BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00028641
         (512 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002887314.1| F-box family protein [Arabidopsis lyrata sub...   206   1e-51
gb|AAG52341.1|AC011663_20 hypothetical protein; 86186-84430 [Ara...   201   7e-50
ref|NP_564992.1| F-box protein [Arabidopsis thaliana] gi|7516518...   201   7e-50
ref|XP_002273705.1| PREDICTED: F-box protein At1g70590 [Vitis vi...   198   3e-49
ref|XP_002527920.1| conserved hypothetical protein [Ricinus comm...   187   8e-46

>ref|XP_002887314.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297333155|gb|EFH63573.1| F-box family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 345

 Score =  206 bits (525), Expect = 1e-51
 Identities = 105/171 (61%), Positives = 125/171 (73%), Gaps = 7/171 (4%)
 Frame = +1

Query: 13  MKQKTWPAASDGSHFTSLNLYRPTTSEPQTLFHPTPRHTRLNQLPS--SQPSIPPTN--- 177
           MKQ+TWP  S+GS FTSL+  +P   E +T F    R T  +   S  S  S P +N   
Sbjct: 1   MKQRTWPCRSEGSRFTSLSFLKPQEKEKRTRFSSINRATAKSSTSSRSSSSSSPLSNEIG 60

Query: 178 --FSTLPFDILTKIASSFNHPDLKSSSLVCTSWRDALTPLREAMLFVMWGKKFKHGRGGV 351
             FS LPFDIL KIA+ F+HP+L+++S VC SWRDAL PLRE+ML + WGKKFKHGRGGV
Sbjct: 61  GDFSMLPFDILMKIAAPFSHPNLQAASSVCKSWRDALKPLRESMLLLRWGKKFKHGRGGV 120

Query: 352 RRNLEKALDSFMKGVVRGSTLAMVDAGLIYWEMGRKEDGVALYRRAAELGD 504
           R NL+KALDSF+KG  RGSTLAMVDAGL+YWE G KE  ++LYRRAAELGD
Sbjct: 121 RANLDKALDSFLKGAARGSTLAMVDAGLVYWETGEKEKAMSLYRRAAELGD 171


>gb|AAG52341.1|AC011663_20 hypothetical protein; 86186-84430 [Arabidopsis thaliana]
           gi|12325035|gb|AAG52462.1|AC010796_1 hypothetical
           protein; 68316-70072 [Arabidopsis thaliana]
          Length = 364

 Score =  201 bits (510), Expect = 7e-50
 Identities = 100/173 (57%), Positives = 126/173 (72%), Gaps = 9/173 (5%)
 Frame = +1

Query: 13  MKQKTWPAASDGSHFTSLNLYRPTTSEPQTLFHPTPRHTRLNQLPS-----SQPSIPPTN 177
           MKQ+TWP  S+GS F+SL+  +P   + ++      + T  +   S     S  S PP+N
Sbjct: 1   MKQRTWPCRSEGSRFSSLSFLKPHDKDKRSRISSINKATAKSTTSSRSSSSSSSSRPPSN 60

Query: 178 ----FSTLPFDILTKIASSFNHPDLKSSSLVCTSWRDALTPLREAMLFVMWGKKFKHGRG 345
               FS LP+DIL KIA+ F+HP+L+++SLVC SWRDAL PLRE+ML + WGKK+KHGRG
Sbjct: 61  EFGDFSMLPYDILMKIAAPFSHPNLQAASLVCKSWRDALKPLRESMLLIRWGKKYKHGRG 120

Query: 346 GVRRNLEKALDSFMKGVVRGSTLAMVDAGLIYWEMGRKEDGVALYRRAAELGD 504
           GVR NL+KALDSF+KG +RGSTLAMVDAGL+YWE G KE  V LYRRA+ELGD
Sbjct: 121 GVRANLDKALDSFLKGAMRGSTLAMVDAGLVYWERGEKEKAVNLYRRASELGD 173


>ref|NP_564992.1| F-box protein [Arabidopsis thaliana]
           gi|75165183|sp|Q94C27.1|FB84_ARATH RecName: Full=F-box
           protein At1g70590 gi|14335050|gb|AAK59789.1|
           At1g70590/F5A18_23 [Arabidopsis thaliana]
           gi|27363348|gb|AAO11593.1| At1g70590/F5A18_23
           [Arabidopsis thaliana] gi|332196965|gb|AEE35086.1| F-box
           protein [Arabidopsis thaliana]
          Length = 351

 Score =  201 bits (510), Expect = 7e-50
 Identities = 100/173 (57%), Positives = 126/173 (72%), Gaps = 9/173 (5%)
 Frame = +1

Query: 13  MKQKTWPAASDGSHFTSLNLYRPTTSEPQTLFHPTPRHTRLNQLPS-----SQPSIPPTN 177
           MKQ+TWP  S+GS F+SL+  +P   + ++      + T  +   S     S  S PP+N
Sbjct: 1   MKQRTWPCRSEGSRFSSLSFLKPHDKDKRSRISSINKATAKSTTSSRSSSSSSSSRPPSN 60

Query: 178 ----FSTLPFDILTKIASSFNHPDLKSSSLVCTSWRDALTPLREAMLFVMWGKKFKHGRG 345
               FS LP+DIL KIA+ F+HP+L+++SLVC SWRDAL PLRE+ML + WGKK+KHGRG
Sbjct: 61  EFGDFSMLPYDILMKIAAPFSHPNLQAASLVCKSWRDALKPLRESMLLIRWGKKYKHGRG 120

Query: 346 GVRRNLEKALDSFMKGVVRGSTLAMVDAGLIYWEMGRKEDGVALYRRAAELGD 504
           GVR NL+KALDSF+KG +RGSTLAMVDAGL+YWE G KE  V LYRRA+ELGD
Sbjct: 121 GVRANLDKALDSFLKGAMRGSTLAMVDAGLVYWERGEKEKAVNLYRRASELGD 173


>ref|XP_002273705.1| PREDICTED: F-box protein At1g70590 [Vitis vinifera]
          Length = 335

 Score =  198 bits (504), Expect = 3e-49
 Identities = 101/170 (59%), Positives = 124/170 (72%), Gaps = 6/170 (3%)
 Frame = +1

Query: 13  MKQKTWPAASDGSHFTSLNLYRPTTSEPQTLFHPTPRHTRLNQLPSSQPSIP------PT 174
           MKQ+TWP  S+GS FT+L LY  +  + +T         RL     S  +IP       T
Sbjct: 1   MKQRTWPVKSEGSRFTALRLYSGSGKKEET---------RLRSKRYSSITIPFRSSREET 51

Query: 175 NFSTLPFDILTKIASSFNHPDLKSSSLVCTSWRDALTPLREAMLFVMWGKKFKHGRGGVR 354
           +FS LP DIL KIA++F  PDL+++SLVC SWRD+L PLREAML + WGK+FKHG GGVR
Sbjct: 52  DFSKLPDDILQKIAATFTLPDLQTASLVCRSWRDSLRPLREAMLLLKWGKRFKHGHGGVR 111

Query: 355 RNLEKALDSFMKGVVRGSTLAMVDAGLIYWEMGRKEDGVALYRRAAELGD 504
            N++KALDSF+KG  RGSTLAMVDAGLIYWEMG+KE+ +ALYR+AAELGD
Sbjct: 112 PNIQKALDSFLKGAARGSTLAMVDAGLIYWEMGKKEESIALYRKAAELGD 161


>ref|XP_002527920.1| conserved hypothetical protein [Ricinus communis]
           gi|223532695|gb|EEF34477.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 329

 Score =  187 bits (475), Expect = 8e-46
 Identities = 100/169 (59%), Positives = 122/169 (72%), Gaps = 5/169 (2%)
 Frame = +1

Query: 13  MKQKTWPAASDGSHFTSLNLYRPTTSEPQTLFHPTPRHTRLNQLPSSQP---SIPPT--N 177
           MKQ+TWP+ SDGS F SL L       P T+       ++   +PS      S+P    +
Sbjct: 1   MKQRTWPSRSDGSKFKSLPL-------PYTI-------SKREIIPSKSVISFSVPKDGRD 46

Query: 178 FSTLPFDILTKIASSFNHPDLKSSSLVCTSWRDALTPLREAMLFVMWGKKFKHGRGGVRR 357
           FSTLPFDIL KIA+SF  P+L+++SLVC SWRD L PLREAM+F+ WGK+FKHGRGGVR 
Sbjct: 47  FSTLPFDILIKIAASFTLPNLQTASLVCRSWRDGLRPLREAMVFLKWGKRFKHGRGGVRP 106

Query: 358 NLEKALDSFMKGVVRGSTLAMVDAGLIYWEMGRKEDGVALYRRAAELGD 504
           NL+KALDSF+KGV  GS LAMVDAGL+YWEMG K+  +ALY +AAELGD
Sbjct: 107 NLQKALDSFLKGVALGSPLAMVDAGLVYWEMGFKDKAIALYLKAAELGD 155