BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00029157
         (1085 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308787.1| f-box family protein [Populus trichocarpa] g...   130   4e-28
ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus ...   127   5e-27
ref|XP_002531145.1| conserved hypothetical protein [Ricinus comm...   124   4e-26
ref|XP_002312730.1| predicted protein [Populus trichocarpa] gi|2...   122   1e-25
ref|XP_003610528.1| F-box family protein [Medicago truncatula] g...   122   2e-25

>ref|XP_002308787.1| f-box family protein [Populus trichocarpa]
           gi|222854763|gb|EEE92310.1| f-box family protein
           [Populus trichocarpa]
          Length = 396

 Score =  130 bits (328), Expect = 4e-28
 Identities = 97/301 (32%), Positives = 153/301 (50%), Gaps = 13/301 (4%)
 Frame = +1

Query: 82  MSSIPHDIIINILNRTPATSLLRFKAVSKQWYATISHPSFIKTHLSLAIENDSSDIFLVS 261
           MS +P ++I  IL R PA  LL  ++VSK W A I  P+F+K HL  +++  SS+++++ 
Sbjct: 1   MSGLPLEMIAEILCRLPAKELLCCRSVSKPWCALIDGPNFVKLHLKHSMDT-SSNLYIIL 59

Query: 262 HPCLHRKPLYCISGGDSFNESV---QIANPLGRFADVCQILGACNGIVCLC-VRNVICLL 429
               H   +         N+ V   ++ +PL  +    ++LG+ NG++C+  V + I + 
Sbjct: 60  RTTSHVHYM-DFEQNLVLNDCVTLKELNHPLMCYNHGIKVLGSVNGLLCISNVVDDIAVW 118

Query: 430 NPATKEYKIVKF-----RKEFRVDLRNVY--GLGYDPRTEVYKLVEFVEF-YEGRPGFNC 585
           NP+T+++++V F     ++ F     +VY  G GYD   + YKLV   +F   G+  F  
Sbjct: 119 NPSTRKHRVVPFLPIELKRYFGTKSCSVYVFGFGYDSVRDDYKLVRIAQFGGGGKRSFE- 177

Query: 586 YCKVIVYXXXXXXXXXXFDIPHIFDNRGRLGVYVNGGLHW-IASLITSCFYRAILCYDVG 762
             +V VY           D+P+     G  GV+ NG LHW +     S     ++  D+G
Sbjct: 178 -SEVKVYSLRKQSWRRIGDMPYCVHYPGANGVFANGALHWVVGENPESNVANIVVALDLG 236

Query: 763 EDVWREVVPPIDADVFILVALGDLGGQLCTACWSRNCDVDVWVMKSYGDSGSWSKLFSFA 942
            + +REV+ P   D    + LG L G LC         VDVW+MK YG   SW+KLFS A
Sbjct: 237 VEDYREVLQPEYKDKNFYIDLGVLRGCLCFLANFLGERVDVWMMKEYGVKESWTKLFSVA 296

Query: 943 E 945
           +
Sbjct: 297 Q 297


>ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 389

 Score =  127 bits (319), Expect = 5e-27
 Identities = 95/299 (31%), Positives = 149/299 (49%), Gaps = 12/299 (4%)
 Frame = +1

Query: 82  MSSIPHDIIINILNRTPATSLLRFKAVSKQWYATISHPSFIKTHLSLAIENDSSDIFLVS 261
           MS++P ++I  IL R  A  LL  + VSK+W   I  P+FI  HL+ +IE+  +   +  
Sbjct: 1   MSNLPLEMIAEILCRLTAKKLLCCRCVSKRWRTLIDSPTFIYLHLNHSIESPCNLSII-- 58

Query: 262 HPCLHRKPLYCISGGDSFNESVQIANPLGRFADVCQILGACNGIVCLC-VRNVICLLNPA 438
              L    LY +S  D  +    + +PL  +    +ILG+CNG++C+C + + I L NP+
Sbjct: 59  ---LKSSELYSLSF-DLLDNIQPLDHPLMCYNHGVKILGSCNGLLCICNIVDDIALWNPS 114

Query: 439 TKEYKIVKFRKEFRVDLR----------NVYGLGYDPRTEVYKLVEFVEFYEGRPGFNCY 588
            + +++V +     V+L+          +V+G GYD   + YKLV   +F  G    +  
Sbjct: 115 IRAHRVVPY---LPVELKRYFGMCSCRVSVFGFGYDLSNDDYKLVRIAQF-GGVDRKSFE 170

Query: 589 CKVIVYXXXXXXXXXXFDIPHIFDNRGRLGVYVNGGLHWIASLIT-SCFYRAILCYDVGE 765
            +V V+           D+P+     G  G+Y NG LHW+ S    S     I+  D+G 
Sbjct: 171 SEVKVFSLRKNSWRRIADMPYCVLYPGENGIYANGALHWLVSQDPDSTVADTIVALDLGV 230

Query: 766 DVWREVVPPIDADVFILVALGDLGGQLCTACWSRNCDVDVWVMKSYGDSGSWSKLFSFA 942
           + +  V  P   D+   + +G L G L    ++R+  VDVWVM+ Y    SWSKLFS A
Sbjct: 231 EDYHVVPKPEFVDMNCNMGVGVLQGCLSLLAYARSERVDVWVMEEYMVKESWSKLFSVA 289


>ref|XP_002531145.1| conserved hypothetical protein [Ricinus communis]
           gi|223529258|gb|EEF31230.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 427

 Score =  124 bits (311), Expect = 4e-26
 Identities = 104/325 (32%), Positives = 154/325 (47%), Gaps = 33/325 (10%)
 Frame = +1

Query: 91  IPHDIIINILNRTPATSLLRFKAVSKQWYATISHPSFIKTHLSLAIENDSSDIF---LVS 261
           IP D++I IL +    ++LR + VSKQW A I  P FIK H   AI+ ++S IF   L  
Sbjct: 5   IPRDLLIEILIQCQIPTILRCRCVSKQWRALIDDPQFIKQHTDYAIQTNASRIFFNELFG 64

Query: 262 HPCLHRKPLYCISGGDSFNESVQIAN-PLGRFADVCQILGACNGIVCLCVRNV----ICL 426
           + C    PL          ++++I N P+        ++G+CNG+  LC+RNV    IC+
Sbjct: 65  NLC--SSPL----------DTLEIRNVPIISQVQPVSLVGSCNGL--LCLRNVDTQDICI 110

Query: 427 LNPATKEYKIVK------FRKEFRVDLRNVYGLGYDPRTEVYKLVEFVEFYEGRPGFN-- 582
           +NPAT+++  ++       R E        YG GYD   + YK+V   +  +  P  N  
Sbjct: 111 MNPATRKHMYLQNLLPNNCRDEQNKVSLTGYGFGYDCVNDDYKVVRIAQKIDAEPRINNG 170

Query: 583 -----------CYCKVIVYXXXXXXXXXXFDIPHIFDNRGRLGVYVNGGLHWIASL---I 720
                      C  K  V             +P+ F     LGV   G LHW+      +
Sbjct: 171 NLGFLETEMSICNVKTRV--------LKVVKMPY-FTLVNDLGVLACGALHWLMGKYNDV 221

Query: 721 TSCFYRAILCYDVGEDVWREVVPP--IDADVFILVALGDLGGQLC-TACWSRNCDVDVWV 891
           TS   + I+ YD+G D +RE+  P  ++ D      +G LG  LC +A ++    +D WV
Sbjct: 222 TSLKKKLIVGYDLGTDEFRELSQPEFLNHD-NCRKNIGLLGTWLCLSANYNPEEGIDFWV 280

Query: 892 MKSYGDSGSWSKLFSFAENMLPIRF 966
           MK YGD  SW+ LFSF    +P R+
Sbjct: 281 MKEYGDKESWTMLFSFPITFIPCRY 305


>ref|XP_002312730.1| predicted protein [Populus trichocarpa] gi|222852550|gb|EEE90097.1|
            predicted protein [Populus trichocarpa]
          Length = 445

 Score =  122 bits (307), Expect = 1e-25
 Identities = 107/350 (30%), Positives = 168/350 (48%), Gaps = 24/350 (6%)
 Frame = +1

Query: 40   NLSPPPRQKKRN*T----MSSIPHDIIINILNRTPATSLLRFKAVSKQWYATISHPSFIK 207
            NLSPP   KKR       + ++PH++II IL+R PA SL++F+ VSK + + IS+P FIK
Sbjct: 58   NLSPPQTNKKRTKKTPPPLPNLPHELIIEILSRLPAKSLIKFRCVSKSFKSLISNPQFIK 117

Query: 208  THLSLA---IEND---SSDIFLVSHPCLHRKPLYCISGGDSFNESVQIANPLGRF--ADV 363
            THL        ND   S +I + S   L R  L   S    +N  V  A  +  +   D+
Sbjct: 118  THLEKVKNLSRNDPDFSPEIVISSSEPLFR--LKSCSLYSVYNNPVTDAVVIDYYLLKDI 175

Query: 364  CQ---ILGACNGIVCLCVR-NVICLLNPATKEY-KIVKFRKEFRVDLRNVYGLGYDPRTE 528
             +   ++G+C+G+VCL ++ + + L NP+T+ + ++       ++    V+G GYD + +
Sbjct: 176  YRYDWVVGSCDGLVCLGIKQDFVVLWNPSTRVFNRLPDLGFAKKLGSYTVFGFGYDSQID 235

Query: 529  VYKLVEFVEFYE----GRPGFNCYCKVIVYXXXXXXXXXXFDIPHIFDNRGRLGVYVNGG 696
             YK++    F      G   +    KV             F +   +D  G+   +V+G 
Sbjct: 236  DYKVLAMFCFLTKSVYGGSRYVTRIKVCALKGECWRRLEDFGLGLPYDVSGK---HVDGK 292

Query: 697  LHWIA---SLITSCFYRAILCYDVGEDVWREVVPPIDADVFILVALGDLGGQLCTACWSR 867
            L W       I S +  +I+ +D+ ++++ EVV P    V     LG L G LC  C  +
Sbjct: 293  LCWPVMPEGSIGSAW--SIVAFDLAQEMFEEVVQPDYGAVGYERVLGVLQGWLCVMCNYQ 350

Query: 868  NCDVDVWVMKSYGDSGSWSKLFSFAENMLPIRFPPVTAFRFSGNGSVLLQ 1017
                DVWV+K +G   SW+KLFS      P+ F           G VLL+
Sbjct: 351  GVRADVWVLKEFGVRDSWTKLFSIPYLDDPLWFHYSVPLCIDVGGEVLLE 400


>ref|XP_003610528.1| F-box family protein [Medicago truncatula]
            gi|355511583|gb|AES92725.1| F-box family protein
            [Medicago truncatula]
          Length = 392

 Score =  122 bits (305), Expect = 2e-25
 Identities = 92/325 (28%), Positives = 152/325 (46%), Gaps = 14/325 (4%)
 Frame = +1

Query: 82   MSSIPHDIIINILNRTPATSLLRFKAVSKQWYATISHPSFIKTHLSLAIENDSSDIFLVS 261
            M+ +P ++   IL+R PA  LLR ++  K W   I    FI  HLS   ++  S I L  
Sbjct: 1    MADLPTEVTTEILSRVPAKPLLRLRSTCKWWRNLIDSTDFIFLHLS---KSRDSVIILRQ 57

Query: 262  HPCLHRKPLYCISGGDSFNESVQIANPLGRFADVCQILGACNGIVCLC-VRNVICLLNPA 438
            H  L+   L      +S +   ++ +PL  +++  ++LG+CNG++C+C + + I   NP 
Sbjct: 58   HSRLYELDL------NSMDRVKELDHPLMCYSNRIKVLGSCNGLLCICNIADDIAFWNPT 111

Query: 439  TKEYKIVK----FRKEFRVD-------LRNVYGLGYDPRTEVYKLVEFVEFYE-GRPGFN 582
             ++++I+      RKE   +         +VYG GYD  T+ YKLV    F +     F+
Sbjct: 112  IRKHRIIPSEPLIRKETNENNTITTLLAAHVYGFGYDSATDDYKLVSISYFVDLHNRSFD 171

Query: 583  CYCKVIVYXXXXXXXXXXFDIPHIFDNRGRLGVYVNGGLHWIASLITSCFYR-AILCYDV 759
             + K  +Y            +P+       +GV+V+G LHW+ +       R  I+ +D+
Sbjct: 172  SHVK--IYTMRTDVWKTLPSMPYALCCARTMGVFVSGALHWVVTRDLEPESRDLIVAFDL 229

Query: 760  GEDVWREVVPPIDADVFILVALGDLGGQLCTACWSRNCDVDVWVMKSYGDSGSWSKLFSF 939
              +V+REV  P   D    + +  L G LC      +   DVWVM+ YG   SW K+F+ 
Sbjct: 230  RFEVFREVALPGTVDGKFDMDVALLRGMLCIIENRGSDGFDVWVMREYGSHDSWCKMFTV 289

Query: 940  AENMLPIRFPPVTAFRFSGNGSVLL 1014
             +         +    +S NG  +L
Sbjct: 290  GQPRDVKLMKSLKPLGYSRNGDKVL 314