BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00029269
         (245 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containi...   103   1e-20
ref|XP_002516308.1| pentatricopeptide repeat-containing protein,...   103   1e-20
ref|XP_003528054.1| PREDICTED: pentatricopeptide repeat-containi...   102   3e-20
ref|XP_004143404.1| PREDICTED: pentatricopeptide repeat-containi...    99   5e-19
ref|XP_003602633.1| Pentatricopeptide repeat-containing protein ...    99   5e-19

>ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 580

 Score =  103 bits (258), Expect = 1e-20
 Identities = 52/80 (65%), Positives = 60/80 (75%)
 Frame = +3

Query: 3   LIMYNAMIDAYGKCRDSDSSFWIFSRLRERNVVSWTSMVVAYTWVSRMEKACSLFDQMPV 182
           +I+ NA+IDAYGKC + D SF IFSR+ ER+VVSWTSMV AY   SR+E A  LF QM  
Sbjct: 183 IIIGNALIDAYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQE 242

Query: 183 KNAVSWTALIAGLVQNGHGN 242
           KN VSWTALIAG  QNG G+
Sbjct: 243 KNTVSWTALIAGFAQNGRGD 262


>ref|XP_002516308.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223544538|gb|EEF46055.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 599

 Score =  103 bits (258), Expect = 1e-20
 Identities = 49/78 (62%), Positives = 62/78 (79%)
 Frame = +3

Query: 3   LIMYNAMIDAYGKCRDSDSSFWIFSRLRERNVVSWTSMVVAYTWVSRMEKACSLFDQMPV 182
           +I+YNA+ID+YGKC   ++S+ IFSR+ ER+VVSWTSMV AY   SRM+ A  LF +MPV
Sbjct: 134 VIVYNALIDSYGKCGQHNTSYCIFSRMFERDVVSWTSMVDAYARASRMDDAFRLFMEMPV 193

Query: 183 KNAVSWTALIAGLVQNGH 236
           KN VSWT+LIAG  +NGH
Sbjct: 194 KNTVSWTSLIAGFAKNGH 211


>ref|XP_003528054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 737

 Score =  102 bits (254), Expect = 3e-20
 Identities = 47/77 (61%), Positives = 60/77 (77%)
 Frame = +3

Query: 3   LIMYNAMIDAYGKCRDSDSSFWIFSRLRERNVVSWTSMVVAYTWVSRMEKACSLFDQMPV 182
           +I+ NA+IDAYGKC + + SF +F  + ERNVVSWTSMVVAYT   R+++AC +F  MPV
Sbjct: 137 VILNNALIDAYGKCGEPNLSFSVFCYMPERNVVSWTSMVVAYTRACRLDEACRVFKDMPV 196

Query: 183 KNAVSWTALIAGLVQNG 233
           KN VSWTAL+ G V+NG
Sbjct: 197 KNTVSWTALLTGFVRNG 213



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 26/71 (36%), Positives = 43/71 (60%)
 Frame = +3

Query: 15  NAMIDAYGKCRDSDSSFWIFSRLRERNVVSWTSMVVAYTWVSRMEKACSLFDQMPVKNAV 194
           N +IDAY KC   +S+   F  L  +   SW +++  Y+     ++A +LFD+MP +N V
Sbjct: 49  NGLIDAYSKCGCEESAHKTFGDLPNKTTRSWNTLISFYSKTGFFDEAHNLFDKMPQRNVV 108

Query: 195 SWTALIAGLVQ 227
           S+ +LI+G +Q
Sbjct: 109 SYNSLISGNLQ 119


>ref|XP_004143404.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
           gi|449526377|ref|XP_004170190.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 577

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 46/80 (57%), Positives = 62/80 (77%)
 Frame = +3

Query: 3   LIMYNAMIDAYGKCRDSDSSFWIFSRLRERNVVSWTSMVVAYTWVSRMEKACSLFDQMPV 182
           +I+ NA++DAYGKC D D+S+ IFSR++ER+VV+WTSMVVAY   SR++ A  +F  MPV
Sbjct: 180 MIVCNAIVDAYGKCGDPDASYSIFSRMKERDVVTWTSMVVAYNQTSRLDDAFRVFSCMPV 239

Query: 183 KNAVSWTALIAGLVQNGHGN 242
           KN  +WTALI  LV+N + N
Sbjct: 240 KNVHTWTALINALVKNKYSN 259


>ref|XP_003602633.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355491681|gb|AES72884.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 647

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 45/77 (58%), Positives = 60/77 (77%)
 Frame = +3

Query: 3   LIMYNAMIDAYGKCRDSDSSFWIFSRLRERNVVSWTSMVVAYTWVSRMEKACSLFDQMPV 182
           LI+ NA+IDAYGKC + +SSF +F  + E++ VSWTSMVV YT  SR++ AC +F++MPV
Sbjct: 247 LILNNALIDAYGKCGEPNSSFCLFRSMVEKDAVSWTSMVVTYTRASRIDDACKVFNEMPV 306

Query: 183 KNAVSWTALIAGLVQNG 233
           K  VSW ALI+G V+NG
Sbjct: 307 KYTVSWAALISGFVKNG 323