BLASTX nr result

ID: Coptis21_contig00028844 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00028844
         (195 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004162448.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP...   107   8e-22
ref|XP_004136163.1| PREDICTED: probable ATP-dependent RNA helica...   107   8e-22
ref|XP_003609690.1| Pre-mRNA-splicing factor ATP-dependent RNA h...   104   7e-21
emb|CBI36896.3| unnamed protein product [Vitis vinifera]              104   7e-21
ref|XP_002268905.1| PREDICTED: probable ATP-dependent RNA helica...   104   7e-21

>ref|XP_004162448.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
           DHX37-like [Cucumis sativus]
          Length = 1333

 Score =  107 bits (268), Expect = 8e-22
 Identities = 53/58 (91%), Positives = 57/58 (98%)
 Frame = +1

Query: 22  GGLHVLPLYAMLPAAAQLRVFDKVKEGERLLVVATNVAETSLTIPGVKYVVDTGREKV 195
           G LHVLPLYAMLPAAAQLRVF++VKEGERL+VVATNVAETSLTIPG+KYVVDTGREKV
Sbjct: 708 GALHVLPLYAMLPAAAQLRVFEEVKEGERLVVVATNVAETSLTIPGIKYVVDTGREKV 765


>ref|XP_004136163.1| PREDICTED: probable ATP-dependent RNA helicase DHX37-like [Cucumis
           sativus]
          Length = 1333

 Score =  107 bits (268), Expect = 8e-22
 Identities = 53/58 (91%), Positives = 57/58 (98%)
 Frame = +1

Query: 22  GGLHVLPLYAMLPAAAQLRVFDKVKEGERLLVVATNVAETSLTIPGVKYVVDTGREKV 195
           G LHVLPLYAMLPAAAQLRVF++VKEGERL+VVATNVAETSLTIPG+KYVVDTGREKV
Sbjct: 708 GALHVLPLYAMLPAAAQLRVFEEVKEGERLVVVATNVAETSLTIPGIKYVVDTGREKV 765


>ref|XP_003609690.1| Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 [Medicago
           truncatula] gi|355510745|gb|AES91887.1|
           Pre-mRNA-splicing factor ATP-dependent RNA helicase
           prp16 [Medicago truncatula]
          Length = 1256

 Score =  104 bits (260), Expect = 7e-21
 Identities = 53/58 (91%), Positives = 55/58 (94%)
 Frame = +1

Query: 22  GGLHVLPLYAMLPAAAQLRVFDKVKEGERLLVVATNVAETSLTIPGVKYVVDTGREKV 195
           G L VLPLYAMLPAAAQLRVFD VKEGERL+VVATNVAETSLTIPG+KYVVDTGREKV
Sbjct: 616 GALFVLPLYAMLPAAAQLRVFDGVKEGERLVVVATNVAETSLTIPGIKYVVDTGREKV 673


>emb|CBI36896.3| unnamed protein product [Vitis vinifera]
          Length = 1098

 Score =  104 bits (260), Expect = 7e-21
 Identities = 52/59 (88%), Positives = 57/59 (96%)
 Frame = +1

Query: 19  AGGLHVLPLYAMLPAAAQLRVFDKVKEGERLLVVATNVAETSLTIPGVKYVVDTGREKV 195
           AG L VLPLYAMLPAAAQLRVF+++KEGERL+VVATNVAETSLTIPG+KYVVDTGREKV
Sbjct: 545 AGALCVLPLYAMLPAAAQLRVFEEIKEGERLVVVATNVAETSLTIPGIKYVVDTGREKV 603


>ref|XP_002268905.1| PREDICTED: probable ATP-dependent RNA helicase DHX37-like [Vitis
           vinifera]
          Length = 1414

 Score =  104 bits (260), Expect = 7e-21
 Identities = 52/59 (88%), Positives = 57/59 (96%)
 Frame = +1

Query: 19  AGGLHVLPLYAMLPAAAQLRVFDKVKEGERLLVVATNVAETSLTIPGVKYVVDTGREKV 195
           AG L VLPLYAMLPAAAQLRVF+++KEGERL+VVATNVAETSLTIPG+KYVVDTGREKV
Sbjct: 786 AGALCVLPLYAMLPAAAQLRVFEEIKEGERLVVVATNVAETSLTIPGIKYVVDTGREKV 844


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