BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00028630
         (360 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002328140.1| predicted protein [Populus trichocarpa] gi|2...   192   2e-47
ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containi...   187   1e-45
ref|XP_002514406.1| pentatricopeptide repeat-containing protein,...   184   6e-45
ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containi...   176   2e-42
gb|AAO41891.1| putative selenium-binding protein [Arabidopsis th...   174   7e-42

>ref|XP_002328140.1| predicted protein [Populus trichocarpa] gi|222837655|gb|EEE76020.1|
           predicted protein [Populus trichocarpa]
          Length = 534

 Score =  192 bits (488), Expect = 2e-47
 Identities = 93/120 (77%), Positives = 104/120 (86%)
 Frame = +1

Query: 1   LHCSIIKCGLDSDIFVRSALIDIYSKWGELGNGFRVFSEMVTGDLVVWNSIIGGFAQNGN 180
           LHC IIK GLDSD+FVRSALID+YS+WGEL N  RVF EMVTGDLVVW+SII GFAQN +
Sbjct: 85  LHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQNSD 144

Query: 181 CDEALDLFKRMKRAGFPANQATLTSVLRACTGLVLLEFGRQVHAHVIKFERDLIINNAIL 360
            DEAL LFKRMKRAGF A Q TLTSVLRACTGL LLE GRQVH HV+K+++DLI+NNA+L
Sbjct: 145 GDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLKYDQDLILNNALL 204



 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 40/99 (40%), Positives = 58/99 (58%)
 Frame = +1

Query: 1   LHCSIIKCGLDSDIFVRSALIDIYSKWGELGNGFRVFSEMVTGDLVVWNSIIGGFAQNGN 180
           +H  ++K   D D+ + +AL+D+Y K G L +   VF  MV  D++ W+++I G AQNG 
Sbjct: 186 VHVHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGY 243

Query: 181 CDEALDLFKRMKRAGFPANQATLTSVLRACTGLVLLEFG 297
             EAL LF+ MK  G   N  T+  VL AC+   L+E G
Sbjct: 244 SKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEG 282



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
 Frame = +1

Query: 43  FVRSALIDIYSKWGELGNGFRVFSEMVTGDLVVWNSIIGGFAQNGNCDEALDLFKRMKRA 222
           F+ + LI++Y K+G L +   VF +M   ++V W ++I  ++     D+AL+    M R 
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 223 GFPANQATLTSVLRACTGLVLLEFGRQVHAHVIK--FERDLIINNAIL 360
           G   N  T +SVLRAC GL  L   RQ+H  +IK   + D+ + +A++
Sbjct: 61  GVRPNMFTYSSVLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALI 105


>ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  187 bits (474), Expect = 1e-45
 Identities = 90/120 (75%), Positives = 104/120 (86%)
 Frame = +1

Query: 1   LHCSIIKCGLDSDIFVRSALIDIYSKWGELGNGFRVFSEMVTGDLVVWNSIIGGFAQNGN 180
           LHC IIK GL+SD+FVRSALID+YSKW +L N   VF EM T DLVVWNSIIGGFAQN +
Sbjct: 174 LHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSD 233

Query: 181 CDEALDLFKRMKRAGFPANQATLTSVLRACTGLVLLEFGRQVHAHVIKFERDLIINNAIL 360
            +EAL+LFKRMKRAGF A+QATLTSVLRACTGL LLE GRQVH HV+KF++DLI+NNA++
Sbjct: 234 GNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLKFDQDLILNNALI 293



 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 39/99 (39%), Positives = 60/99 (60%)
 Frame = +1

Query: 1   LHCSIIKCGLDSDIFVRSALIDIYSKWGELGNGFRVFSEMVTGDLVVWNSIIGGFAQNGN 180
           +H  ++K   D D+ + +ALID+Y K G L +    FS MV  D++ W++++ G AQNG 
Sbjct: 275 VHVHVLK--FDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGY 332

Query: 181 CDEALDLFKRMKRAGFPANQATLTSVLRACTGLVLLEFG 297
             +AL+LF+ MK +G   N  T+  VL AC+   L+E G
Sbjct: 333 SRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKG 371



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
 Frame = +1

Query: 1   LHCSIIKCGLDSDIFVRSALIDIYSKWGELGNGFRVFSEMVTGDLVVWNSIIGGFAQNGN 180
           +H  I   G +  +FV + L+++Y K+  L     +F EM   ++V W ++I  ++   N
Sbjct: 77  VHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSNKLN 136

Query: 181 CDEALDLFKRMKRAGFPANQATLTSVLRACTGLVLLEFGRQVHAHVIK--FERDLIINNA 354
            D+AL     M R G   N  T +SVLRAC GL  L   RQ+H  +IK   E D+ + +A
Sbjct: 137 -DKALKCLILMFREGVRPNMFTYSSVLRACDGLPNL---RQLHCGIIKTGLESDVFVRSA 192

Query: 355 IL 360
           ++
Sbjct: 193 LI 194


>ref|XP_002514406.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223546503|gb|EEF48002.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 436

 Score =  184 bits (467), Expect = 6e-45
 Identities = 89/120 (74%), Positives = 102/120 (85%)
 Frame = +1

Query: 1   LHCSIIKCGLDSDIFVRSALIDIYSKWGELGNGFRVFSEMVTGDLVVWNSIIGGFAQNGN 180
           LH +IIK GLDSD++VRSALIDIYSKWGE  N   VF+EMVTGDL+VWNSII GFAQN +
Sbjct: 177 LHGNIIKSGLDSDVYVRSALIDIYSKWGESENALYVFNEMVTGDLIVWNSIIAGFAQNND 236

Query: 181 CDEALDLFKRMKRAGFPANQATLTSVLRACTGLVLLEFGRQVHAHVIKFERDLIINNAIL 360
            DEAL+LFK MKR GFPANQ+ LTSVLRACTGL LLE GRQVH HV K ++DL++NNA+L
Sbjct: 237 GDEALNLFKSMKRNGFPANQSALTSVLRACTGLALLELGRQVHVHVFKHDQDLVLNNALL 296



 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 40/89 (44%), Positives = 56/89 (62%)
 Frame = +1

Query: 31  DSDIFVRSALIDIYSKWGELGNGFRVFSEMVTGDLVVWNSIIGGFAQNGNCDEALDLFKR 210
           D D+ + +AL+D+Y K G L +   VF+ MV  D++ W+++I GFAQNG   EAL LF+ 
Sbjct: 286 DQDLVLNNALLDMYCKCGSLEDANYVFTRMVEKDVISWSTMIAGFAQNGYSREALKLFES 345

Query: 211 MKRAGFPANQATLTSVLRACTGLVLLEFG 297
           MK +G   N  T+  VL AC+   LLE G
Sbjct: 346 MKVSGTKPNYITILGVLFACSHAGLLEAG 374



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
 Frame = +1

Query: 25  GLDSDIFVRSALIDIYSKWGELGNGFRVFSEMVTGDLVVWNSIIGGFAQNGNCDEALDLF 204
           G   +IF+ + L+++Y K+  L     +F +M   ++V W ++I  F+     D+AL+  
Sbjct: 87  GYQPNIFLINMLLNMYVKFNLLDEALTLFDQMPERNVVSWTTMISAFSNAKLNDKALEFL 146

Query: 205 KRMKRAGFPANQATLTSVLRACTGLVLLEFGRQVHAHVIK--FERDLIINNAIL 360
             M R G   N  T +S+LRAC G+  L   RQ+H ++IK   + D+ + +A++
Sbjct: 147 ICMLREGVKPNVYTYSSILRACDGVYNL---RQLHGNIIKSGLDSDVYVRSALI 197


>ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
           gi|449475689|ref|XP_004154524.1| PREDICTED:
           pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  176 bits (446), Expect = 2e-42
 Identities = 86/120 (71%), Positives = 102/120 (85%)
 Frame = +1

Query: 1   LHCSIIKCGLDSDIFVRSALIDIYSKWGELGNGFRVFSEMVTGDLVVWNSIIGGFAQNGN 180
           LH SI+K GL+SD+FVRSALID YSK GE  +   VF+EM+TGDLVVWNSIIGGFAQN +
Sbjct: 136 LHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSD 195

Query: 181 CDEALDLFKRMKRAGFPANQATLTSVLRACTGLVLLEFGRQVHAHVIKFERDLIINNAIL 360
            DE L L+KRMKRA F A+Q+TLTSVLRACTGL LLE GRQVH HV+K+++DLI+NNA+L
Sbjct: 196 GDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLKYDQDLILNNALL 255



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
 Frame = +1

Query: 1   LHCSIIKCGLDSDIFVRSALIDIYSKWGELGNGFRVFSEMVTGDLVVWNSIIGGFAQNGN 180
           +H  +   G +   F+ + LI++Y K+G L     +F EM   ++V W ++I  ++ +  
Sbjct: 38  VHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNL 97

Query: 181 CDEALDLFKRMKRAGFPANQATLTSVLRACTGLVLLEFGRQVHAHVIK--FERDLIINNA 354
             +ALD    M R G   N  T +SVLRAC GL+ L   RQ+H  ++K   E D+ + +A
Sbjct: 98  NHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNL---RQLHGSILKVGLESDVFVRSA 154

Query: 355 IL 360
           ++
Sbjct: 155 LI 156



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 37/100 (37%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
 Frame = +1

Query: 1   LHCSIIKCGLDSDIFVRSALIDIYSKWGELGNGFRVFSEMVTG-DLVVWNSIIGGFAQNG 177
           +H  ++K   D D+ + +AL+D+Y K G L +   +F+ M+T  D++ W+++I G AQNG
Sbjct: 237 VHVHVLK--YDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNG 294

Query: 178 NCDEALDLFKRMKRAGFPANQATLTSVLRACTGLVLLEFG 297
              +AL LF+ MK  G   N  T+  VL AC+   L+  G
Sbjct: 295 FSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDG 334


>gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  174 bits (441), Expect = 7e-42
 Identities = 83/120 (69%), Positives = 99/120 (82%)
 Frame = +1

Query: 1   LHCSIIKCGLDSDIFVRSALIDIYSKWGELGNGFRVFSEMVTGDLVVWNSIIGGFAQNGN 180
           LHC IIK GL+SD+FVRSALID+++K GE  +   VF EMVTGD +VWNSIIGGFAQN  
Sbjct: 181 LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSR 240

Query: 181 CDEALDLFKRMKRAGFPANQATLTSVLRACTGLVLLEFGRQVHAHVIKFERDLIINNAIL 360
            D AL+LFKRMKRAGF A QATLTSVLRACTGL LLE G Q H H++K+++DLI+NNA++
Sbjct: 241 SDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALV 300



 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 43/98 (43%), Positives = 61/98 (62%)
 Frame = +1

Query: 4   HCSIIKCGLDSDIFVRSALIDIYSKWGELGNGFRVFSEMVTGDLVVWNSIIGGFAQNGNC 183
           H  I+K   D D+ + +AL+D+Y K G L +  RVF++M   D++ W+++I G AQNG  
Sbjct: 283 HVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYS 340

Query: 184 DEALDLFKRMKRAGFPANQATLTSVLRACTGLVLLEFG 297
            EAL LF+RMK +G   N  T+  VL AC+   LLE G
Sbjct: 341 QEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDG 378