BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00028851
         (354 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAA73803.1| reverse transcriptase [Allium cepa]                   124   6e-27
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   124   6e-27
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   121   7e-26
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta...   115   4e-24
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas...   114   6e-24

>emb|CAA73803.1| reverse transcriptase [Allium cepa]
          Length = 137

 Score =  124 bits (312), Expect = 6e-27
 Identities = 54/109 (49%), Positives = 80/109 (73%)
 Frame = -2

Query: 329 TDLRPIALCNTTYKCVAKIITNRLKPIMSSLVDTNQSAFIAGRSIQDNLLLSHELLRNYT 150
           T  RPI+ CNT YKC++K++ +RLK ++ +LV  NQ+A+++GR+I D++LLSHEL++ Y 
Sbjct: 1   TKFRPISCCNTIYKCISKVLASRLKHVLPTLVSPNQAAYLSGRNILDHVLLSHELIKGYK 60

Query: 149 RKHASPRCTLKVDISKAFDTVSWMALEAMMRRLRFPPKITCWIKLCFSS 3
           RK A+PR  LK+DI KAFDT+ W ++  ++  + FPP I  WI  C SS
Sbjct: 61  RKSATPRAMLKLDIMKAFDTLQWNSIVRILGYMNFPPHIIAWIYECISS 109


>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  124 bits (312), Expect = 6e-27
 Identities = 56/117 (47%), Positives = 80/117 (68%)
 Frame = -2

Query: 353 EIPNASKVTDLRPIALCNTTYKCVAKIITNRLKPIMSSLVDTNQSAFIAGRSIQDNLLLS 174
           ++ +A++V + RPIA C   YK ++K++TNR+K I+  +V+  QS FI GR I DN+LL+
Sbjct: 504 KVQHATRVKEFRPIACCTVIYKIISKMLTNRMKGIIGEVVNEAQSGFIPGRHIADNILLA 563

Query: 173 HELLRNYTRKHASPRCTLKVDISKAFDTVSWMALEAMMRRLRFPPKITCWIKLCFSS 3
            EL+R YTRKH SPRC +KVDI KA+D+V W  LE ++    FP +   WI  C S+
Sbjct: 564 SELIRGYTRKHMSPRCIMKVDIRKAYDSVEWSFLETLLYEFGFPSRFVGWIMECVST 620


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  121 bits (303), Expect = 7e-26
 Identities = 55/114 (48%), Positives = 77/114 (67%)
 Frame = -2

Query: 353 EIPNASKVTDLRPIALCNTTYKCVAKIITNRLKPIMSSLVDTNQSAFIAGRSIQDNLLLS 174
           +I  A    D RPIA C+T YK ++KI+T RL+ +++ +VD  Q+ FI  R I DN+LL+
Sbjct: 507 KIDEAKHAKDYRPIACCSTLYKIISKILTKRLQAVITEVVDCAQTGFIPERHIGDNILLA 566

Query: 173 HELLRNYTRKHASPRCTLKVDISKAFDTVSWMALEAMMRRLRFPPKITCWIKLC 12
            EL+R Y R+H SPRC +KVDI KA+D+V W+ LE+M++ L FP     WI  C
Sbjct: 567 TELIRGYNRRHVSPRCVIKVDIRKAYDSVEWVFLESMLKELGFPSMFIRWIMAC 620


>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1277

 Score =  115 bits (288), Expect = 4e-24
 Identities = 53/113 (46%), Positives = 77/113 (68%)
 Frame = -2

Query: 341  ASKVTDLRPIALCNTTYKCVAKIITNRLKPIMSSLVDTNQSAFIAGRSIQDNLLLSHELL 162
            A+ + D RPI+ CN  YK ++KII NRLK ++ + +  NQSAF+  R + +N+LL+ EL+
Sbjct: 665  ATLMRDYRPISCCNVIYKVISKIIANRLKVMLPTFILQNQSAFVRERLLMENVLLATELV 724

Query: 161  RNYTRKHASPRCTLKVDISKAFDTVSWMALEAMMRRLRFPPKITCWIKLCFSS 3
            ++Y +   SPRC +K+DISKAFD+V W  L   +  L+FP K   WIKLC S+
Sbjct: 725  KDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALKFPEKFRHWIKLCIST 777


>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 402

 Score =  114 bits (286), Expect = 6e-24
 Identities = 49/114 (42%), Positives = 81/114 (71%)
 Frame = -2

Query: 344 NASKVTDLRPIALCNTTYKCVAKIITNRLKPIMSSLVDTNQSAFIAGRSIQDNLLLSHEL 165
           N + V + RPIA C+  YK ++KI+T+R++ +++S+V  NQSAF+ GR I DN++LSHEL
Sbjct: 190 NVTSVKNFRPIACCSVIYKIISKILTSRMQGVLNSVVSENQSAFVKGRVIFDNIILSHEL 249

Query: 164 LRNYTRKHASPRCTLKVDISKAFDTVSWMALEAMMRRLRFPPKITCWIKLCFSS 3
           +++Y+RK  SPRC +K+D+ KA+++V W  ++ +M  L F  K   W+  C ++
Sbjct: 250 VKSYSRKGISPRCMVKIDLQKAYNSVEWPFIKHLMLELGFSYKFVNWVMGCLTT 303