BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00028940
         (613 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containi...   140   2e-31
ref|XP_002881503.1| pentatricopeptide repeat-containing protein ...   129   5e-28
ref|NP_181268.1| pentatricopeptide repeat-containing protein [Ar...   128   7e-28
ref|XP_003541398.1| PREDICTED: pentatricopeptide repeat-containi...   127   2e-27
ref|XP_002525211.1| pentatricopeptide repeat-containing protein,...   124   1e-26

>ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Vitis vinifera]
          Length = 667

 Score =  140 bits (352), Expect = 2e-31
 Identities = 69/106 (65%), Positives = 82/106 (77%)
 Frame = -1

Query: 613 KFVCDRLFELEPENSWNYIIMANLYSQAGRWEEAEKVREKMKNMGLKKVPGCSWIETSGG 434
           KFVCD LF +EPEN+ NY+IMANLYSQAGRWEEAE +REKMK +GLKK+PG SWIETSGG
Sbjct: 562 KFVCDHLFNMEPENTGNYVIMANLYSQAGRWEEAENIREKMKKIGLKKIPGTSWIETSGG 621

Query: 433 VVSFIAGDGSNAMMEEIFVVLEILVQMMGKESYVAIVELDEESVCI 296
           + SFIA D S+   EEI+ +LE L+ +M +E Y    ELDEE   I
Sbjct: 622 LRSFIARDVSSERSEEIYGMLEGLLGLMREEGYTLQDELDEECAYI 667


>ref|XP_002881503.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297327342|gb|EFH57762.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 669

 Score =  129 bits (323), Expect = 5e-28
 Identities = 61/101 (60%), Positives = 78/101 (77%)
 Frame = -1

Query: 613 KFVCDRLFELEPENSWNYIIMANLYSQAGRWEEAEKVREKMKNMGLKKVPGCSWIETSGG 434
           +F CDRLFE+EPEN+ NY IMANLY+QAGRWEEAE VR+KMK +GLKK+PG SWIET+ G
Sbjct: 555 RFACDRLFEMEPENTGNYTIMANLYTQAGRWEEAEVVRDKMKRIGLKKIPGTSWIETNKG 614

Query: 433 VVSFIAGDGSNAMMEEIFVVLEILVQMMGKESYVAIVELDE 311
           + SFIA D S    +E++ ++E LV+ M  + Y+   ELDE
Sbjct: 615 LRSFIAKDSSCERSKEMYDIIEGLVESMSDKEYIMKQELDE 655


>ref|NP_181268.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75216848|sp|Q9ZUT5.1|PP191_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g37310 gi|4056485|gb|AAC98051.1| hypothetical protein
           [Arabidopsis thaliana] gi|110741249|dbj|BAF02175.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|330254288|gb|AEC09382.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  128 bits (322), Expect = 7e-28
 Identities = 61/101 (60%), Positives = 76/101 (75%)
 Frame = -1

Query: 613 KFVCDRLFELEPENSWNYIIMANLYSQAGRWEEAEKVREKMKNMGLKKVPGCSWIETSGG 434
           +F CDRLFE+EPEN+ NY IMANLY+QAGRWEEAE VR KMK +GLKK+PG SWIET  G
Sbjct: 555 RFACDRLFEMEPENTGNYTIMANLYTQAGRWEEAEMVRNKMKRIGLKKIPGTSWIETEKG 614

Query: 433 VVSFIAGDGSNAMMEEIFVVLEILVQMMGKESYVAIVELDE 311
           + SFIA D S    +E++ ++E LV+ M  + Y+   ELDE
Sbjct: 615 LRSFIAKDSSCERSKEMYEIIEGLVESMSDKEYIRKQELDE 655


>ref|XP_003541398.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Glycine max]
          Length = 667

 Score =  127 bits (319), Expect = 2e-27
 Identities = 62/104 (59%), Positives = 81/104 (77%)
 Frame = -1

Query: 613 KFVCDRLFELEPENSWNYIIMANLYSQAGRWEEAEKVREKMKNMGLKKVPGCSWIETSGG 434
           KF CD LFE+EPEN+ NYIIMANLY+ AG+WE+A +VRE+MK +GL+K+ G SWIETSGG
Sbjct: 562 KFACDHLFEIEPENTGNYIIMANLYAHAGKWEQAGEVRERMKVIGLQKIRGSSWIETSGG 621

Query: 433 VVSFIAGDGSNAMMEEIFVVLEILVQMMGKESYVAIVELDEESV 302
           ++SFIA D SN   +EI+ +LE L+ +M +E  V   ELD E+V
Sbjct: 622 LLSFIAKDVSNGRSDEIYALLEGLLGLMREEGCVLQEELDYENV 665


>ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535508|gb|EEF37177.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 654

 Score =  124 bits (311), Expect = 1e-26
 Identities = 62/104 (59%), Positives = 79/104 (75%)
 Frame = -1

Query: 613 KFVCDRLFELEPENSWNYIIMANLYSQAGRWEEAEKVREKMKNMGLKKVPGCSWIETSGG 434
           K VCD LFE+EPEN+ NY+IMANLYSQAGRW+EA++VRE+M  +GL+K+PG SWIETS G
Sbjct: 549 KSVCDYLFEIEPENTGNYVIMANLYSQAGRWKEADEVRERMNKVGLQKIPGSSWIETSEG 608

Query: 433 VVSFIAGDGSNAMMEEIFVVLEILVQMMGKESYVAIVELDEESV 302
           + SFIA D     +EEI V+L+ L+ +M  E  V    LDEES+
Sbjct: 609 LRSFIATDTCTENVEEIHVILKGLLGLMRDEGKVLQDMLDEESI 652