BLASTX nr result
ID: Coptis21_contig00028508
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00028508
(912 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containi... 202 6e-55
ref|XP_002326829.1| predicted protein [Populus trichocarpa] gi|2... 195 2e-54
ref|XP_002511627.1| pentatricopeptide repeat-containing protein,... 206 5e-51
emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera] 174 1e-46
ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containi... 163 3e-46
>ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Vitis vinifera]
Length = 746
Score = 202 bits (514), Expect(2) = 6e-55
Identities = 102/170 (60%), Positives = 133/170 (78%)
Frame = -1
Query: 804 SAHHPRTSTFHSILAAFVKESCAREAASLVMLMLERKIRQNINLSTDTVVVLFKSGLRES 625
S+H P T+ FHSILAA V++ CA E+ASLV LMLER+IRQNI+LST TV +L+KSGL++
Sbjct: 554 SSHLPTTAIFHSILAALVEKGCAHESASLVKLMLERRIRQNIDLSTHTVRLLYKSGLQDK 613
Query: 624 AFEIVRLLHDNGYFTKMEEVVGFLCRSRKYLEAREMLLICLEKHQNVGVEMYNKVITGLC 445
AF + LL++NGY KMEE+V FLC+SRK LEA++MLL LEK Q+V ++M + VI+GLC
Sbjct: 614 AFMTIGLLYENGYLVKMEELVSFLCQSRKLLEAQKMLLFSLEKRQSVDIDMCSTVISGLC 673
Query: 444 KTKRAAEAFSLYYELIEKGNQPSLNCLGGLKDILETEGRLDEAEFVLKRM 295
K + +EAF+LYYEL+EKG Q L C L+ LE EGRL+EA+FV K+M
Sbjct: 674 KAHKVSEAFALYYELVEKGMQHRLTCQEDLRISLEAEGRLNEAKFVSKKM 723
Score = 38.9 bits (89), Expect(2) = 6e-55
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = -3
Query: 898 LPDVEIYESLIEGFLQKNEPTFALKTLEKMLK 803
+PD E Y +I+G L+K +P A K+LEKMLK
Sbjct: 522 VPDAETYGLMIDGLLKKGDPVLAHKSLEKMLK 553
>ref|XP_002326829.1| predicted protein [Populus trichocarpa] gi|222835144|gb|EEE73579.1|
predicted protein [Populus trichocarpa]
Length = 664
Score = 195 bits (496), Expect(2) = 2e-54
Identities = 98/170 (57%), Positives = 126/170 (74%)
Frame = -1
Query: 804 SAHHPRTSTFHSILAAFVKESCAREAASLVMLMLERKIRQNINLSTDTVVVLFKSGLRES 625
S++ P+TS FHSIL+ +K ARE+AS V+LM++RKIRQNINLST T+ +LF SGLR
Sbjct: 486 SSYLPKTSVFHSILSELLKNDFARESASFVVLMIDRKIRQNINLSTHTMRLLFGSGLRIK 545
Query: 624 AFEIVRLLHDNGYFTKMEEVVGFLCRSRKYLEAREMLLICLEKHQNVGVEMYNKVITGLC 445
AF+IV LL+DNGY MEE++GF+C++ K L+A++ML CLEK NV + + N VI GLC
Sbjct: 546 AFQIVELLYDNGYMVDMEELIGFICQNGKLLDAQKMLSFCLEKGHNVDINVCNVVIEGLC 605
Query: 444 KTKRAAEAFSLYYELIEKGNQPSLNCLGGLKDILETEGRLDEAEFVLKRM 295
K KR EAF LYY L+EK N L+CL GL+ LE GR +EA+FV KRM
Sbjct: 606 KMKRPLEAFGLYYMLVEKSNHQQLSCLEGLRTALEAGGRSEEAKFVSKRM 655
Score = 44.3 bits (103), Expect(2) = 2e-54
Identities = 21/32 (65%), Positives = 23/32 (71%)
Frame = -3
Query: 898 LPDVEIYESLIEGFLQKNEPTFALKTLEKMLK 803
+PD E Y LI GFLQK EP A KTLE+MLK
Sbjct: 454 VPDFETYVLLINGFLQKGEPILAYKTLERMLK 485
>ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223548807|gb|EEF50296.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 1163
Score = 206 bits (525), Expect = 5e-51
Identities = 104/173 (60%), Positives = 128/173 (73%)
Frame = -1
Query: 804 SAHHPRTSTFHSILAAFVKESCAREAASLVMLMLERKIRQNINLSTDTVVVLFKSGLRES 625
S+H P TSTFHSILA + + CA E+A +MLMLE KIRQNINLST TV +LF SGLR+
Sbjct: 545 SSHVPETSTFHSILARLLAKGCAHESARFIMLMLEGKIRQNINLSTHTVRLLFGSGLRDK 604
Query: 624 AFEIVRLLHDNGYFTKMEEVVGFLCRSRKYLEAREMLLICLEKHQNVGVEMYNKVITGLC 445
AF+IV LL+ NGY MEE++GFL +RK+L A ++LL CLEKHQNV ++M + VI GLC
Sbjct: 605 AFKIVGLLYANGYVVDMEELIGFLSHNRKFLLAHKLLLFCLEKHQNVDIDMCDTVIEGLC 664
Query: 444 KTKRAAEAFSLYYELIEKGNQPSLNCLGGLKDILETEGRLDEAEFVLKRMNQK 286
K KR +EAF LYYEL+EKGN L CL L+ LE GRL+E +F+ KRM K
Sbjct: 665 KMKRHSEAFGLYYELVEKGNNQPLRCLENLRVALEARGRLEEVKFLSKRMPNK 717
>emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]
Length = 1024
Score = 174 bits (442), Expect(2) = 1e-46
Identities = 92/170 (54%), Positives = 122/170 (71%)
Frame = -1
Query: 804 SAHHPRTSTFHSILAAFVKESCAREAASLVMLMLERKIRQNINLSTDTVVVLFKSGLRES 625
S+H P T+ FHSILAA V++ ER+IRQNI+LST TV +L+KSGL++
Sbjct: 625 SSHLPTTAIFHSILAALVEK--------------ERRIRQNIDLSTHTVRLLYKSGLQDK 670
Query: 624 AFEIVRLLHDNGYFTKMEEVVGFLCRSRKYLEAREMLLICLEKHQNVGVEMYNKVITGLC 445
AF + LL++NGY KMEE+V FLC+SRK LEA++MLL LEK Q+V ++M + VI+GLC
Sbjct: 671 AFMTIGLLYENGYLVKMEELVSFLCQSRKLLEAQKMLLFSLEKRQSVDIDMCSTVISGLC 730
Query: 444 KTKRAAEAFSLYYELIEKGNQPSLNCLGGLKDILETEGRLDEAEFVLKRM 295
K + +EAF+LYYEL+EKG Q L C L+ LE EGRL+EA+FV K+M
Sbjct: 731 KAHKVSEAFALYYELVEKGMQHRLTCQEDLRISLEAEGRLNEAKFVSKKM 780
Score = 38.9 bits (89), Expect(2) = 1e-46
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = -3
Query: 898 LPDVEIYESLIEGFLQKNEPTFALKTLEKMLK 803
+PD E Y +I+G L+K +P A K+LEKMLK
Sbjct: 593 VPDAETYGLMIDGLLKKGDPVLAHKSLEKMLK 624
>ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Glycine max]
Length = 729
Score = 163 bits (412), Expect(2) = 3e-46
Identities = 79/170 (46%), Positives = 116/170 (68%)
Frame = -1
Query: 804 SAHHPRTSTFHSILAAFVKESCAREAASLVMLMLERKIRQNINLSTDTVVVLFKSGLRES 625
S++ P+TST+HS+LA +++ CA E++ ++++MLE+ +RQNINLST+++ +LF E
Sbjct: 537 SSYQPKTSTWHSVLAKLLEKGCAHESSCVIVMMLEKNVRQNINLSTESLQLLFGREQHER 596
Query: 624 AFEIVRLLHDNGYFTKMEEVVGFLCRSRKYLEAREMLLICLEKHQNVGVEMYNKVITGLC 445
AFEI+ LL+ NGY+ K+EEV FL + K EA ++LL LE HQNV +++ N I LC
Sbjct: 597 AFEIINLLYKNGYYVKIEEVAQFLLKRGKLSEACKLLLFSLENHQNVDIDLCNATILNLC 656
Query: 444 KTKRAAEAFSLYYELIEKGNQPSLNCLGGLKDILETEGRLDEAEFVLKRM 295
K + +EAFSL YEL+E G L CL L LE G+ +EA F+ KR+
Sbjct: 657 KINKVSEAFSLCYELVENGLHQELTCLDDLIAALEEGGKREEAAFISKRL 706
Score = 49.3 bits (116), Expect(2) = 3e-46
Identities = 22/32 (68%), Positives = 28/32 (87%)
Frame = -3
Query: 898 LPDVEIYESLIEGFLQKNEPTFALKTLEKMLK 803
LPD+EIY+ LI+GFLQK++P A +TLEKMLK
Sbjct: 505 LPDIEIYDYLIDGFLQKDKPLLAKETLEKMLK 536