BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00029047
         (443 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002523296.1| pentatricopeptide repeat-containing protein,...    88   6e-16
gb|ABD96949.1| hypothetical protein [Cleome spinosa]                   87   2e-15
ref|XP_002522388.1| pentatricopeptide repeat-containing protein,...    86   3e-15
ref|XP_002324099.1| predicted protein [Populus trichocarpa] gi|2...    86   4e-15
ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containi...    86   4e-15

>ref|XP_002523296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223537384|gb|EEF39012.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 353

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 47/105 (44%), Positives = 68/105 (64%)
 Frame = +1

Query: 91  LLRSHWDCQSKEESVTVILSTLIDMYCKCSSVEEAERVFGNQIPLKHVSHWNAMISGYIN 270
           +L +H+  +S  ES  + L+ L+DMYCK   V  A RVF ++IP++ +  WNA+I+GY  
Sbjct: 103 MLHTHFK-KSGFESDVIALTALVDMYCKLGMVAFAHRVF-DEIPVRDIPTWNALIAGYSR 160

Query: 271 NGLLNNAIEHFTRMPERNVVSWTAMISGYVKYGMPHEGLRLLAEM 405
            G +  A++ F  MP+RNVVSWTAMISGY + G   + L L  +M
Sbjct: 161 CGDMEGALKIFKLMPDRNVVSWTAMISGYSQNGRYAKALELFLKM 205


>gb|ABD96949.1| hypothetical protein [Cleome spinosa]
          Length = 639

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 42/93 (45%), Positives = 63/93 (67%)
 Frame = +1

Query: 127 ESVTVILSTLIDMYCKCSSVEEAERVFGNQIPLKHVSHWNAMISGYINNGLLNNAIEHFT 306
           E  T I + L+DMYCKC  V++A  +F +++  K+V  W +M+SGY +NG L+ A E F 
Sbjct: 247 EMTTKIGNALLDMYCKCGCVDKARAIF-DEMGNKNVICWTSMVSGYASNGSLDEARELFE 305

Query: 307 RMPERNVVSWTAMISGYVKYGMPHEGLRLLAEM 405
           R P R++V WTAMI+GYV++ +  E L+L  +M
Sbjct: 306 RSPVRDIVLWTAMINGYVQFNLFDEALKLFRKM 338


>ref|XP_002522388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538466|gb|EEF40072.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 472

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 45/91 (49%), Positives = 59/91 (64%)
 Frame = +1

Query: 139 VILSTLIDMYCKCSSVEEAERVFGNQIPLKHVSHWNAMISGYINNGLLNNAIEHFTRMPE 318
           V  + LIDMY KC ++  AERVF  Q+P K+V  W +MI+ Y   GL+  A + F +MPE
Sbjct: 225 VARNALIDMYAKCGALVLAERVF-QQMPNKNVVSWTSMITAYAKQGLVEYARKSFDQMPE 283

Query: 319 RNVVSWTAMISGYVKYGMPHEGLRLLAEMYS 411
           +NVVSW +MIS YV+ G   E L L  EM+S
Sbjct: 284 KNVVSWNSMISSYVQGGQCREALDLFHEMHS 314


>ref|XP_002324099.1| predicted protein [Populus trichocarpa] gi|222867101|gb|EEF04232.1|
           predicted protein [Populus trichocarpa]
          Length = 676

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 41/94 (43%), Positives = 63/94 (67%)
 Frame = +1

Query: 142 ILSTLIDMYCKCSSVEEAERVFGNQIPLKHVSHWNAMISGYINNGLLNNAIEHFTRMPER 321
           IL+ L++MY KC S+ +++++F +++P + +  WN +ISGY   GLL  A   F +MPER
Sbjct: 107 ILNRLLEMYAKCDSLMDSQKLF-DEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPER 165

Query: 322 NVVSWTAMISGYVKYGMPHEGLRLLAEMYSNKDS 423
           +  SWTAMISGYV++  P+E L L   M  + +S
Sbjct: 166 DNFSWTAMISGYVRHDRPNEALELFRMMKRSDNS 199


>ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 52/118 (44%), Positives = 70/118 (59%), Gaps = 1/118 (0%)
 Frame = +1

Query: 61  GKQVYGIIM-TLLRSHWDCQSKEESVTVILSTLIDMYCKCSSVEEAERVFGNQIPLKHVS 237
           GKQV+  I+ T  R   D      SV   L+TL   Y KC  V+EA +VF NQ+P+K + 
Sbjct: 310 GKQVHAYILRTEPRPSLDFSL---SVNNALATL---YWKCGKVDEARQVF-NQMPVKDLV 362

Query: 238 HWNAMISGYINNGLLNNAIEHFTRMPERNVVSWTAMISGYVKYGMPHEGLRLLAEMYS 411
            WNA++SGY+N G ++ A   F  MPERN+++WT MISG  + G   E L+L   M S
Sbjct: 363 SWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKS 420



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 16/129 (12%)
 Frame = +1

Query: 70  VYGIIMTLLRSHWDCQ--------SKEESVTVILSTLIDMYCKC--------SSVEEAER 201
           V G +  ++     CQ        S    VT +L+ L+ ++ KC        SS+  A R
Sbjct: 155 VLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAAR 214

Query: 202 VFGNQIPLKHVSHWNAMISGYINNGLLNNAIEHFTRMPERNVVSWTAMISGYVKYGMPHE 381
              +++  +    W  MI+GY+ NG L+ A +    M E+ VV+W AMISGYV +G   E
Sbjct: 215 KLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLE 274

Query: 382 GLRLLAEMY 408
            L +  +MY
Sbjct: 275 ALEMFRKMY 283