BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00028720
         (527 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containi...   169   1e-64
ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containi...   160   6e-62
ref|XP_002308660.1| predicted protein [Populus trichocarpa] gi|2...   160   2e-60
ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group] g...   160   9e-58
gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]        154   1e-57

>ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
           gi|296082021|emb|CBI21026.3| unnamed protein product
           [Vitis vinifera]
          Length = 583

 Score =  169 bits (429), Expect(2) = 1e-64
 Identities = 83/114 (72%), Positives = 95/114 (83%)
 Frame = -3

Query: 342 KVWDVDEAVRVFHKMSNKTIVSWTSVIVGLAMHGRGAEAVALFEEMKNAGVPPDDVAFIG 163
           K  DVD+A+ +F  MS +TIVSWTSVIVGLAMHGRG EAV+LFEEMK +G+ P+D+AFIG
Sbjct: 258 KCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIG 317

Query: 162 LLSACSHAGLVQEGCHYFSSMTSDFAIVPKIEHYGCMVDLFSRAGLVPKALELV 1
           LLSACSH+GLV+ G  YFS MT  F IVPKIEHYGCMVDL SRAGLV +ALE V
Sbjct: 318 LLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVTEALEFV 371



 Score =  102 bits (253), Expect(2) = 1e-64
 Identities = 50/65 (76%), Positives = 55/65 (84%)
 Frame = -1

Query: 527 VGLFREMQIAGVQADEITMVSVLSACADLGALELGKWVNFYIEKEGVPKAGELCNALIDM 348
           VGLFR+MQIAGV  D++TMVSVLSAC DLGALELGKW+  YIEKE V K  EL NAL+DM
Sbjct: 196 VGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVELSNALVDM 255

Query: 347 FAKCG 333
           FAKCG
Sbjct: 256 FAKCG 260



 Score = 73.6 bits (179), Expect(2) = 5e-14
 Identities = 42/118 (35%), Positives = 67/118 (56%)
 Frame = -3

Query: 357 YRYVCKVWDVDEAVRVFHKMSNKTIVSWTSVIVGLAMHGRGAEAVALFEEMKNAGVPPDD 178
           + Y C    ++ A ++F +M     V+WT++I G A  G+ A AV LF +M+ AGV PDD
Sbjct: 152 HMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDD 211

Query: 177 VAFIGLLSACSHAGLVQEGCHYFSSMTSDFAIVPKIEHYGCMVDLFSRAGLVPKALEL 4
           V  + +LSAC+  G ++ G  +  S      ++  +E    +VD+F++ G V KAL L
Sbjct: 212 VTMVSVLSACTDLGALELG-KWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGL 268



 Score = 28.9 bits (63), Expect(2) = 5e-14
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -1

Query: 497 GVQADEITMVSVLSACADLGALELGKWVNFYIEKEGVPKAGELCNALIDMFAKC 336
           G+  ++     VL ACA L  L LGK V+  + K G      + N ++ M+  C
Sbjct: 104 GISPNKYAFPFVLKACAGLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCC 157


>ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  160 bits (405), Expect(2) = 6e-62
 Identities = 78/114 (68%), Positives = 94/114 (82%)
 Frame = -3

Query: 342 KVWDVDEAVRVFHKMSNKTIVSWTSVIVGLAMHGRGAEAVALFEEMKNAGVPPDDVAFIG 163
           K  DVD AV+VF +M  +TIVSWTS+IVGLAMHGRG EAV +F+EM   GV PDDVAFIG
Sbjct: 380 KCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIG 439

Query: 162 LLSACSHAGLVQEGCHYFSSMTSDFAIVPKIEHYGCMVDLFSRAGLVPKALELV 1
           +LSACSH+GLV +G +YF++M + F+IVPKIEHYGCMVD+ SRAG V +ALE V
Sbjct: 440 VLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFV 493



 Score =  102 bits (254), Expect(2) = 6e-62
 Identities = 49/65 (75%), Positives = 56/65 (86%)
 Frame = -1

Query: 527 VGLFREMQIAGVQADEITMVSVLSACADLGALELGKWVNFYIEKEGVPKAGELCNALIDM 348
           V LFREMQ+ GV  DEITMVSVLSACADLGALELGKW+  YIE++ + ++ ELCNALIDM
Sbjct: 318 VTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKNIMRSVELCNALIDM 377

Query: 347 FAKCG 333
           FAKCG
Sbjct: 378 FAKCG 382



 Score = 65.9 bits (159), Expect(2) = 8e-13
 Identities = 35/106 (33%), Positives = 61/106 (57%)
 Frame = -3

Query: 321 AVRVFHKMSNKTIVSWTSVIVGLAMHGRGAEAVALFEEMKNAGVPPDDVAFIGLLSACSH 142
           A +VF +   K  V+W+++I G A  G  A AV LF EM+  GV PD++  + +LSAC+ 
Sbjct: 286 AKKVFDESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACAD 345

Query: 141 AGLVQEGCHYFSSMTSDFAIVPKIEHYGCMVDLFSRAGLVPKALEL 4
            G ++ G  +  S      I+  +E    ++D+F++ G V +A+++
Sbjct: 346 LGALELG-KWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKV 390



 Score = 32.3 bits (72), Expect(2) = 8e-13
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -1

Query: 518 FREMQIAGVQADEITMVSVLSACADLGALELGKWVNFYIEKEGVPKAGELCNALIDMFAK 339
           +  M+   V  ++ T   VL ACA +  LELG  V+  + K G  +   + N L+ M+  
Sbjct: 215 YNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVKFGFEEDPHVRNTLVHMYCC 274

Query: 338 C 336
           C
Sbjct: 275 C 275


>ref|XP_002308660.1| predicted protein [Populus trichocarpa] gi|222854636|gb|EEE92183.1|
           predicted protein [Populus trichocarpa]
          Length = 487

 Score =  160 bits (404), Expect(2) = 2e-60
 Identities = 78/114 (68%), Positives = 89/114 (78%)
 Frame = -3

Query: 342 KVWDVDEAVRVFHKMSNKTIVSWTSVIVGLAMHGRGAEAVALFEEMKNAGVPPDDVAFIG 163
           K  DVD+A  +F  M  + IVSWTSVI GLAMHGRG EAVA+FEEM  +GV PDDV FIG
Sbjct: 162 KCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIG 221

Query: 162 LLSACSHAGLVQEGCHYFSSMTSDFAIVPKIEHYGCMVDLFSRAGLVPKALELV 1
           LLSACSH+GLV +G  YF SM  DF+IVPKIEHYGCMVD+  RAGLV +AL+ V
Sbjct: 222 LLSACSHSGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFV 275



 Score = 98.2 bits (243), Expect(2) = 2e-60
 Identities = 50/65 (76%), Positives = 52/65 (80%)
 Frame = -1

Query: 527 VGLFREMQIAGVQADEITMVSVLSACADLGALELGKWVNFYIEKEGVPKAGELCNALIDM 348
           + LFREMQI GV  DEITMVSVLSAC  LGALELGKWV  Y+EKE V K  EL NALIDM
Sbjct: 100 INLFREMQIKGVCPDEITMVSVLSACTGLGALELGKWVESYVEKERVQKNVELSNALIDM 159

Query: 347 FAKCG 333
           FAKCG
Sbjct: 160 FAKCG 164



 Score = 67.0 bits (162), Expect(2) = 3e-13
 Identities = 35/109 (32%), Positives = 61/109 (55%)
 Frame = -3

Query: 330 VDEAVRVFHKMSNKTIVSWTSVIVGLAMHGRGAEAVALFEEMKNAGVPPDDVAFIGLLSA 151
           ++ A +VF +M     VSW+++I G    GR ++A+ LF EM+  GV PD++  + +LSA
Sbjct: 65  IEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSA 124

Query: 150 CSHAGLVQEGCHYFSSMTSDFAIVPKIEHYGCMVDLFSRAGLVPKALEL 4
           C+  G ++ G  +  S      +   +E    ++D+F++ G V KA  L
Sbjct: 125 CTGLGALELG-KWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNL 172



 Score = 32.7 bits (73), Expect(2) = 3e-13
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -1

Query: 485 DEITMVSVLSACADLGALELGKWVNFYIEKEGVPKAGELCNALIDMFAKC 336
           ++ T   VL ACA +G L LGK V+  + K G      + N L+ M+  C
Sbjct: 9   NKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCC 58


>ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
           gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza
           sativa Japonica Group] gi|108711802|gb|ABF99597.1|
           expressed protein [Oryza sativa Japonica Group]
           gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa
           Japonica Group] gi|125588431|gb|EAZ29095.1| hypothetical
           protein OsJ_13153 [Oryza sativa Japonica Group]
           gi|215736898|dbj|BAG95827.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 602

 Score =  160 bits (404), Expect(2) = 9e-58
 Identities = 76/116 (65%), Positives = 91/116 (78%)
 Frame = -3

Query: 348 VCKVWDVDEAVRVFHKMSNKTIVSWTSVIVGLAMHGRGAEAVALFEEMKNAGVPPDDVAF 169
           + K  DVD AV VF  M  +++VSWTSVI  LAM GRG EAV +FEEMK AGVPPDDVAF
Sbjct: 275 LAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAF 334

Query: 168 IGLLSACSHAGLVQEGCHYFSSMTSDFAIVPKIEHYGCMVDLFSRAGLVPKALELV 1
           IG+L+ACSHAG+V EGC YF +M  ++ I PKIEHYGCMVD+F RAG+V +A+E V
Sbjct: 335 IGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFV 390



 Score = 89.0 bits (219), Expect(2) = 9e-58
 Identities = 41/65 (63%), Positives = 51/65 (78%)
 Frame = -1

Query: 527 VGLFREMQIAGVQADEITMVSVLSACADLGALELGKWVNFYIEKEGVPKAGELCNALIDM 348
           V LFREMQ  GVQADE+T++ VL+A  DLGALEL +WV  ++E+EG+ K+  LCNALID 
Sbjct: 215 VDLFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDT 274

Query: 347 FAKCG 333
            AKCG
Sbjct: 275 LAKCG 279


>gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
          Length = 619

 Score =  154 bits (390), Expect(2) = 1e-57
 Identities = 76/116 (65%), Positives = 89/116 (76%)
 Frame = -3

Query: 348 VCKVWDVDEAVRVFHKMSNKTIVSWTSVIVGLAMHGRGAEAVALFEEMKNAGVPPDDVAF 169
           + K  D+D A+ VF  M  +TIVSWTSVI  LAM GRG EAVA+FEEMK AGV PDDVAF
Sbjct: 292 LAKCGDLDGAMAVFQGMKERTIVSWTSVIDALAMEGRGKEAVAVFEEMKTAGVRPDDVAF 351

Query: 168 IGLLSACSHAGLVQEGCHYFSSMTSDFAIVPKIEHYGCMVDLFSRAGLVPKALELV 1
           IG+L+ACSHAG+V EG  YF SM   + I PKIEHYGCMVD+F RAG+V +A+E V
Sbjct: 352 IGVLTACSHAGMVDEGYGYFESMRMAYGIDPKIEHYGCMVDMFGRAGMVERAMEFV 407



 Score = 94.0 bits (232), Expect(2) = 1e-57
 Identities = 44/67 (65%), Positives = 54/67 (80%)
 Frame = -1

Query: 527 VGLFREMQIAGVQADEITMVSVLSACADLGALELGKWVNFYIEKEGVPKAGELCNALIDM 348
           VGLFREMQ +GV+ DE+TM+ VL+A ADLGALEL +WV  ++EKEG+ K+  LCNALID 
Sbjct: 232 VGLFREMQASGVRPDEVTMIGVLAAAADLGALELARWVGRFVEKEGIGKSVTLCNALIDA 291

Query: 347 FAKCGML 327
            AKCG L
Sbjct: 292 LAKCGDL 298



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 25/66 (37%), Positives = 43/66 (65%)
 Frame = -3

Query: 324 EAVRVFHKMSNKTIVSWTSVIVGLAMHGRGAEAVALFEEMKNAGVPPDDVAFIGLLSACS 145
           +A  VF +M+  + V+W+++I G    G  ++AV LF EM+ +GV PD+V  IG+L+A +
Sbjct: 199 DARNVFDRMAKSSAVTWSAMIGGYVRSGLSSDAVGLFREMQASGVRPDEVTMIGVLAAAA 258

Query: 144 HAGLVQ 127
             G ++
Sbjct: 259 DLGALE 264