BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00029379
         (337 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAP43914.1| integrase [Gossypium raimondii]                         52   1e-10
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]               48   5e-10
gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]                  47   5e-10
gb|AAP43919.1| integrase [Gossypium hirsutum]                          44   3e-09
emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera]    45   3e-09

>gb|AAP43914.1| integrase [Gossypium raimondii]
          Length = 340

 Score = 52.4 bits (124), Expect(2) = 1e-10
 Identities = 31/68 (45%), Positives = 36/68 (52%)
 Frame = +3

Query: 3   HKPGKGNQAADALSHCVHALAMLHSHVPDFDSFHALYAADPDFASIYADCASHQGAMGMF 182
           +K GK N  ADALS     L+ LH+ +  F+    LYA D DFASIY  C    GA   F
Sbjct: 85  YKKGKDNIVADALSRRYTLLSTLHTKLLGFEYLKDLYATDSDFASIYDAC--EHGAFHKF 142

Query: 183 LLQDGLLF 206
              DG LF
Sbjct: 143 YKHDGYLF 150



 Score = 38.1 bits (87), Expect(2) = 1e-10
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +1

Query: 217 QLCVPCSPLRQTIISEVHSGALSGQFGIAKTMSSL 321
           +LC+P   +R+ ++ E HSG L G FG+ KT   L
Sbjct: 154 RLCLPKCSMRELLVREAHSGGLMGHFGVTKTYDVL 188


>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
          Length = 1887

 Score = 48.1 bits (113), Expect(2) = 5e-10
 Identities = 27/69 (39%), Positives = 37/69 (53%)
 Frame = +3

Query: 3    HKPGKGNQAADALSHCVHALAMLHSHVPDFDSFHALYAADPDFASIYADCASHQGAMGMF 182
            +K GK N  ADALS     L+ L + +  F+   +LYA D DF  IY+ C   + A G +
Sbjct: 1306 YKKGKDNVVADALSRRYVLLSSLDAKLLGFEHIKSLYANDSDFEKIYSSC--EKFAFGKY 1363

Query: 183  LLQDGLLFH 209
               DG LF+
Sbjct: 1364 YRHDGFLFY 1372



 Score = 40.4 bits (93), Expect(2) = 5e-10
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = +1

Query: 217  QLCVPCSPLRQTIISEVHSGALSGQFGIAKTMSSLR 324
            +LC+P S LR+  I E H G L G FG++KT+  ++
Sbjct: 1375 RLCIPNSSLRELFIREAHGGGLMGHFGVSKTIKVMQ 1410


>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
          Length = 1518

 Score = 46.6 bits (109), Expect(2) = 5e-10
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +3

Query: 3    HKPGKGNQAADALSHCVHALAMLHSHVPDFDSFHALYAADPDFASIY-ADCASHQGAMGM 179
            +K GK N  ADALS     L+++ + V  F+    LY  DPDF+  +      H+     
Sbjct: 1011 YKEGKKNVVADALSRRHSLLSVMSNRVLGFEFMKELYKEDPDFSEEWITQTEGHKNQGSK 1070

Query: 180  FLLQDGLLFHG 212
            +LLQ+G LF G
Sbjct: 1071 YLLQEGFLFQG 1081



 Score = 42.0 bits (97), Expect(2) = 5e-10
 Identities = 18/38 (47%), Positives = 24/38 (63%)
 Frame = +1

Query: 211  GPQLCVPCSPLRQTIISEVHSGALSGQFGIAKTMSSLR 324
            G +LCVP    R  +I EVHSG + G FG+ KT+  L+
Sbjct: 1081 GNKLCVPRGSYRDLLIREVHSGGMGGHFGVQKTLEILQ 1118


>gb|AAP43919.1| integrase [Gossypium hirsutum]
          Length = 334

 Score = 43.9 bits (102), Expect(2) = 3e-09
 Identities = 27/68 (39%), Positives = 34/68 (50%)
 Frame = +3

Query: 3   HKPGKGNQAADALSHCVHALAMLHSHVPDFDSFHALYAADPDFASIYADCASHQGAMGMF 182
           +K G  N  ADALS     +  L++ V  F+    LY  D DF+ IY +C     A   F
Sbjct: 85  YKIGNDNVVADALSRRYTLITTLNAKVLGFEHIKELYDDDTDFSHIYKNCG--HTAFEKF 142

Query: 183 LLQDGLLF 206
            L DGLLF
Sbjct: 143 YLVDGLLF 150



 Score = 42.4 bits (98), Expect(2) = 3e-09
 Identities = 17/36 (47%), Positives = 25/36 (69%)
 Frame = +1

Query: 217 QLCVPCSPLRQTIISEVHSGALSGQFGIAKTMSSLR 324
           +LC+P   +R+ +I E HSG L G FG+AKT+  L+
Sbjct: 154 RLCIPKCSMRELLIHEAHSGGLMGHFGVAKTLDILQ 189


>emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera]
          Length = 1173

 Score = 45.4 bits (106), Expect(2) = 3e-09
 Identities = 27/68 (39%), Positives = 36/68 (52%)
 Frame = +3

Query: 3   HKPGKGNQAADALSHCVHALAMLHSHVPDFDSFHALYAADPDFASIYADCASHQGAMGMF 182
           +K GK N   DALS     ++ L++ +  F+    LYA D DFAS+Y  C   + A G F
Sbjct: 707 YKQGKENIVVDALSRRYALVSTLNAKLLGFEYVKELYANDDDFASVYGAC--EKVAFGKF 764

Query: 183 LLQDGLLF 206
              DG LF
Sbjct: 765 YRLDGYLF 772



 Score = 40.4 bits (93), Expect(2) = 3e-09
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = +1

Query: 217 QLCVPCSPLRQTIISEVHSGALSGQFGIAKTMSSL 321
           +LCVP S +R+ ++ E H G L G FG+ KT+  L
Sbjct: 776 RLCVPNSSMRELLVREAHEGGLMGHFGVRKTLDVL 810