BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00029311
         (1072 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vi...    74   2e-13
ref|XP_002320506.1| f-box family protein [Populus trichocarpa] g...    74   1e-11
ref|XP_002301588.1| f-box family protein [Populus trichocarpa] g...    75   4e-11
ref|XP_002517454.1| conserved hypothetical protein [Ricinus comm...    59   4e-11
ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus ...    74   8e-11

>ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vinifera]
           gi|147785390|emb|CAN68678.1| hypothetical protein
           VITISV_041941 [Vitis vinifera]
          Length = 409

 Score = 74.3 bits (181), Expect(2) = 2e-13
 Identities = 65/211 (30%), Positives = 96/211 (45%), Gaps = 11/211 (5%)
 Frame = +3

Query: 264 NEVQIFTLGSTSWRRKVGVVPKVLPRDSGILSAPIVYGSLHWITTSDNDESDPLKEGGSL 443
           +EVQ+ TLGS +WR  +G V   L R     S  +V G LHW+T                
Sbjct: 206 SEVQVLTLGSPTWR-SLGKVSYQLDRWP---SEALVNGRLHWVT---------------- 245

Query: 444 LIVSVYHRSKKKKSSNFITFHLGVEEFRFVPTPTLQLLKNSCYPYTLGVLEGHFSLMECS 623
                  R ++  +   ++F L  E+FR +P P    L      Y L VL G  S     
Sbjct: 246 -------RPRRYVTRFIVSFDLADEQFREIPKPDCGGLSRC--NYHLLVLGGCLSAAVHR 296

Query: 624 SEPYIQVWVMNKYNVKESWVNQFCIELDSLGG--RGLGMPYYY---------VKLLQVCK 770
           S   ++VWVM +Y+VKESW+ +F I      G  + +  P+           V+LL + K
Sbjct: 297 SNGKLEVWVMKEYDVKESWIKEFNIGAHLPKGLKQDVNRPHRIWRNAPKGRGVRLLCLLK 356

Query: 771 NGELLFVSGSKNLVSYNITSRKCRWVEIEGV 863
           NGE+L     + LVSYN    K + + ++G+
Sbjct: 357 NGEILLEYKGRVLVSYNPERGKFKDLTLKGL 387



 Score = 28.5 bits (62), Expect(2) = 2e-13
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +1

Query: 49  RNPIYMFNPITKQIGELPK-FTVPKHNVPGWVDEV*IVGKFLSGFGYH--DSIFKLVLVI 219
           ++ +Y+ NP T+   +LPK    P   V             + GFGYH    ++K+V V+
Sbjct: 140 KDAVYVHNPFTRDFKQLPKSLQYPDQEV-------------VFGFGYHPMTEVYKVVKVV 186

Query: 220 F 222
           +
Sbjct: 187 Y 187


>ref|XP_002320506.1| f-box family protein [Populus trichocarpa]
           gi|222861279|gb|EEE98821.1| f-box family protein
           [Populus trichocarpa]
          Length = 422

 Score = 73.6 bits (179), Expect(2) = 1e-11
 Identities = 67/217 (30%), Positives = 95/217 (43%), Gaps = 18/217 (8%)
 Frame = +3

Query: 264 NEVQIFTLGSTSWRRKVGVVPKVLPRDSGILSAPIVYGSLHWITTSDNDESDPLKEGGSL 443
           +EVQI TLG   WR    V  +++ R SG L    V G LHWI+                
Sbjct: 206 SEVQILTLGCPEWRSLGKVSYRLVRRASGAL----VNGRLHWISRP-------------- 247

Query: 444 LIVSVYHRSKKKKSSNFITFHLGVEEFRFVPTPTLQLLKNSCYPYTLGVLEGHFSLMECS 623
                    + K +   ++F L  E+FR V  P    L N C  Y L VL G  S     
Sbjct: 248 --------CRNKPARRLVSFDLTDEQFREVSKPDCGGL-NRCN-YHLVVLRGCLSAAVYC 297

Query: 624 SEPYIQVWVMNKYNVKESWVNQFCIEL------------------DSLGGRGLGMPYYYV 749
           +   +++WVM +YNVKESWV ++ I                    +S  GR +G      
Sbjct: 298 NYGRLEIWVMKEYNVKESWVKEYNIGAYMPKGLKQNQDRQLKIWKNSSNGRVVG------ 351

Query: 750 KLLQVCKNGELLFVSGSKNLVSYNITSRKCRWVEIEG 860
             L V KNGE+L    ++ LVSY+  + K + +E++G
Sbjct: 352 -ALCVLKNGEILLEYKNRVLVSYDPKNGKFKDIELQG 387



 Score = 23.1 bits (48), Expect(2) = 1e-11
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +1

Query: 43  LPRNPIYMFNPITKQIGELPK-FTVPKHNVPGWVDEV*IVGKFLSGFGYHDSI--FKLVL 213
           L  + +Y++NP T    ELPK    P   V             +SGFG++     +K++ 
Sbjct: 138 LYNDSLYIYNPFTGCYKELPKSLQYPDQEV-------------VSGFGFNPKTKEYKVIR 184

Query: 214 VIF 222
           +++
Sbjct: 185 IVY 187


>ref|XP_002301588.1| f-box family protein [Populus trichocarpa]
           gi|222843314|gb|EEE80861.1| f-box family protein
           [Populus trichocarpa]
          Length = 408

 Score = 74.7 bits (182), Expect = 4e-11
 Identities = 65/210 (30%), Positives = 96/210 (45%), Gaps = 11/210 (5%)
 Frame = +3

Query: 264 NEVQIFTLGSTSWRRKVGVVPKVLPRDSGILSAPIVYGSLHWITTSDNDESDPLKEGGSL 443
           ++VQI TLG   WR  +G V   L R +   S  +V G LHW++                
Sbjct: 205 SQVQILTLGCPGWR-SLGKVSYRLVRRA---SETLVNGRLHWVSRP-------------- 246

Query: 444 LIVSVYHRSKKKKSSNFITFHLGVEEFRFVPTPTLQLLKNSCYPYTLGVLEGHFSLMECS 623
                    + K +   ++F L  E+FR VP P    L N C  Y L VL G  S+    
Sbjct: 247 --------CRNKPARRLVSFDLTDEQFREVPKPDCGGL-NRC-DYHLAVLRGCLSVAVYC 296

Query: 624 SEPYIQVWVMNKYNVKESWVNQFCIELDSLGG--RGLGMPYYY---------VKLLQVCK 770
           +   +++WVM +YNVKESWV ++ I      G  + L  P            V+ L V K
Sbjct: 297 NYGRLEIWVMKEYNVKESWVKEYNIGAYMPKGLKQNLVRPLKIWKNASNGRAVRALCVLK 356

Query: 771 NGELLFVSGSKNLVSYNITSRKCRWVEIEG 860
           NGE+L    ++ LVSY+    K + ++++G
Sbjct: 357 NGEILLEYKNRALVSYDPKKGKFKDIDLQG 386


>ref|XP_002517454.1| conserved hypothetical protein [Ricinus communis]
           gi|223543465|gb|EEF44996.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 401

 Score = 58.5 bits (140), Expect(2) = 4e-11
 Identities = 62/239 (25%), Positives = 98/239 (41%), Gaps = 12/239 (5%)
 Frame = +3

Query: 267 EVQIFTLGSTSWRRKVGVVPKVLPRDSGILSAPIVYGSLHWITTSDNDESDPLKEGGSLL 446
           E  + T  + +WR     + K+    +G  S  +V   LHW+T                 
Sbjct: 193 EAFVLTANTPTWRN----IGKIGYDLNGPTSEALVNEKLHWLT----------------- 231

Query: 447 IVSVYHRSKKKKSSNFITFHLGVEEFRFVPTPTLQLLKNSCYPYTLGVLEGHFSLMECSS 626
              + H   K +    ++F L  E+F+ VP P    L      Y L  L G  S +   +
Sbjct: 232 -FCLVHEEVKYRE--IVSFDLETEQFQDVPRPGCGGLDQ--INYHLVTLRGCLSAIVSCN 286

Query: 627 EPYIQVWVMNKYNVKESWVNQFCIE-----------LDSLGGRGLGMPYYYVKLLQVCKN 773
           E   ++W+M  YNVK SW  +  +            +     R  G      ++L   KN
Sbjct: 287 EGSNEIWMMKIYNVKASWRKEMIVRNYVPQGLRLNTVPPARRRKNGYQGRRFRVLCDLKN 346

Query: 774 GELLFVSGSKNLVSYNITSRKCRWVEIEGV-LERSNRYFFAAHPLVGSHISLKSTFGMD 947
           GELL + G + +VSYN  + + + +  +G+ LE      F A    GS IS+ + FGM+
Sbjct: 347 GELLLLYGCRCIVSYNPETGEFKELNFQGLPLE------FLAFVHSGSLISVNTVFGME 399



 Score = 36.2 bits (82), Expect(2) = 4e-11
 Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = +1

Query: 34  YTWLPRNPIYMFNPITKQIGELPKFTVPKHNVPGWVDEV*IVGKFLSGFGYHDSI--FKL 207
           Y +   +P+Y++NP T +  ELP+     H+V         + + + GFG+H  +  +K+
Sbjct: 124 YDYFSDDPLYIYNPFTIECRELPRVEASPHSV---------ICRVVFGFGFHPKMEEYKV 174

Query: 208 VLVIF 222
           + +++
Sbjct: 175 IKIVY 179


>ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 389

 Score = 73.6 bits (179), Expect = 8e-11
 Identities = 65/227 (28%), Positives = 102/227 (44%), Gaps = 2/227 (0%)
 Frame = +3

Query: 258 FNNEVQIFTLGSTSWRRKVGVVPKVL-PRDSGILSAPIVYGSLHWITTSDNDESDPLKEG 434
           F +EV++F+L   SWRR   +   VL P ++GI +     G+LHW+ + D D +      
Sbjct: 169 FESEVKVFSLRKNSWRRIADMPYCVLYPGENGIYAN----GALHWLVSQDPDST------ 218

Query: 435 GSLLIVSVYHRSKKKKSSNFITFHLGVEEFRFVPTPTLQLLKNSCYPYTLGVLEGHFSLM 614
                           +   +   LGVE++  VP P  + +  +C    +GVL+G  SL+
Sbjct: 219 ---------------VADTIVALDLGVEDYHVVPKP--EFVDMNCN-MGVGVLQGCLSLL 260

Query: 615 ECSSEPYIQVWVMNKYNVKESWVNQFCI-ELDSLGGRGLGMPYYYVKLLQVCKNGELLFV 791
             +    + VWVM +Y VKESW   F +  L+ +G      P  Y K        E+L  
Sbjct: 261 AYARSERVDVWVMEEYMVKESWSKLFSVARLEVIGILRSLKPLAYSK-----SGNEVLIE 315

Query: 792 SGSKNLVSYNITSRKCRWVEIEGVLERSNRYFFAAHPLVGSHISLKS 932
             + NL  Y++  ++   V I+GV        F A   VGS + L +
Sbjct: 316 HDNVNLFWYDLKRKEVVNVWIQGV-----PITFEAEICVGSLVPLNA 357