BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00028933
         (511 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containi...   227   9e-58
emb|CAN74829.1| hypothetical protein VITISV_002140 [Vitis vinifera]   227   9e-58
ref|XP_002512380.1| pentatricopeptide repeat-containing protein,...   222   2e-56
ref|XP_002319538.1| predicted protein [Populus trichocarpa] gi|2...   221   6e-56
ref|XP_003520812.1| PREDICTED: pentatricopeptide repeat-containi...   219   2e-55

>ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340
           [Vitis vinifera]
          Length = 656

 Score =  227 bits (578), Expect = 9e-58
 Identities = 116/172 (67%), Positives = 140/172 (81%), Gaps = 3/172 (1%)
 Frame = +3

Query: 3   EMFVTNVITWTAVISGLAQSEFCEESLRLFWEMRREFVEPNSLTYSSSLLACSGLRALSE 182
           EM   NV+TWTAVISGL+Q +F EESL+LF +MR   V+PNSLTY SSL+ACSGL+A+ E
Sbjct: 216 EMSEKNVVTWTAVISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIRE 275

Query: 183 GRQIHGVVLKSGYQSDLCLESALMDMYSKCSCVEDACRIFDSAEEVDEISMTVILVGFAQ 362
           GRQIHG+V K G   DLC+ESALMDMYSKC  +EDA +IF+SAEEVDE+SMTVILVG AQ
Sbjct: 276 GRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQ 335

Query: 363 NGFEQEAINIFVKMLKAGNRIDSNLVSAVLGA---DVHLSLGKQIHSLAVKK 509
           NGFE+E+I +FVKM+K G  ID N++SA+LG    D  L+LGKQIHSL +KK
Sbjct: 336 NGFEEESIQVFVKMVKNGVVIDPNMISAILGVFGIDTSLALGKQIHSLIIKK 387



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 43/154 (27%), Positives = 89/154 (57%), Gaps = 3/154 (1%)
 Frame = +3

Query: 24  ITWTAVISGLAQSEFCEESLRLFWEMRRE--FVEPNSLTYSSSLLACSGL-RALSEGRQI 194
           ++ T ++ GLAQ+ F EES+++F +M +    ++PN +   S++L   G+  +L+ G+QI
Sbjct: 324 VSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMI---SAILGVFGIDTSLALGKQI 380

Query: 195 HGVVLKSGYQSDLCLESALMDMYSKCSCVEDACRIFDSAEEVDEISMTVILVGFAQNGFE 374
           H +++K  + S+  + + L++MYSKC  ++D+ +IF    + + +S   ++  FA++G  
Sbjct: 381 HSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFARHGNG 440

Query: 375 QEAINIFVKMLKAGNRIDSNLVSAVLGADVHLSL 476
             A+ ++ +M   G         ++L A  H+ L
Sbjct: 441 SRALQLYEEMRLEGVWPTDVTFLSLLHACAHVGL 474



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 6/173 (3%)
 Frame = +3

Query: 6   MFVTNVITWTAVISGLAQSEFCEESLRLFWEMRREFV-EPNSLTYSSSLLACSGLRALSE 182
           M + + I+W + ISGL  +   E   R+F ++    + + +  T ++ L AC        
Sbjct: 115 MPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACDKPEFCYV 174

Query: 183 GRQIHGVVLKSGYQSDLCLESALMDMYSKCSCVEDACRIFDSAEEVDEISMTVILVGFAQ 362
            + IH +V   GY+ ++ + +AL+  Y +C C     R+FD   E + ++ T ++ G +Q
Sbjct: 175 SKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQ 234

Query: 363 NGFEQEAINIFVKMLKAGNRIDSNLVSAVLGADVHLSL-----GKQIHSLAVK 506
             F +E++ +F KM      +D N ++ +        L     G+QIH L  K
Sbjct: 235 GQFYEESLKLFGKM--RDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWK 285


>emb|CAN74829.1| hypothetical protein VITISV_002140 [Vitis vinifera]
          Length = 542

 Score =  227 bits (578), Expect = 9e-58
 Identities = 116/172 (67%), Positives = 140/172 (81%), Gaps = 3/172 (1%)
 Frame = +3

Query: 3   EMFVTNVITWTAVISGLAQSEFCEESLRLFWEMRREFVEPNSLTYSSSLLACSGLRALSE 182
           EM   NV+TWTAVISGL+Q +F EESL+LF +MR   V+PNSLTY SSL+ACSGL+A+ E
Sbjct: 102 EMSEKNVVTWTAVISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIRE 161

Query: 183 GRQIHGVVLKSGYQSDLCLESALMDMYSKCSCVEDACRIFDSAEEVDEISMTVILVGFAQ 362
           GRQIHG+V K G   DLC+ESALMDMYSKC  +EDA +IF+SAEEVDE+SMTVILVG AQ
Sbjct: 162 GRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQ 221

Query: 363 NGFEQEAINIFVKMLKAGNRIDSNLVSAVLGA---DVHLSLGKQIHSLAVKK 509
           NGFE+E+I +FVKM+K G  ID N++SA+LG    D  L+LGKQIHSL +KK
Sbjct: 222 NGFEEESIQVFVKMVKNGVVIDPNMISAILGVFGIDTSLALGKQIHSLIIKK 273



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 43/154 (27%), Positives = 89/154 (57%), Gaps = 3/154 (1%)
 Frame = +3

Query: 24  ITWTAVISGLAQSEFCEESLRLFWEMRRE--FVEPNSLTYSSSLLACSGL-RALSEGRQI 194
           ++ T ++ GLAQ+ F EES+++F +M +    ++PN +   S++L   G+  +L+ G+QI
Sbjct: 210 VSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMI---SAILGVFGIDTSLALGKQI 266

Query: 195 HGVVLKSGYQSDLCLESALMDMYSKCSCVEDACRIFDSAEEVDEISMTVILVGFAQNGFE 374
           H +++K  + S+  + + L++MYSKC  ++D+ +IF    + + +S   ++  FA++G  
Sbjct: 267 HSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFARHGNG 326

Query: 375 QEAINIFVKMLKAGNRIDSNLVSAVLGADVHLSL 476
             A+ ++ +M   G         ++L A  H+ L
Sbjct: 327 SRALQLYEEMRLEGVWPTDVTFLSLLHACAHVGL 360



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 6/173 (3%)
 Frame = +3

Query: 6   MFVTNVITWTAVISGLAQSEFCEESLRLFWEMRREFV-EPNSLTYSSSLLACSGLRALSE 182
           M + + I+W + ISGL  +   E   R+F ++    + + +  T ++ L AC        
Sbjct: 1   MPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACDKPEFCYV 60

Query: 183 GRQIHGVVLKSGYQSDLCLESALMDMYSKCSCVEDACRIFDSAEEVDEISMTVILVGFAQ 362
            + IH +V   GY+ ++ + +AL+  Y +C C     R+FD   E + ++ T ++ G +Q
Sbjct: 61  SKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQ 120

Query: 363 NGFEQEAINIFVKMLKAGNRIDSNLVSAVLGADVHLSL-----GKQIHSLAVK 506
             F +E++ +F KM      +D N ++ +        L     G+QIH L  K
Sbjct: 121 GQFYEESLKLFGKM--RDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWK 171


>ref|XP_002512380.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548341|gb|EEF49832.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 736

 Score =  222 bits (566), Expect = 2e-56
 Identities = 113/172 (65%), Positives = 136/172 (79%), Gaps = 3/172 (1%)
 Frame = +3

Query: 3   EMFVTNVITWTAVISGLAQSEFCEESLRLFWEMRREFVEPNSLTYSSSLLACSGLRALSE 182
           EM   NVITWTA+ISGL+Q+E  E+SL LF +MR   +EPN LTY SSL ACSGL+AL +
Sbjct: 48  EMLERNVITWTAIISGLSQNEMYEDSLGLFVQMRCGLIEPNFLTYLSSLTACSGLQALEK 107

Query: 183 GRQIHGVVLKSGYQSDLCLESALMDMYSKCSCVEDACRIFDSAEEVDEISMTVILVGFAQ 362
           GRQIHG+V K G QS+LC+ESALMD+YSKC  +EDA R+F+SA E+DE+SMTVILVGF Q
Sbjct: 108 GRQIHGLVWKLGIQSNLCIESALMDLYSKCGSLEDARRVFESAVELDEVSMTVILVGFTQ 167

Query: 363 NGFEQEAINIFVKMLKAGNRIDSNLVSAVLGA---DVHLSLGKQIHSLAVKK 509
           NGFE+EAI  FVKM+  G  +D N+VSAVLGA   D  L LGKQIHSL +K+
Sbjct: 168 NGFEEEAIEFFVKMVNIGTEVDPNMVSAVLGACGVDTSLGLGKQIHSLVIKR 219



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 35/131 (26%), Positives = 73/131 (55%)
 Frame = +3

Query: 24  ITWTAVISGLAQSEFCEESLRLFWEMRREFVEPNSLTYSSSLLACSGLRALSEGRQIHGV 203
           ++ T ++ G  Q+ F EE++  F +M     E +    S+ L AC    +L  G+QIH +
Sbjct: 156 VSMTVILVGFTQNGFEEEAIEFFVKMVNIGTEVDPNMVSAVLGACGVDTSLGLGKQIHSL 215

Query: 204 VLKSGYQSDLCLESALMDMYSKCSCVEDACRIFDSAEEVDEISMTVILVGFAQNGFEQEA 383
           V+K    S+  + + L++MYSKC  ++++ ++F+     + +S   ++  FA++G    A
Sbjct: 216 VIKRSLGSNPFVGNGLINMYSKCGELQESIKVFNGLTCRNSVSWNSMIAAFARHGDGFRA 275

Query: 384 INIFVKMLKAG 416
           + ++ +M++ G
Sbjct: 276 LRLYEEMIQEG 286


>ref|XP_002319538.1| predicted protein [Populus trichocarpa] gi|222857914|gb|EEE95461.1|
           predicted protein [Populus trichocarpa]
          Length = 577

 Score =  221 bits (562), Expect = 6e-56
 Identities = 114/172 (66%), Positives = 134/172 (77%), Gaps = 3/172 (1%)
 Frame = +3

Query: 3   EMFVTNVITWTAVISGLAQSEFCEESLRLFWEMRREFVEPNSLTYSSSLLACSGLRALSE 182
           EM   NVITWTA+ISGL QSE   +SLRLF EM    VEPNSLTY SSL+ACSGL+AL E
Sbjct: 119 EMLERNVITWTAIISGLVQSELYRDSLRLFVEMTNGLVEPNSLTYLSSLMACSGLQALRE 178

Query: 183 GRQIHGVVLKSGYQSDLCLESALMDMYSKCSCVEDACRIFDSAEEVDEISMTVILVGFAQ 362
           G QIHG V K G QSD C+ESALMDMYSKC  + D  +IF+SA ++D++SMT+IL GFAQ
Sbjct: 179 GCQIHGRVWKLGLQSDFCVESALMDMYSKCGSMGDTLQIFESAGQLDKVSMTIILAGFAQ 238

Query: 363 NGFEQEAINIFVKMLKAGNRIDSNLVSAVL---GADVHLSLGKQIHSLAVKK 509
           NGFE+EA+  FVKML+AG  IDSN+VSAVL   GAD  L LG+QIHSL +K+
Sbjct: 239 NGFEEEAMQFFVKMLEAGTEIDSNMVSAVLGVFGADTSLGLGQQIHSLVIKR 290



 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 41/151 (27%), Positives = 81/151 (53%)
 Frame = +3

Query: 24  ITWTAVISGLAQSEFCEESLRLFWEMRREFVEPNSLTYSSSLLACSGLRALSEGRQIHGV 203
           ++ T +++G AQ+ F EE+++ F +M     E +S   S+ L       +L  G+QIH +
Sbjct: 227 VSMTIILAGFAQNGFEEEAMQFFVKMLEAGTEIDSNMVSAVLGVFGADTSLGLGQQIHSL 286

Query: 204 VLKSGYQSDLCLESALMDMYSKCSCVEDACRIFDSAEEVDEISMTVILVGFAQNGFEQEA 383
           V+K  + S+  + + L++MYSKC  +ED+ ++F     ++ +S   ++  FA++G    A
Sbjct: 287 VIKRSFGSNPFVGNGLINMYSKCGDLEDSTKVFSRMPCMNSVSWNSMIAAFARHGDGSRA 346

Query: 384 INIFVKMLKAGNRIDSNLVSAVLGADVHLSL 476
           + ++ +M   G         ++L A  H+ L
Sbjct: 347 LQLYKEMRLKGVEPTDVTFLSLLHACSHVGL 377



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 32/135 (23%), Positives = 67/135 (49%), Gaps = 1/135 (0%)
 Frame = +3

Query: 3   EMFVTNVITWTAVISGLAQSEFCEESLRLFWEMRR-EFVEPNSLTYSSSLLACSGLRALS 179
           EM + + ++W  +ISG  +    +     F +M+   F   +  T ++ L AC       
Sbjct: 17  EMPMRDTVSWNIMISGFLKDGSFDVGFGFFKQMQSLGFYRLDQATLTTILSACDRPELGF 76

Query: 180 EGRQIHGVVLKSGYQSDLCLESALMDMYSKCSCVEDACRIFDSAEEVDEISMTVILVGFA 359
             + +H + + +G+Q ++ + +AL+  Y KC       ++FD   E + I+ T I+ G  
Sbjct: 77  VNKMVHCLAVLNGFQREISVGNALITSYFKCGFSSSGMQVFDEMLERNVITWTAIISGLV 136

Query: 360 QNGFEQEAINIFVKM 404
           Q+   ++++ +FV+M
Sbjct: 137 QSELYRDSLRLFVEM 151


>ref|XP_003520812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Glycine max]
          Length = 753

 Score =  219 bits (557), Expect = 2e-55
 Identities = 110/172 (63%), Positives = 138/172 (80%), Gaps = 3/172 (1%)
 Frame = +3

Query: 3   EMFVTNVITWTAVISGLAQSEFCEESLRLFWEMRREFVEPNSLTYSSSLLACSGLRALSE 182
           EM   NV+TWTAVISGLAQ+EF E+ LRLF +MRR  V PNSLTY S+L+ACSGL+AL E
Sbjct: 48  EMLERNVVTWTAVISGLAQNEFYEDGLRLFDQMRRGSVSPNSLTYLSALMACSGLQALLE 107

Query: 183 GRQIHGVVLKSGYQSDLCLESALMDMYSKCSCVEDACRIFDSAEEVDEISMTVILVGFAQ 362
           GR+IHG++ K G QSDLC+ESALMD+YSKC  +E+A  IF+SAEE+D++S+TVILV F Q
Sbjct: 108 GRKIHGLLWKLGMQSDLCIESALMDLYSKCGSLEEAWEIFESAEELDDVSLTVILVAFMQ 167

Query: 363 NGFEQEAINIFVKMLKAGNRIDSNLVSAVL---GADVHLSLGKQIHSLAVKK 509
           NG E+EAI IF++M+K G  +D N+VSA+L   G    L+LGKQIHSL +KK
Sbjct: 168 NGLEEEAIQIFMRMVKLGIEVDPNMVSAILGVFGVGTSLTLGKQIHSLIIKK 219



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 37/154 (24%), Positives = 80/154 (51%), Gaps = 3/154 (1%)
 Frame = +3

Query: 24  ITWTAVISGLAQSEFCEESLRLFWEMRREFVE--PNSLTYSSSLLACSGL-RALSEGRQI 194
           ++ T ++    Q+   EE++++F  M +  +E  PN +   S++L   G+  +L+ G+QI
Sbjct: 156 VSLTVILVAFMQNGLEEEAIQIFMRMVKLGIEVDPNMV---SAILGVFGVGTSLTLGKQI 212

Query: 195 HGVVLKSGYQSDLCLESALMDMYSKCSCVEDACRIFDSAEEVDEISMTVILVGFAQNGFE 374
           H +++K  +  +L + + L++MYSKC  + D+ ++F    + + +S   ++  +A+ G  
Sbjct: 213 HSLIIKKNFIQNLFVSNGLINMYSKCGDLYDSLQVFHEMTQKNSVSWNSVIAAYARYGDG 272

Query: 375 QEAINIFVKMLKAGNRIDSNLVSAVLGADVHLSL 476
             A+  +  M   G  +      ++L A  H  L
Sbjct: 273 FRALQFYDDMRVEGIALTDVTFLSLLHACSHAGL 306