BLASTX nr result

ID: Coptis21_contig00028621 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00028621
         (335 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI19672.3| unnamed protein product [Vitis vinifera]              209   2e-52
ref|XP_002466604.1| hypothetical protein SORBIDRAFT_01g010860 [S...   209   2e-52
ref|XP_002512711.1| eukaryotic peptide chain release factor subu...   209   2e-52
ref|XP_002297898.1| predicted protein [Populus trichocarpa] gi|2...   209   2e-52
ref|XP_002304621.1| predicted protein [Populus trichocarpa] gi|2...   209   2e-52

>emb|CBI19672.3| unnamed protein product [Vitis vinifera]
          Length = 430

 Score =  209 bits (531), Expect = 2e-52
 Identities = 101/111 (90%), Positives = 104/111 (93%)
 Frame = -2

Query: 334 VLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHIEALK*LLESDEKFGFIVMDG 155
           VLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFH EAL  LLESD+KFGFIVMDG
Sbjct: 124 VLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDG 183

Query: 154 HGTLFGTLSGNTREILHKFTVDLPKKHGRGGQSAARFGRLREESRHNYVRK 2
           +GTLFGTLSGNTRE+LHKFTVDLPKKHGRGGQSA RF RLR E RHNYVRK
Sbjct: 184 NGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK 234


>ref|XP_002466604.1| hypothetical protein SORBIDRAFT_01g010860 [Sorghum bicolor]
           gi|241920458|gb|EER93602.1| hypothetical protein
           SORBIDRAFT_01g010860 [Sorghum bicolor]
          Length = 437

 Score =  209 bits (531), Expect = 2e-52
 Identities = 101/111 (90%), Positives = 104/111 (93%)
 Frame = -2

Query: 334 VLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHIEALK*LLESDEKFGFIVMDG 155
           VLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFH EAL  LLESD+KFGFIVMDG
Sbjct: 93  VLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDG 152

Query: 154 HGTLFGTLSGNTREILHKFTVDLPKKHGRGGQSAARFGRLREESRHNYVRK 2
           +GTLFGTLSGNTRE+LHKFTVDLPKKHGRGGQSA RF RLR E RHNYVRK
Sbjct: 153 NGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK 203


>ref|XP_002512711.1| eukaryotic peptide chain release factor subunit, putative [Ricinus
           communis] gi|223548672|gb|EEF50163.1| eukaryotic peptide
           chain release factor subunit, putative [Ricinus
           communis]
          Length = 436

 Score =  209 bits (531), Expect = 2e-52
 Identities = 101/111 (90%), Positives = 104/111 (93%)
 Frame = -2

Query: 334 VLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHIEALK*LLESDEKFGFIVMDG 155
           VLYTGTIVT+DGKEKKVTIDFEPFRPINASLYLCDNKFH EAL  LLESDEKFGFIVMDG
Sbjct: 93  VLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDEKFGFIVMDG 152

Query: 154 HGTLFGTLSGNTREILHKFTVDLPKKHGRGGQSAARFGRLREESRHNYVRK 2
           +GTLFGTLSGNTRE+LHKFTVDLPKKHGRGGQSA RF RLR E RHNYVRK
Sbjct: 153 NGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK 203


>ref|XP_002297898.1| predicted protein [Populus trichocarpa] gi|222845156|gb|EEE82703.1|
           predicted protein [Populus trichocarpa]
          Length = 436

 Score =  209 bits (531), Expect = 2e-52
 Identities = 101/111 (90%), Positives = 104/111 (93%)
 Frame = -2

Query: 334 VLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHIEALK*LLESDEKFGFIVMDG 155
           VLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFH EAL  LLESD+KFGFIVMDG
Sbjct: 93  VLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDG 152

Query: 154 HGTLFGTLSGNTREILHKFTVDLPKKHGRGGQSAARFGRLREESRHNYVRK 2
           +GTLFGTLSGNTRE+LHKFTVDLPKKHGRGGQSA RF RLR E RHNYVRK
Sbjct: 153 NGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK 203


>ref|XP_002304621.1| predicted protein [Populus trichocarpa] gi|222842053|gb|EEE79600.1|
           predicted protein [Populus trichocarpa]
          Length = 436

 Score =  209 bits (531), Expect = 2e-52
 Identities = 101/111 (90%), Positives = 104/111 (93%)
 Frame = -2

Query: 334 VLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHIEALK*LLESDEKFGFIVMDG 155
           VLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFH EAL  LLESD+KFGFIVMDG
Sbjct: 93  VLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALSELLESDDKFGFIVMDG 152

Query: 154 HGTLFGTLSGNTREILHKFTVDLPKKHGRGGQSAARFGRLREESRHNYVRK 2
           +GTLFGTLSGNTRE+LHKFTVDLPKKHGRGGQSA RF RLR E RHNYVRK
Sbjct: 153 NGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK 203


Top