BLASTX nr result
ID: Coptis21_contig00028775
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00028775
(401 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EJT79008.1| ubiquitin-60S ribosomal protein L40 [Gaeumannomyc... 117 8e-25
gb|EIW62510.1| ubiquitin 10.1 [Trametes versicolor FP-101664 SS1] 117 1e-24
dbj|BAB63444.1| ubiquitin 3 [Physarum polycephalum] gi|19909904|... 117 1e-24
dbj|BAB63443.1| ubiquitin 2 [Physarum polycephalum] gi|19909902|... 117 1e-24
dbj|BAB63445.1| ubiquitin 4 [Physarum polycephalum] gi|19909906|... 117 1e-24
>gb|EJT79008.1| ubiquitin-60S ribosomal protein L40 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 163
Score = 117 bits (294), Expect = 8e-25
Identities = 56/100 (56%), Positives = 76/100 (76%)
Frame = +1
Query: 61 KWDFQRILYESKISDNYNTQEE*TMKILVSTQTGKKITFQVQSSNTIGSLKTKVQDKEGI 240
+WDF R+ + + + + M+I V T TGK IT +V+SS+TI ++K+K+QDKEGI
Sbjct: 14 RWDFSRLFIDDQNKSPFTKTAK--MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGI 71
Query: 241 PPDQQRLVFSGKELEDGQTLSDYNIQNGSVVFLILRLRGG 360
PPDQQRL+F+GK+LEDG+TLSDYNIQ S + L+LRLRGG
Sbjct: 72 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111
>gb|EIW62510.1| ubiquitin 10.1 [Trametes versicolor FP-101664 SS1]
Length = 463
Score = 117 bits (292), Expect = 1e-24
Identities = 63/114 (55%), Positives = 81/114 (71%), Gaps = 16/114 (14%)
Frame = +1
Query: 67 DFQRILYESKISDN------YNTQEE*T----------MKILVSTQTGKKITFQVQSSNT 198
D QR+++ SK D+ YN Q+E T M+I V T TGK IT +V+SS+T
Sbjct: 349 DRQRLIFASKQLDDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT 408
Query: 199 IGSLKTKVQDKEGIPPDQQRLVFSGKELEDGQTLSDYNIQNGSVVFLILRLRGG 360
I ++K K+QDKEGIPPDQQRL+F+GK+LEDG+TLSDYNIQ S + L+LRLRGG
Sbjct: 409 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 462
Score = 114 bits (285), Expect = 8e-24
Identities = 63/115 (54%), Positives = 81/115 (70%), Gaps = 17/115 (14%)
Frame = +1
Query: 67 DFQRILYESK-------ISDNYNTQEE*T----------MKILVSTQTGKKITFQVQSSN 195
D QR+++ K +SD YN Q+E T M+I V T TGK IT +V+SS+
Sbjct: 39 DQQRLIFAGKQLEDGRTLSD-YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSD 97
Query: 196 TIGSLKTKVQDKEGIPPDQQRLVFSGKELEDGQTLSDYNIQNGSVVFLILRLRGG 360
TI ++K K+QDKEGIPPDQQRL+F+GK+LEDG+TLSDYNIQ S + L+LRLRGG
Sbjct: 98 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 114 bits (285), Expect = 8e-24
Identities = 63/115 (54%), Positives = 81/115 (70%), Gaps = 17/115 (14%)
Frame = +1
Query: 67 DFQRILYESK-------ISDNYNTQEE*T----------MKILVSTQTGKKITFQVQSSN 195
D QR+++ K +SD YN Q+E T M+I V T TGK IT +V+SS+
Sbjct: 115 DQQRLIFAGKQLEDGRTLSD-YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSD 173
Query: 196 TIGSLKTKVQDKEGIPPDQQRLVFSGKELEDGQTLSDYNIQNGSVVFLILRLRGG 360
TI ++K K+QDKEGIPPDQQRL+F+GK+LEDG+TLSDYNIQ S + L+LRLRGG
Sbjct: 174 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
Score = 113 bits (282), Expect = 2e-23
Identities = 66/124 (53%), Positives = 84/124 (67%), Gaps = 17/124 (13%)
Frame = +1
Query: 67 DFQRILYESK-------ISDNYNTQEE*T----------MKILVSTQTGKKITFQVQSSN 195
D QR+++ K +SD YN Q+E T M+I V T TGK IT +V+SS+
Sbjct: 191 DQQRLIFAGKQLEDGRTLSD-YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSD 249
Query: 196 TIGSLKTKVQDKEGIPPDQQRLVFSGKELEDGQTLSDYNIQNGSVVFLILRLRGGGNTLY 375
TI ++K K+QDKEGIPPDQQRL+F+GK+LEDG+TLSDYNIQ S + L+LRLRG L
Sbjct: 250 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGAFRVL- 308
Query: 376 DSSQ 387
DS Q
Sbjct: 309 DSMQ 312
Score = 110 bits (276), Expect = 9e-23
Identities = 52/76 (68%), Positives = 65/76 (85%)
Frame = +1
Query: 133 MKILVSTQTGKKITFQVQSSNTIGSLKTKVQDKEGIPPDQQRLVFSGKELEDGQTLSDYN 312
M+I V T TGK IT +V+SS+TI ++K K+QDKEGIPPDQQRL+F+GK+LEDG+TLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 313 IQNGSVVFLILRLRGG 360
IQ S + L+LRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 92.0 bits (227), Expect = 4e-17
Identities = 54/121 (44%), Positives = 75/121 (61%), Gaps = 23/121 (19%)
Frame = +1
Query: 67 DFQRILYESK-------ISDNYNTQEE*T----------------MKILVSTQTGKKITF 177
D QR+++ K +SD YN Q+E T M+I V G+ IT
Sbjct: 267 DQQRLIFAGKQLEDGRTLSD-YNIQKESTLHLVLRLRGAFRVLDSMQIFVKWLHGRTITL 325
Query: 178 QVQSSNTIGSLKTKVQDKEGIPPDQQRLVFSGKELEDGQTLSDYNIQNGSVVFLILRLRG 357
+V+SS+TI +K K+Q+ EGI PD+QRL+F+ K+L+DG+TLSDYNIQ S + L+LRLRG
Sbjct: 326 EVRSSDTIDDVKAKIQEIEGISPDRQRLIFASKQLDDGRTLSDYNIQKESTLHLVLRLRG 385
Query: 358 G 360
G
Sbjct: 386 G 386
>dbj|BAB63444.1| ubiquitin 3 [Physarum polycephalum] gi|19909904|dbj|BAB87825.1|
polyubiquitin [Physarum polycephalum]
Length = 305
Score = 117 bits (292), Expect = 1e-24
Identities = 65/115 (56%), Positives = 82/115 (71%), Gaps = 17/115 (14%)
Frame = +1
Query: 67 DFQRILYESK-------ISDNYNTQEE*T----------MKILVSTQTGKKITFQVQSSN 195
D QR+++ K +SD YN Q+E T M+I V T TGK IT +V+SS+
Sbjct: 115 DQQRLIFAGKQLEDGRTLSD-YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSD 173
Query: 196 TIGSLKTKVQDKEGIPPDQQRLVFSGKELEDGQTLSDYNIQNGSVVFLILRLRGG 360
TI S+KTK+QDKEGIPPDQQRL+F+GK+LEDG+TLSDYNIQ S + L+LRLRGG
Sbjct: 174 TIESVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
Score = 117 bits (292), Expect = 1e-24
Identities = 65/115 (56%), Positives = 82/115 (71%), Gaps = 17/115 (14%)
Frame = +1
Query: 67 DFQRILYESK-------ISDNYNTQEE*T----------MKILVSTQTGKKITFQVQSSN 195
D QR+++ K +SD YN Q+E T M+I V T TGK IT +V+SS+
Sbjct: 191 DQQRLIFAGKQLEDGRTLSD-YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSD 249
Query: 196 TIGSLKTKVQDKEGIPPDQQRLVFSGKELEDGQTLSDYNIQNGSVVFLILRLRGG 360
TI S+KTK+QDKEGIPPDQQRL+F+GK+LEDG+TLSDYNIQ S + L+LRLRGG
Sbjct: 250 TIESVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304
Score = 115 bits (287), Expect = 5e-24
Identities = 64/115 (55%), Positives = 81/115 (70%), Gaps = 17/115 (14%)
Frame = +1
Query: 67 DFQRILYESK-------ISDNYNTQEE*T----------MKILVSTQTGKKITFQVQSSN 195
D QR+++ K +SD YN +E T M+I V T TGK IT +V+SS+
Sbjct: 39 DQQRLIFAGKQLEDGRTLSD-YNIHKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSD 97
Query: 196 TIGSLKTKVQDKEGIPPDQQRLVFSGKELEDGQTLSDYNIQNGSVVFLILRLRGG 360
TI S+KTK+QDKEGIPPDQQRL+F+GK+LEDG+TLSDYNIQ S + L+LRLRGG
Sbjct: 98 TIESVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 111 bits (278), Expect = 5e-23
Identities = 53/76 (69%), Positives = 65/76 (85%)
Frame = +1
Query: 133 MKILVSTQTGKKITFQVQSSNTIGSLKTKVQDKEGIPPDQQRLVFSGKELEDGQTLSDYN 312
M+I V T TGK IT +V+SS+TI S+KTK+QDKEGIPPDQQRL+F+GK+LEDG+TLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIESVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 313 IQNGSVVFLILRLRGG 360
I S + L+LRLRGG
Sbjct: 61 IHKESTLHLVLRLRGG 76
>dbj|BAB63443.1| ubiquitin 2 [Physarum polycephalum] gi|19909902|dbj|BAB87824.1|
polyubiquitin [Physarum polycephalum]
Length = 229
Score = 117 bits (292), Expect = 1e-24
Identities = 65/115 (56%), Positives = 82/115 (71%), Gaps = 17/115 (14%)
Frame = +1
Query: 67 DFQRILYESK-------ISDNYNTQEE*T----------MKILVSTQTGKKITFQVQSSN 195
D QR+++ K +SD YN Q+E T M+I V T TGK IT +V+SS+
Sbjct: 39 DQQRLIFAGKQLEDGRTLSD-YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSD 97
Query: 196 TIGSLKTKVQDKEGIPPDQQRLVFSGKELEDGQTLSDYNIQNGSVVFLILRLRGG 360
TI S+KTK+QDKEGIPPDQQRL+F+GK+LEDG+TLSDYNIQ S + L+LRLRGG
Sbjct: 98 TIESVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 117 bits (292), Expect = 1e-24
Identities = 65/115 (56%), Positives = 82/115 (71%), Gaps = 17/115 (14%)
Frame = +1
Query: 67 DFQRILYESK-------ISDNYNTQEE*T----------MKILVSTQTGKKITFQVQSSN 195
D QR+++ K +SD YN Q+E T M+I V T TGK IT +V+SS+
Sbjct: 115 DQQRLIFAGKQLEDGRTLSD-YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSD 173
Query: 196 TIGSLKTKVQDKEGIPPDQQRLVFSGKELEDGQTLSDYNIQNGSVVFLILRLRGG 360
TI S+KTK+QDKEGIPPDQQRL+F+GK+LEDG+TLSDYNIQ S + L+LRLRGG
Sbjct: 174 TIESVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
Score = 113 bits (283), Expect = 1e-23
Identities = 54/76 (71%), Positives = 66/76 (86%)
Frame = +1
Query: 133 MKILVSTQTGKKITFQVQSSNTIGSLKTKVQDKEGIPPDQQRLVFSGKELEDGQTLSDYN 312
M+I V T TGK IT +V+SS+TI S+KTK+QDKEGIPPDQQRL+F+GK+LEDG+TLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIESVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 313 IQNGSVVFLILRLRGG 360
IQ S + L+LRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>dbj|BAB63445.1| ubiquitin 4 [Physarum polycephalum] gi|19909906|dbj|BAB87826.1|
polyubiquitin [Physarum polycephalum]
Length = 305
Score = 117 bits (292), Expect = 1e-24
Identities = 65/115 (56%), Positives = 82/115 (71%), Gaps = 17/115 (14%)
Frame = +1
Query: 67 DFQRILYESK-------ISDNYNTQEE*T----------MKILVSTQTGKKITFQVQSSN 195
D QR+++ K +SD YN Q+E T M+I V T TGK IT +V+SS+
Sbjct: 39 DQQRLIFAGKQLEDGRTLSD-YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSD 97
Query: 196 TIGSLKTKVQDKEGIPPDQQRLVFSGKELEDGQTLSDYNIQNGSVVFLILRLRGG 360
TI S+KTK+QDKEGIPPDQQRL+F+GK+LEDG+TLSDYNIQ S + L+LRLRGG
Sbjct: 98 TIESVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 117 bits (292), Expect = 1e-24
Identities = 65/115 (56%), Positives = 82/115 (71%), Gaps = 17/115 (14%)
Frame = +1
Query: 67 DFQRILYESK-------ISDNYNTQEE*T----------MKILVSTQTGKKITFQVQSSN 195
D QR+++ K +SD YN Q+E T M+I V T TGK IT +V+SS+
Sbjct: 115 DQQRLIFAGKQLEDGRTLSD-YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSD 173
Query: 196 TIGSLKTKVQDKEGIPPDQQRLVFSGKELEDGQTLSDYNIQNGSVVFLILRLRGG 360
TI S+KTK+QDKEGIPPDQQRL+F+GK+LEDG+TLSDYNIQ S + L+LRLRGG
Sbjct: 174 TIESVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
Score = 117 bits (292), Expect = 1e-24
Identities = 65/115 (56%), Positives = 82/115 (71%), Gaps = 17/115 (14%)
Frame = +1
Query: 67 DFQRILYESK-------ISDNYNTQEE*T----------MKILVSTQTGKKITFQVQSSN 195
D QR+++ K +SD YN Q+E T M+I V T TGK IT +V+SS+
Sbjct: 191 DQQRLIFAGKQLEDGRTLSD-YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSD 249
Query: 196 TIGSLKTKVQDKEGIPPDQQRLVFSGKELEDGQTLSDYNIQNGSVVFLILRLRGG 360
TI S+KTK+QDKEGIPPDQQRL+F+GK+LEDG+TLSDYNIQ S + L+LRLRGG
Sbjct: 250 TIESVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304
Score = 113 bits (283), Expect = 1e-23
Identities = 54/76 (71%), Positives = 66/76 (86%)
Frame = +1
Query: 133 MKILVSTQTGKKITFQVQSSNTIGSLKTKVQDKEGIPPDQQRLVFSGKELEDGQTLSDYN 312
M+I V T TGK IT +V+SS+TI S+KTK+QDKEGIPPDQQRL+F+GK+LEDG+TLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIESVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 313 IQNGSVVFLILRLRGG 360
IQ S + L+LRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76