BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00028920
         (314 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat...   111   7e-23
ref|XP_002887547.1| pentatricopeptide repeat-containing protein ...   107   1e-21
ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat...   107   1e-21
ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...   105   4e-21
ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat...   105   4e-21

>ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera] gi|297733985|emb|CBI15232.3|
           unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  111 bits (277), Expect = 7e-23
 Identities = 52/75 (69%), Positives = 62/75 (82%)
 Frame = +3

Query: 90  MRPNLLPHHVVAVVKCQKDPLRALEMFNSAAKEDGFKHTVYTYKCMVEKLGLHGKFEAME 269
           M P LLP HV AVVK QK+PL+ALE+FNS  KEDGFKHT+ TYK M+EKLG HG+FEAME
Sbjct: 1   MSPALLPKHVAAVVKYQKNPLKALEIFNSVKKEDGFKHTLLTYKGMIEKLGFHGEFEAME 60

Query: 270 GVMSEMRRNVDNGLM 314
            V++E R N+DNGL+
Sbjct: 61  EVLAETRMNIDNGLL 75


>ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297333388|gb|EFH63806.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 763

 Score =  107 bits (267), Expect = 1e-21
 Identities = 48/75 (64%), Positives = 62/75 (82%)
 Frame = +3

Query: 90  MRPNLLPHHVVAVVKCQKDPLRALEMFNSAAKEDGFKHTVYTYKCMVEKLGLHGKFEAME 269
           M P LLP HV  V++CQKDP++ALEMFNS  KEDGFKHT+ TY+ ++EKLGL+GKFEAME
Sbjct: 1   MGPPLLPKHVTTVIRCQKDPMKALEMFNSMRKEDGFKHTLSTYRSIIEKLGLYGKFEAME 60

Query: 270 GVMSEMRRNVDNGLM 314
            V+ +MR+NV N ++
Sbjct: 61  EVLVDMRQNVGNHML 75


>ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  107 bits (266), Expect = 1e-21
 Identities = 51/75 (68%), Positives = 59/75 (78%)
 Frame = +3

Query: 90  MRPNLLPHHVVAVVKCQKDPLRALEMFNSAAKEDGFKHTVYTYKCMVEKLGLHGKFEAME 269
           M   LLP HV AVVK Q DPL+ALEMFNSA  EDGFKHT  TYKC+V+KLG HG+FE ME
Sbjct: 1   MSRTLLPKHVAAVVKIQTDPLKALEMFNSAKSEDGFKHTASTYKCIVQKLGHHGEFEEME 60

Query: 270 GVMSEMRRNVDNGLM 314
            ++SEMR NV+N L+
Sbjct: 61  KLLSEMRENVNNALL 75


>ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  105 bits (262), Expect = 4e-21
 Identities = 48/75 (64%), Positives = 59/75 (78%)
 Frame = +3

Query: 90  MRPNLLPHHVVAVVKCQKDPLRALEMFNSAAKEDGFKHTVYTYKCMVEKLGLHGKFEAME 269
           M   L P HV AV++ Q DPL AL+MFN    EDGFKHT+ TYKCM+EKLGLHGKFEAME
Sbjct: 1   MNRALQPKHVAAVIRYQNDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAME 60

Query: 270 GVMSEMRRNVDNGLM 314
            V++EMR+NVD+ ++
Sbjct: 61  DVLAEMRKNVDSKML 75


>ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  105 bits (262), Expect = 4e-21
 Identities = 48/75 (64%), Positives = 59/75 (78%)
 Frame = +3

Query: 90  MRPNLLPHHVVAVVKCQKDPLRALEMFNSAAKEDGFKHTVYTYKCMVEKLGLHGKFEAME 269
           M   L P HV AV++ Q DPL AL+MFN    EDGFKHT+ TYKCM+EKLGLHGKFEAME
Sbjct: 1   MNRALQPKHVAAVIRYQNDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAME 60

Query: 270 GVMSEMRRNVDNGLM 314
            V++EMR+NVD+ ++
Sbjct: 61  DVLAEMRKNVDSKML 75