BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00029342
         (247 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF63169.1|AC010657_5 T5E21.13 [Arabidopsis thaliana]              139   3e-31
ref|NP_172917.1| splicing factor 3A subunit 1 [Arabidopsis thali...   139   3e-31
gb|AAL91182.1| splicing factor, putative [Arabidopsis thaliana]       139   3e-31
ref|XP_002528507.1| spliceosome associated protein, putative [Ri...   137   9e-31
ref|XP_002893817.1| swap (Suppressor-of-White-APricot)/surp doma...   137   1e-30

>gb|AAF63169.1|AC010657_5 T5E21.13 [Arabidopsis thaliana]
          Length = 1776

 Score =  139 bits (349), Expect = 3e-31
 Identities = 69/81 (85%), Positives = 70/81 (86%)
 Frame = -3

Query: 245  EHMRISLIDPKFKEQKDRTMAKIRETTLAHDDEMVSNIVGLARTRPDIFGTTEEEVSNAV 66
            EHMRISLIDPKFKEQKDR  AKIRETTLA DDE+  NIVGLAR RPDIFGTTEEEVSNAV
Sbjct: 1419 EHMRISLIDPKFKEQKDRMFAKIRETTLAQDDEIAKNIVGLARLRPDIFGTTEEEVSNAV 1478

Query: 65   KEVIEKKKDEHPMQVIWDGRT 3
            K  IEKKKDE P QVIWDG T
Sbjct: 1479 KAEIEKKKDEQPKQVIWDGHT 1499



 Score =  132 bits (331), Expect = 4e-29
 Identities = 68/81 (83%), Positives = 69/81 (85%)
 Frame = -3

Query: 245 EHMRISLIDPKFKEQKDRTMAKIRETTLAHDDEMVSNIVGLARTRPDIFGTTEEEVSNAV 66
           EHMRISLIDPKFKEQKDR  AKIRETTLA DDE+  NIVGLAR RPDIFGTTEEEVSNAV
Sbjct: 565 EHMRISLIDPKFKEQKDRMFAKIRETTLAQDDEIAKNIVGLARLRPDIFGTTEEEVSNAV 624

Query: 65  KEVIEKKKDEHPMQVIWDGRT 3
           K  IE KKDE P QVIWDG T
Sbjct: 625 KADIE-KKDEQPKQVIWDGHT 644


>ref|NP_172917.1| splicing factor 3A subunit 1 [Arabidopsis thaliana]
           gi|186478492|ref|NP_001117289.1| splicing factor 3A
           subunit 1 [Arabidopsis thaliana]
           gi|148887433|sp|Q8RXF1.2|SF3A1_ARATH RecName:
           Full=Probable splicing factor 3A subunit 1
           gi|110740977|dbj|BAE98583.1| putative splicing factor
           [Arabidopsis thaliana] gi|332191075|gb|AEE29196.1|
           splicing factor 3A subunit 1 [Arabidopsis thaliana]
           gi|332191076|gb|AEE29197.1| splicing factor 3A subunit 1
           [Arabidopsis thaliana]
          Length = 785

 Score =  139 bits (349), Expect = 3e-31
 Identities = 69/81 (85%), Positives = 70/81 (86%)
 Frame = -3

Query: 245 EHMRISLIDPKFKEQKDRTMAKIRETTLAHDDEMVSNIVGLARTRPDIFGTTEEEVSNAV 66
           EHMRISLIDPKFKEQKDR  AKIRETTLA DDE+  NIVGLAR RPDIFGTTEEEVSNAV
Sbjct: 428 EHMRISLIDPKFKEQKDRMFAKIRETTLAQDDEIAKNIVGLARLRPDIFGTTEEEVSNAV 487

Query: 65  KEVIEKKKDEHPMQVIWDGRT 3
           K  IEKKKDE P QVIWDG T
Sbjct: 488 KAEIEKKKDEQPKQVIWDGHT 508


>gb|AAL91182.1| splicing factor, putative [Arabidopsis thaliana]
          Length = 785

 Score =  139 bits (349), Expect = 3e-31
 Identities = 69/81 (85%), Positives = 70/81 (86%)
 Frame = -3

Query: 245 EHMRISLIDPKFKEQKDRTMAKIRETTLAHDDEMVSNIVGLARTRPDIFGTTEEEVSNAV 66
           EHMRISLIDPKFKEQKDR  AKIRETTLA DDE+  NIVGLAR RPDIFGTTEEEVSNAV
Sbjct: 428 EHMRISLIDPKFKEQKDRMFAKIRETTLAQDDEIAKNIVGLARLRPDIFGTTEEEVSNAV 487

Query: 65  KEVIEKKKDEHPMQVIWDGRT 3
           K  IEKKKDE P QVIWDG T
Sbjct: 488 KAEIEKKKDEQPKQVIWDGHT 508


>ref|XP_002528507.1| spliceosome associated protein, putative [Ricinus communis]
           gi|223532067|gb|EEF33876.1| spliceosome associated
           protein, putative [Ricinus communis]
          Length = 816

 Score =  137 bits (345), Expect = 9e-31
 Identities = 68/81 (83%), Positives = 71/81 (87%)
 Frame = -3

Query: 245 EHMRISLIDPKFKEQKDRTMAKIRETTLAHDDEMVSNIVGLARTRPDIFGTTEEEVSNAV 66
           EHMRISLIDPK+KEQK+R  AKIRETTLA DDE+  NIVGLARTRPDIFGTTEEEVSNAV
Sbjct: 437 EHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISRNIVGLARTRPDIFGTTEEEVSNAV 496

Query: 65  KEVIEKKKDEHPMQVIWDGRT 3
           K  IEKKKDE P QVIWDG T
Sbjct: 497 KAEIEKKKDEQPKQVIWDGHT 517


>ref|XP_002893817.1| swap (Suppressor-of-White-APricot)/surp domain-containing protein
           [Arabidopsis lyrata subsp. lyrata]
           gi|297339659|gb|EFH70076.1| swap
           (Suppressor-of-White-APricot)/surp domain-containing
           protein [Arabidopsis lyrata subsp. lyrata]
          Length = 778

 Score =  137 bits (344), Expect = 1e-30
 Identities = 68/79 (86%), Positives = 69/79 (87%)
 Frame = -3

Query: 245 EHMRISLIDPKFKEQKDRTMAKIRETTLAHDDEMVSNIVGLARTRPDIFGTTEEEVSNAV 66
           EHMRISLIDPKFKEQKDR  AKIRETTLA DDE+  NIVGLAR RPDIFGTTEEEVSNAV
Sbjct: 420 EHMRISLIDPKFKEQKDRMFAKIRETTLAQDDEIAKNIVGLARLRPDIFGTTEEEVSNAV 479

Query: 65  KEVIEKKKDEHPMQVIWDG 9
           K  IEKKKDE P QVIWDG
Sbjct: 480 KAEIEKKKDEQPKQVIWDG 498