BLASTX nr result

ID: Coptis21_contig00029170 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00029170
         (571 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002330082.1| predicted protein [Populus trichocarpa] gi|2...    42   5e-06

>ref|XP_002330082.1| predicted protein [Populus trichocarpa] gi|222871507|gb|EEF08638.1|
           predicted protein [Populus trichocarpa]
          Length = 665

 Score = 42.0 bits (97), Expect(3) = 5e-06
 Identities = 21/46 (45%), Positives = 34/46 (73%), Gaps = 2/46 (4%)
 Frame = +1

Query: 439 VGVVNASA--ALVEEGLQYFHSMKQVYGVDSALPAVEHYGRVTNFL 570
           +GV++A A   +V+EGL+ F+SM++VYG++   P +EHYG V + L
Sbjct: 398 LGVLSACAHSGMVDEGLRIFNSMEEVYGIE---PGMEHYGCVVDLL 440



 Score = 28.1 bits (61), Expect(3) = 5e-06
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 344 CGCLDMEWEVFDSME 388
           CG LDM W+VF+ ME
Sbjct: 341 CGRLDMAWDVFEKME 355



 Score = 24.3 bits (51), Expect(3) = 5e-06
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 387 KHKVVLWNAMIGGIAILGR 443
           K +V  WNAMI G+ + GR
Sbjct: 356 KKEVFTWNAMICGLGMHGR 374


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