BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00028778
         (1070 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511816.1| pentatricopeptide repeat-containing protein,...   244   3e-62
ref|XP_002265876.1| PREDICTED: pentatricopeptide repeat-containi...   243   8e-62
emb|CAN79718.1| hypothetical protein VITISV_012741 [Vitis vinifera]   243   8e-62
ref|XP_002331436.1| predicted protein [Populus trichocarpa] gi|2...   241   2e-61
gb|ABA18097.1| pentatricopeptide repeat protein [Olimarabidopsis...   226   1e-56

>ref|XP_002511816.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223548996|gb|EEF50485.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 427

 Score =  244 bits (622), Expect = 3e-62
 Identities = 117/161 (72%), Positives = 134/161 (83%)
 Frame = -1

Query: 1070 VGNLLWNFLLLSYAANFKMKSLQREFLNMVEAGFSPDLTTFNIRALAFSRMSLFWDLHVS 891
            VGNL+WNFLLLS+AANFKMKSLQREFL M+EAGF PD+TTFNIRALAFSRMSL WDLH++
Sbjct: 267  VGNLIWNFLLLSFAANFKMKSLQREFLRMLEAGFHPDVTTFNIRALAFSRMSLLWDLHLT 326

Query: 890  LEHMKHEKVTPDLVTYGCIVDAYLDRKLGRNLNFALNKMSTDDSPHVSTDPLVFEVFGKG 711
            LEHMKHEKV+PD+VTYGCIVDAYLDR+LG+NL+FA+ KM+ D SP + TDP VFEV GKG
Sbjct: 327  LEHMKHEKVSPDIVTYGCIVDAYLDRRLGKNLDFAIKKMNLDGSPVLLTDPFVFEVLGKG 386

Query: 710  DFHSSSEVLLEYKTRRKSTXXXXXXXXXXXXYRCNQIFWNY 588
            DFHSS+E  LE+K +RK T            YR NQIFWNY
Sbjct: 387  DFHSSAEAFLEFKRQRKWTYRELVSIYLRKQYRSNQIFWNY 427


>ref|XP_002265876.1| PREDICTED: pentatricopeptide repeat-containing protein At3g42630
            [Vitis vinifera] gi|297736023|emb|CBI24061.3| unnamed
            protein product [Vitis vinifera]
          Length = 423

 Score =  243 bits (619), Expect = 8e-62
 Identities = 122/161 (75%), Positives = 130/161 (80%)
 Frame = -1

Query: 1070 VGNLLWNFLLLSYAANFKMKSLQREFLNMVEAGFSPDLTTFNIRALAFSRMSLFWDLHVS 891
            VGNLLWN LLLSYAANFKMKSLQREFL MVEAGF+PDLTTFNIRALAFSRMSLFWDLH+S
Sbjct: 263  VGNLLWNLLLLSYAANFKMKSLQREFLEMVEAGFAPDLTTFNIRALAFSRMSLFWDLHLS 322

Query: 890  LEHMKHEKVTPDLVTYGCIVDAYLDRKLGRNLNFALNKMSTDDSPHVSTDPLVFEVFGKG 711
            LEHM+H KV  DLVTYGC+VDAYLDR+LG+NL+FAL KM+ DDSP VSTD  VFEV GKG
Sbjct: 323  LEHMQHVKVVADLVTYGCVVDAYLDRRLGKNLDFALKKMNMDDSPLVSTDHFVFEVLGKG 382

Query: 710  DFHSSSEVLLEYKTRRKSTXXXXXXXXXXXXYRCNQIFWNY 588
            DFHSSSE  LE K   K T            YR NQIFWNY
Sbjct: 383  DFHSSSEAFLESKRNGKWTYRKLIATYLKKKYRSNQIFWNY 423


>emb|CAN79718.1| hypothetical protein VITISV_012741 [Vitis vinifera]
          Length = 446

 Score =  243 bits (619), Expect = 8e-62
 Identities = 122/161 (75%), Positives = 130/161 (80%)
 Frame = -1

Query: 1070 VGNLLWNFLLLSYAANFKMKSLQREFLNMVEAGFSPDLTTFNIRALAFSRMSLFWDLHVS 891
            VGNLLWN LLLSYAANFKMKSLQREFL MVEAGF+PDLTTFNIRALAFSRMSLFWDLH+S
Sbjct: 286  VGNLLWNLLLLSYAANFKMKSLQREFLEMVEAGFAPDLTTFNIRALAFSRMSLFWDLHLS 345

Query: 890  LEHMKHEKVTPDLVTYGCIVDAYLDRKLGRNLNFALNKMSTDDSPHVSTDPLVFEVFGKG 711
            LEHM+H KV  DLVTYGC+VDAYLDR+LG+NL+FAL KM+ DDSP VSTD  VFEV GKG
Sbjct: 346  LEHMQHVKVVADLVTYGCVVDAYLDRRLGKNLDFALKKMNMDDSPLVSTDHFVFEVLGKG 405

Query: 710  DFHSSSEVLLEYKTRRKSTXXXXXXXXXXXXYRCNQIFWNY 588
            DFHSSSE  LE K   K T            YR NQIFWNY
Sbjct: 406  DFHSSSEAFLESKRNGKWTYRKLIATYLKKKYRSNQIFWNY 446


>ref|XP_002331436.1| predicted protein [Populus trichocarpa] gi|222873650|gb|EEF10781.1|
            predicted protein [Populus trichocarpa]
          Length = 428

 Score =  241 bits (616), Expect = 2e-61
 Identities = 116/161 (72%), Positives = 131/161 (81%)
 Frame = -1

Query: 1070 VGNLLWNFLLLSYAANFKMKSLQREFLNMVEAGFSPDLTTFNIRALAFSRMSLFWDLHVS 891
            +GNL+WN LLLSY+ANFKMK+LQREFLNM+EAGF PDLTTFNIRALAFSRMSL WDLH+ 
Sbjct: 268  LGNLIWNLLLLSYSANFKMKTLQREFLNMLEAGFHPDLTTFNIRALAFSRMSLLWDLHLG 327

Query: 890  LEHMKHEKVTPDLVTYGCIVDAYLDRKLGRNLNFALNKMSTDDSPHVSTDPLVFEVFGKG 711
            LEHMKH+KV PDLVTYGCIVDAYLDR+L RNL FAL+KM  D+SP +STDP VFEVFGKG
Sbjct: 328  LEHMKHDKVAPDLVTYGCIVDAYLDRRLVRNLEFALSKMHVDNSPVLSTDPFVFEVFGKG 387

Query: 710  DFHSSSEVLLEYKTRRKSTXXXXXXXXXXXXYRCNQIFWNY 588
            DFHSSSE  +E+K +RK T            +R   IFWNY
Sbjct: 388  DFHSSSEAFMEFKRQRKWTYRELIKIYLRKQHRSKHIFWNY 428


>gb|ABA18097.1| pentatricopeptide repeat protein [Olimarabidopsis pumila]
          Length = 424

 Score =  226 bits (575), Expect = 1e-56
 Identities = 107/161 (66%), Positives = 127/161 (78%)
 Frame = -1

Query: 1070 VGNLLWNFLLLSYAANFKMKSLQREFLNMVEAGFSPDLTTFNIRALAFSRMSLFWDLHVS 891
            +GNLLWN +LLSYAA+FKMKSLQREF+ M++AGFSPDLTTFNIRALAFSRM+LFWDLH++
Sbjct: 264  LGNLLWNSVLLSYAADFKMKSLQREFIGMLDAGFSPDLTTFNIRALAFSRMALFWDLHLT 323

Query: 890  LEHMKHEKVTPDLVTYGCIVDAYLDRKLGRNLNFALNKMSTDDSPHVSTDPLVFEVFGKG 711
            LEHM+   + PDLVT+GC+VDAY+DR+L RNL F  N+M+ DDSP V TDPLVFEV GKG
Sbjct: 324  LEHMRRLNIVPDLVTFGCVVDAYMDRRLARNLEFVYNRMNLDDSPVVLTDPLVFEVLGKG 383

Query: 710  DFHSSSEVLLEYKTRRKSTXXXXXXXXXXXXYRCNQIFWNY 588
            DFH SSE +LE+  R K T             R +QIFWNY
Sbjct: 384  DFHLSSEAVLEFSPREKWTYRKLIGVYLKKKLRRDQIFWNY 424