BLASTX nr result

ID: Coptis21_contig00029155 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00029155
         (217 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEO22189.1| ABCG subfamily transporter protein [Solanum tuber...    62   5e-08
ref|XP_002514349.1| ATP-binding cassette transporter, putative [...    62   6e-08
gb|AFA43816.1| ABCG/PDR subfamily ABC protein [Petunia x hybrida]      61   1e-07
gb|AFA43815.1| ABCG/PDR subfamily ABC transporter [Petunia axill...    61   1e-07
ref|XP_002285178.2| PREDICTED: pleiotropic drug resistance prote...    61   1e-07

>gb|AEO22189.1| ABCG subfamily transporter protein [Solanum tuberosum]
          Length = 1423

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 41/98 (41%), Positives = 49/98 (50%), Gaps = 32/98 (32%)
 Frame = +1

Query: 1   NVLEFFGLMGFQCPYRKGVRLLTFLQEDS*VISKKD*KQYWVRKD--------------- 135
           NVLEFF  +GF+CP RKGV    FLQE   V S+KD +QYW R+D               
Sbjct: 565 NVLEFFEYLGFKCPQRKGV--ADFLQE---VTSRKDQEQYWSRRDEPYRFITACEFSDVF 619

Query: 136 -----------------DKSKSQHATLTTKTFGVNKKE 198
                            DKSKS  A LTTK +G++KKE
Sbjct: 620 QSFDVGRKLGDELAVPFDKSKSHPAALTTKRYGISKKE 657


>ref|XP_002514349.1| ATP-binding cassette transporter, putative [Ricinus communis]
           gi|223546805|gb|EEF48303.1| ATP-binding cassette
           transporter, putative [Ricinus communis]
          Length = 1309

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 42/98 (42%), Positives = 49/98 (50%), Gaps = 32/98 (32%)
 Frame = +1

Query: 1   NVLEFFGLMGFQCPYRKGVRLLTFLQEDS*VISKKD*KQYWVRKD--------------- 135
           NVLEFF  MGF+CP RKGV    FLQE   V S+KD +QYW RK+               
Sbjct: 270 NVLEFFEHMGFRCPERKGV--ADFLQE---VTSRKDQEQYWTRKEEPYSFISVKEFAEAF 324

Query: 136 -----------------DKSKSQHATLTTKTFGVNKKE 198
                            DKSK+  A LTTK +GV+KKE
Sbjct: 325 QSFHIGRKLGDELAAPFDKSKAHPAALTTKRYGVSKKE 362


>gb|AFA43816.1| ABCG/PDR subfamily ABC protein [Petunia x hybrida]
          Length = 1452

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 42/98 (42%), Positives = 48/98 (48%), Gaps = 32/98 (32%)
 Frame = +1

Query: 1   NVLEFFGLMGFQCPYRKGVRLLTFLQEDS*VISKKD*KQYWVRKD--------------- 135
           NVLEFF  MGF CP RKGV    FLQE   V S+KD +QYW R++               
Sbjct: 411 NVLEFFEYMGFICPERKGV--ADFLQE---VTSRKDQEQYWARREESYKFITVREFSEAF 465

Query: 136 -----------------DKSKSQHATLTTKTFGVNKKE 198
                            DKSKS  A LTTK +GV+KKE
Sbjct: 466 QAFHIGRKLGDELAVPFDKSKSHPAALTTKRYGVSKKE 503


>gb|AFA43815.1| ABCG/PDR subfamily ABC transporter [Petunia axillaris]
          Length = 1452

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 42/98 (42%), Positives = 48/98 (48%), Gaps = 32/98 (32%)
 Frame = +1

Query: 1   NVLEFFGLMGFQCPYRKGVRLLTFLQEDS*VISKKD*KQYWVRKD--------------- 135
           NVLEFF  MGF CP RKGV    FLQE   V S+KD +QYW R++               
Sbjct: 411 NVLEFFEYMGFICPERKGV--ADFLQE---VTSRKDQEQYWARREESYKFITVREFSEAF 465

Query: 136 -----------------DKSKSQHATLTTKTFGVNKKE 198
                            DKSKS  A LTTK +GV+KKE
Sbjct: 466 QAFHIGRKLGDELAVPFDKSKSHPAALTTKRYGVSKKE 503


>ref|XP_002285178.2| PREDICTED: pleiotropic drug resistance protein 1 isoform 1 [Vitis
           vinifera]
          Length = 1430

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 42/98 (42%), Positives = 48/98 (48%), Gaps = 32/98 (32%)
 Frame = +1

Query: 1   NVLEFFGLMGFQCPYRKGVRLLTFLQEDS*VISKKD*KQYWVRKD--------------- 135
           +VLEFF   GF+CP RKGV    FLQE   V SKKD +QYW RK+               
Sbjct: 410 DVLEFFESTGFRCPERKGV--ADFLQE---VTSKKDQQQYWARKEEPYRFVTVKEFAEAF 464

Query: 136 -----------------DKSKSQHATLTTKTFGVNKKE 198
                            DK+KS  A LTTK +GVNKKE
Sbjct: 465 QSFHTGRKVGDELASPYDKTKSHPAALTTKKYGVNKKE 502


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