BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00029357
         (476 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    82   3e-14
ref|XP_002522208.1| hypothetical protein RCOM_1732210 [Ricinus c...    80   2e-13
gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                    73   2e-11
ref|XP_002531653.1| conserved hypothetical protein [Ricinus comm...    73   2e-11
ref|NP_001174960.1| Os06g0683500 [Oryza sativa Japonica Group] g...    72   6e-11

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 40/128 (31%), Positives = 74/128 (57%), Gaps = 1/128 (0%)
 Frame = -1

Query: 425  DLEVLHGLRLGTKQRRAPRILECYWADPPQGIIKVNTDGASRGNPGPSGWGASFRGNNGV 246
            D  +L    +  + R+   I+   W +P   ++KVNTDG+  G  G +  G  FR ++G 
Sbjct: 991  DSAILEEFSVSPRHRKYKDIILVLWKNPSPPLLKVNTDGSVVG--GLAACGGLFRDSSGS 1048

Query: 245  FLGAYAGGIGITTSYVAESHAIVEGIKKALDMGWKRIWIQSDSSAAIKAF-QANKVHWSI 69
            FLGA++  IG+ + + AE+ A +  ++ A   GW+ +W++SDS++A+  F  ++ V W +
Sbjct: 1049 FLGAFSCNIGLASVFHAETLAFILALEHAAHHGWRNLWLESDSTSALMIFSNSSLVQWLL 1108

Query: 68   KGLWNNVK 45
            +  W+N +
Sbjct: 1109 RNRWHNAQ 1116


>ref|XP_002522208.1| hypothetical protein RCOM_1732210 [Ricinus communis]
           gi|223538579|gb|EEF40183.1| hypothetical protein
           RCOM_1732210 [Ricinus communis]
          Length = 95

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 37/87 (42%), Positives = 53/87 (60%)
 Frame = -1

Query: 374 PRILECYWADPPQGIIKVNTDGASRGNPGPSGWGASFRGNNGVFLGAYAGGIGITTSYVA 195
           P+I    W  PP   IK+N++GA+RG PG +G G  FR   GV  G +   +  T ++VA
Sbjct: 2   PKIFTIKWHPPPPSWIKLNSNGATRGAPGTTGVGGLFRNCRGVVKGCFIVPLSTTYAFVA 61

Query: 194 ESHAIVEGIKKALDMGWKRIWIQSDSS 114
           E  A + GI KA + GW +IW++SDS+
Sbjct: 62  EIKAAIYGIDKAYNFGWNKIWLESDST 88


>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
 Frame = -1

Query: 389 KQRRAPRILECYWADPPQGIIKVNTDGASRGNPGPSGWGASFRGNNGVFLGAYAGGIGIT 210
           K  R     E  W  P  G +K+N DG+  G+P     G  FR +  +F GA+A  IG  
Sbjct: 233 KTNRVNPCREIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYA 292

Query: 209 TSYVAESHAIVEGIKKALDMGWKRIWIQSDSSAAIKAFQANK-VHWSIKGLWNN 51
           T+  AE  A +  I+KA ++    IWI++DS   I+AF  N  V W +   W+N
Sbjct: 293 TALEAEYSACMFAIEKAKELHLTNIWIETDSVNVIRAFHFNTGVPWKMHIRWHN 346


>ref|XP_002531653.1| conserved hypothetical protein [Ricinus communis]
           gi|223528711|gb|EEF30723.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 160

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 37/119 (31%), Positives = 63/119 (52%)
 Frame = -1

Query: 449 GSMENNTLDLEVLHGLRLGTKQRRAPRILECYWADPPQGIIKVNTDGASRGNPGPSGWGA 270
           G+M NNT   ++L  L +  K   AP I+  +W   P   IKVNTD ++ G+P  +  G 
Sbjct: 34  GTMFNNTSKFQILKSLHIAGKPSGAPSIISVFWRSSPLVWIKVNTDRSAFGSPRSASLGG 93

Query: 269 SFRGNNGVFLGAYAGGIGITTSYVAESHAIVEGIKKALDMGWKRIWIQSDSSAAIKAFQ 93
            F  + G   G +   I  + +++AE  A +  + KA + GW+++W++ DS   +  F+
Sbjct: 94  IFEISRGYPAGCFVFSICNSFAHIAELCAAMFVVLKAKEFGWRQLWLECDSMYVVHLFK 152


>ref|NP_001174960.1| Os06g0683500 [Oryza sativa Japonica Group]
           gi|52076651|dbj|BAD45551.1| hypothetical protein [Oryza
           sativa Japonica Group] gi|255677331|dbj|BAH93688.1|
           Os06g0683500 [Oryza sativa Japonica Group]
          Length = 240

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 38/100 (38%), Positives = 57/100 (57%)
 Frame = -1

Query: 404 LRLGTKQRRAPRILECYWADPPQGIIKVNTDGASRGNPGPSGWGASFRGNNGVFLGAYAG 225
           LRL      + RI    W  P +G +K+N DG+S+ + G +  G  +R ++G FL  YA 
Sbjct: 66  LRLRAYSSASARI----WRKPEEGWMKLNFDGSSKHSTGIASIGGVYRDHDGAFLLGYAE 121

Query: 224 GIGITTSYVAESHAIVEGIKKALDMGWKRIWIQSDSSAAI 105
            IG  TS VAE  A+  G++ A+  GW+R+W + DS A +
Sbjct: 122 RIGTATSSVAELAALRRGLELAVRNGWRRVWAEGDSKAVV 161