGAFKEGEKIHEYIRSQKLDMNVQVCNAAI 246

Query: 192 DMYAKCGSVEKARNVFDSMNCSKSLVSWNTMIMGIAMHGHGADALELF 335
           DMYAKCG  +KA  VF+SM+C KSLV+WNTMIM  AMHG G  AL+LF
Sbjct: 247 DMYAKCGFADKAYLVFESMSCGKSLVTWNTMIMAFAMHGDGDKALKLF 294



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 32/108 (29%), Positives = 55/108 (50%)
 Frame = +3

Query: 12  DALDLFKRMGFEGLKRNEVTVLGALSACSQLGALGEGEAVYSFVKENGLDGNVQVCNAVI 191
           D+   +K M     K + +T    L AC+++ A  E   ++S +   G   +  +   ++
Sbjct: 86  DSFKWYKTMIRGSYKVDALTCSFVLKACARVLAFSESTQLHSHIVRKGFVADALLGTTLL 145

Query: 192 DMYAKCGSVEKARNVFDSMNCSKSLVSWNTMIMGIAMHGHGADALELF 335
           D+YAK G ++ A+ +FD M   K + SWN +I G A     ++AL LF
Sbjct: 146 DLYAKTGDLDSAQKMFDEM-IVKDIASWNALISGFAQGNKPSEALGLF 192


>ref|XP_002306730.1| predicted protein [Populus trichocarpa] gi|222856179|gb|EEE93726.1|
           predicted protein [Populus trichocarpa]
          Length = 578

 Score =  142 bits (358), Expect = 3e-32
 Identities = 67/110 (60%), Positives = 82/110 (74%)
 Frame = +3

Query: 12  DALDLFKRMGFEGLKRNEVTVLGALSACSQLGALGEGEAVYSFVKENGLDGNVQVCNAVI 191
           +AL LFKRM  +G K NE++VLGALSAC+QLG   EGE ++ ++K    D N QVCN VI
Sbjct: 189 EALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVCNVVI 248

Query: 192 DMYAKCGSVEKARNVFDSMNCSKSLVSWNTMIMGIAMHGHGADALELFNE 341
           DMYAKCG V+KA  VF+SM+C K +V+WNTMIM  AMHG G  ALELF +
Sbjct: 249 DMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEK 298



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 27/97 (27%), Positives = 55/97 (56%)
 Frame = +3

Query: 15  ALDLFKRMGFEGLKRNEVTVLGALSACSQLGALGEGEAVYSFVKENGLDGNVQVCNAVID 194
           AL+LF++M   G+  ++V+ L  L AC+  G + EG  +++ ++  G+  NV+   +V+D
Sbjct: 292 ALELFEKMDQSGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSMENCGVKPNVKHYGSVVD 351

Query: 195 MYAKCGSVEKARNVFDSMNCSKSLVSWNTMIMGIAMH 305
           +  + G + +A ++ +SM     +V W T++     H
Sbjct: 352 LLGRAGRLHEAYDIVNSMPTVPDIVLWQTLLGASRTH 388



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 31/108 (28%), Positives = 54/108 (50%)
 Frame = +3

Query: 12  DALDLFKRMGFEGLKRNEVTVLGALSACSQLGALGEGEAVYSFVKENGLDGNVQVCNAVI 191
           +A   +K M  +  K + +T    L AC+++ A  E   +++ +   G   +  +   ++
Sbjct: 88  NAFAWYKSMISKSRKVDALTCSFVLKACARVLARLESIQIHTHIVRKGFIADALLGTTLL 147

Query: 192 DMYAKCGSVEKARNVFDSMNCSKSLVSWNTMIMGIAMHGHGADALELF 335
           D+YAK G ++ A  VFD M   + + SWN +I G A      +AL LF
Sbjct: 148 DVYAKVGEIDSAEKVFDEM-VKRDIASWNALISGFAQGSKPTEALSLF 194


>ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Vitis vinifera]
          Length = 573

 Score =  142 bits (357), Expect = 4e-32
 Identities = 71/113 (62%), Positives = 85/113 (75%)
 Frame = +3

Query: 3   RARDALDLFKRMGFEGLKRNEVTVLGALSACSQLGALGEGEAVYSFVKENGLDGNVQVCN 182
           ++ +AL LF RM  EG K NE++VLGAL+ACSQLGAL  GE V++ V++  LD NVQVCN
Sbjct: 181 KSSEALALFNRMRAEGEKINEISVLGALAACSQLGALRAGEGVHACVRKMDLDINVQVCN 240

Query: 183 AVIDMYAKCGSVEKARNVFDSMNCSKSLVSWNTMIMGIAMHGHGADALELFNE 341
           AVIDMYAKCG  +K   VF +M C KS+V+WNTMIM  AMHG G  ALELF E
Sbjct: 241 AVIDMYAKCGFADKGFRVFSTMTCGKSVVTWNTMIMAFAMHGDGCRALELFEE 293



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 30/96 (31%), Positives = 53/96 (55%)
 Frame = +3

Query: 51  LKRNEVTVLGALSACSQLGALGEGEAVYSFVKENGLDGNVQVCNAVIDMYAKCGSVEKAR 230
           L  + +T   +L A ++  AL E   ++S +   G   ++ +   +ID YAKCG ++ A+
Sbjct: 96  LHPDALTFSFSLIASARALALSETSQIHSHLLRRGCHADILLGTTLIDAYAKCGDLDSAQ 155

Query: 231 NVFDSMNCSKSLVSWNTMIMGIAMHGHGADALELFN 338
            VFD +   + + +WN +I G+A     ++AL LFN
Sbjct: 156 RVFDEIPL-RDVAAWNALIAGLAQGSKSSEALALFN 190



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 27/99 (27%), Positives = 54/99 (54%)
 Frame = +3

Query: 15  ALDLFKRMGFEGLKRNEVTVLGALSACSQLGALGEGEAVYSFVKENGLDGNVQVCNAVID 194
           AL+LF+ MG   ++ + VT L  L AC+  G + EG  ++  +   G++ NV+   +V+D
Sbjct: 287 ALELFEEMGKTQVEMDSVTYLAVLCACNHAGLVEEGVRLFDEMVGRGVNRNVKHYGSVVD 346

Query: 195 MYAKCGSVEKARNVFDSMNCSKSLVSWNTMIMGIAMHGH 311
           +  + G + +A  + +SM     +V W +++     +G+
Sbjct: 347 LLGRAGRLGEAYRIINSMPIVPDVVLWQSLLGACKTYGN 385


>ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  141 bits (355), Expect = 6e-32
 Identities = 71/114 (62%), Positives = 86/114 (75%), Gaps = 1/114 (0%)
 Frame = +3

Query: 3   RARDALDLFKRMGFEG-LKRNEVTVLGALSACSQLGALGEGEAVYSFVKENGLDGNVQVC 179
           R  DA+  FKRM  +G L+ N VTV GAL ACSQLGAL EGE+V+ ++ E  LD NVQVC
Sbjct: 184 RPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLDSNVQVC 243

Query: 180 NAVIDMYAKCGSVEKARNVFDSMNCSKSLVSWNTMIMGIAMHGHGADALELFNE 341
           N VIDMYAKCGS++KA  VF++M C KSL++WNTMIM  AMHG G  AL+LF +
Sbjct: 244 NVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEK 297



 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 25/98 (25%), Positives = 58/98 (59%)
 Frame = +3

Query: 15  ALDLFKRMGFEGLKRNEVTVLGALSACSQLGALGEGEAVYSFVKENGLDGNVQVCNAVID 194
           ALDLF+++G  G+  + V+ L  L AC+  G + +G  +++ + + GL+ N++   +++D
Sbjct: 291 ALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQRGLEPNIKHYGSMVD 350

Query: 195 MYAKCGSVEKARNVFDSMNCSKSLVSWNTMIMGIAMHG 308
           +  + G +++A ++  S+    ++V W T++     +G
Sbjct: 351 LLGRAGRLKEAYDIVSSLP-FPNMVLWQTLLGACRTYG 387


>ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  139 bits (350), Expect = 2e-31
 Identities = 70/114 (61%), Positives = 86/114 (75%), Gaps = 1/114 (0%)
 Frame = +3

Query: 3   RARDALDLFKRMGFEG-LKRNEVTVLGALSACSQLGALGEGEAVYSFVKENGLDGNVQVC 179
           R  DA+  FKRM  +G L+ N VTV GAL ACSQLGAL EGE+V+ ++ E  L+ NVQVC
Sbjct: 184 RPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLNSNVQVC 243

Query: 180 NAVIDMYAKCGSVEKARNVFDSMNCSKSLVSWNTMIMGIAMHGHGADALELFNE 341
           N VIDMYAKCGS++KA  VF++M C KSL++WNTMIM  AMHG G  AL+LF +
Sbjct: 244 NVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEK 297



 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 25/98 (25%), Positives = 58/98 (59%)
 Frame = +3

Query: 15  ALDLFKRMGFEGLKRNEVTVLGALSACSQLGALGEGEAVYSFVKENGLDGNVQVCNAVID 194
           ALDLF+++G  G+  + V+ L  L AC+  G + +G  +++ + + GL+ N++   +++D
Sbjct: 291 ALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQRGLEPNIKHYGSMVD 350

Query: 195 MYAKCGSVEKARNVFDSMNCSKSLVSWNTMIMGIAMHG 308
           +  + G +++A ++  S+    ++V W T++     +G
Sbjct: 351 LLGRAGRLKEAYDIVSSLP-FPNMVLWQTLLGACRTYG 387