BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00028442
         (745 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI29222.3| unnamed protein product [Vitis vinifera]              175   1e-41
ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   171   1e-40
ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containi...   171   1e-40
ref|XP_002303480.1| predicted protein [Populus trichocarpa] gi|2...   171   1e-40
ref|XP_002519901.1| pentatricopeptide repeat-containing protein,...   169   6e-40

>emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  175 bits (443), Expect = 1e-41
 Identities = 82/141 (58%), Positives = 99/141 (70%)
 Frame = +3

Query: 3    GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
            GMC IGR E+A  L+  MR+EGL+PNVVCYT+++GG+CKLG M++   +LQEM    + P
Sbjct: 675  GMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHP 734

Query: 183  NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLC 362
            NK TYT+MIDGY K G +             GI PD VTYN LT GFCKEGK+E+ FK+C
Sbjct: 735  NKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKIC 794

Query: 363  DQMSQRGLVFDEITYTTLVDG 425
            D MSQ GL  DEITYTTLV G
Sbjct: 795  DYMSQEGLPLDEITYTTLVHG 815



 Score =  100 bits (248), Expect = 4e-19
 Identities = 50/146 (34%), Positives = 75/146 (51%)
 Frame = +3

Query: 3    GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
            GMC IG+ +EA NL    +   LVPNV  Y  ++ G+CK   +EE  ++  E++ Q +  
Sbjct: 570  GMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLEL 629

Query: 183  NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLC 362
            N   Y  +I  YC+ G+              GI P   TY++L +G C  G+ME A  L 
Sbjct: 630  NSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLI 689

Query: 363  DQMSQRGLVFDEITYTTLVDGLTSSG 440
            D+M + GL+ + + YT L+ G    G
Sbjct: 690  DEMRKEGLLPNVVCYTALIGGYCKLG 715



 Score = 97.1 bits (240), Expect = 4e-18
 Identities = 51/175 (29%), Positives = 87/175 (49%)
 Frame = +3

Query: 3    GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
            G+C  G  +EA  LL  M   G V + + Y +++ G CK G +EE  ++  EM++Q + P
Sbjct: 500  GLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEP 559

Query: 183  NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLC 362
            + FTY ++I G C++G +              + P+V TY  +  G+CK  K+E+  KL 
Sbjct: 560  DTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLF 619

Query: 363  DQMSQRGLVFDEITYTTLVDGLTSSGFAREATLLSECIVKSGMVTPRVKAVDSLV 527
             ++  + L  + + Y TL+     +G   EA  L + +   G + P      SL+
Sbjct: 620  TELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKG-IPPTTATYSSLI 673



 Score = 96.7 bits (239), Expect = 5e-18
 Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 1/162 (0%)
 Frame = +3

Query: 3   GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
           G+C  G  +EA      M ++G+   ++ Y+ ++ G  KL    EA  +L+E +E+   P
Sbjct: 290 GLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTP 349

Query: 183 NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLC 362
           N+  Y  +IDGYCKMG++             GI P+ VT N++  GFCK G+ME+A  + 
Sbjct: 350 NEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECIL 409

Query: 363 DQMSQRGLVFDEITYTTLVDGL-TSSGFAREATLLSECIVKS 485
           ++M  RG   +   +TT++  L  +S F      L E ++++
Sbjct: 410 EEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRN 451



 Score = 95.5 bits (236), Expect = 1e-17
 Identities = 49/141 (34%), Positives = 76/141 (53%)
 Frame = +3

Query: 3   GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
           G+C  G+  +A  L   +  +G   N+V   +++ G CK G M+EA R+L++M+E+    
Sbjct: 465 GLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVL 524

Query: 183 NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLC 362
           +K TY  +I G CK G V             GI PD  TYN L +G C+ GK+++A  L 
Sbjct: 525 DKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLW 584

Query: 363 DQMSQRGLVFDEITYTTLVDG 425
           ++   R LV +  TY  ++DG
Sbjct: 585 NECKSRDLVPNVYTYGVMIDG 605



 Score = 90.5 bits (223), Expect = 3e-16
 Identities = 58/176 (32%), Positives = 83/176 (47%), Gaps = 1/176 (0%)
 Frame = +3

Query: 6   MCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAPN 185
           +C   R E A   L  M    + PN    T++VGG CK G   +A  +   ++E+    N
Sbjct: 431 LCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGAN 490

Query: 186 KFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLCD 365
             T   +I G CK G++             G   D +TYN L  G CKEGK+E+ FKL  
Sbjct: 491 LVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRG 550

Query: 366 QMSQRGLVFDEITYTTLVDGLTSSGFAREA-TLLSECIVKSGMVTPRVKAVDSLVD 530
           +M ++G+  D  TY  L+ G+   G   EA  L +EC  KS  + P V     ++D
Sbjct: 551 EMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNEC--KSRDLVPNVYTYGVMID 604



 Score = 78.6 bits (192), Expect = 1e-12
 Identities = 42/162 (25%), Positives = 78/162 (48%)
 Frame = +3

Query: 3   GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
           G+  + +  EAN++L     +G  PN V Y +++ G+CK+G + +A RI  +M+ + + P
Sbjct: 325 GLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINP 384

Query: 183 NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLC 362
           N  T   +I G+CK+G +             G + +   +  + +  C   + E A +  
Sbjct: 385 NSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFL 444

Query: 363 DQMSQRGLVFDEITYTTLVDGLTSSGFAREATLLSECIVKSG 488
            +M  R +  ++   TTLV GL   G   +A  L   +++ G
Sbjct: 445 REMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKG 486



 Score = 78.2 bits (191), Expect = 2e-12
 Identities = 49/168 (29%), Positives = 87/168 (51%), Gaps = 4/168 (2%)
 Frame = +3

Query: 39  NLLGTMR---REGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAPNKFTYTIMI 209
           N +G  R    +G+ P V   T ++    K   +E++  + + M  Q V+P+ + ++  I
Sbjct: 195 NAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETM-RQGVSPDVYLFSTAI 253

Query: 210 DGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLCDQMSQRGLV 389
           + +CK G V             G++P+VVTYN L +G CK G +++AF+  ++M + G+ 
Sbjct: 254 NAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVN 313

Query: 390 FDEITYTTLVDGLTSSGFAREA-TLLSECIVKSGMVTPRVKAVDSLVD 530
              ITY+ L++GL       EA ++L E + K    TP     ++L+D
Sbjct: 314 ATLITYSVLINGLMKLEKFNEANSVLKETLEKG--FTPNEVVYNTLID 359



 Score = 77.8 bits (190), Expect = 2e-12
 Identities = 42/156 (26%), Positives = 79/156 (50%)
 Frame = +3

Query: 60  REGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAPNKFTYTIMIDGYCKMGHVX 239
           R+G+ P+V  +++ +  FCK G +E+A ++  +M +  V+PN  TY  +I G CK G++ 
Sbjct: 239 RQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLD 298

Query: 240 XXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLCDQMSQRGLVFDEITYTTLV 419
                       G+   ++TY+ L  G  K  K  +A  +  +  ++G   +E+ Y TL+
Sbjct: 299 EAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLI 358

Query: 420 DGLTSSGFAREATLLSECIVKSGMVTPRVKAVDSLV 527
           DG    G   +A  +   +V  G + P    ++S++
Sbjct: 359 DGYCKMGNLGDALRIRGDMVSKG-INPNSVTLNSII 393


>ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g19440, chloroplastic-like [Cucumis sativus]
          Length = 799

 Score =  171 bits (433), Expect = 1e-40
 Identities = 80/141 (56%), Positives = 98/141 (69%)
 Frame = +3

Query: 3    GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
            G+C IG  E+A +L+  MR+EG VPNVVCYT+++GG+CKLG M+ A     EMI   + P
Sbjct: 649  GVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHP 708

Query: 183  NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLC 362
            NKFTYT+MIDGYCK+G++             GI PDVVTYN LT GFCK   M+ AFK+C
Sbjct: 709  NKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVC 768

Query: 363  DQMSQRGLVFDEITYTTLVDG 425
            DQM+  GL  DEITYTTLV G
Sbjct: 769  DQMATEGLPVDEITYTTLVHG 789



 Score = 89.7 bits (221), Expect = 6e-16
 Identities = 42/146 (28%), Positives = 74/146 (50%)
 Frame = +3

Query: 3   GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
           G+C +G+ ++A  L    +  GL+ N+  Y  ++ G+CK   +E+   +  E++ + +  
Sbjct: 544 GLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMEL 603

Query: 183 NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLC 362
           N   Y I+I  +C+ G+V             GI P+  TY++L +G C  G +E A  L 
Sbjct: 604 NSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLI 663

Query: 363 DQMSQRGLVFDEITYTTLVDGLTSSG 440
           D+M + G V + + YT L+ G    G
Sbjct: 664 DEMRKEGFVPNVVCYTALIGGYCKLG 689



 Score = 87.8 bits (216), Expect = 2e-15
 Identities = 46/141 (32%), Positives = 73/141 (51%)
 Frame = +3

Query: 3   GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
           G+C  G+  EA  L   +  +G   + V   +++ G C  G + EA RI++EM+E+ +  
Sbjct: 439 GLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPM 498

Query: 183 NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLC 362
           ++ TY  +I G+C  G V             GI PD+ TYN L  G C  GK++ A KL 
Sbjct: 499 DRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLW 558

Query: 363 DQMSQRGLVFDEITYTTLVDG 425
           D+    GL+ +  TY  +++G
Sbjct: 559 DEFKASGLISNIHTYGIMMEG 579



 Score = 85.9 bits (211), Expect = 8e-15
 Identities = 50/162 (30%), Positives = 77/162 (47%)
 Frame = +3

Query: 6   MCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAPN 185
           +C  G+ E A  L   M + G+ PNVV Y  I+ G C+ G ++ A  + ++M  + V PN
Sbjct: 230 LCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPN 289

Query: 186 KFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLCD 365
             TY  +I+G  K+                G  P+VV +N L  G+CK G +E A K+ D
Sbjct: 290 LKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKD 349

Query: 366 QMSQRGLVFDEITYTTLVDGLTSSGFAREATLLSECIVKSGM 491
            M  + +    +T  +L+ G   S     A    E I+ SG+
Sbjct: 350 VMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGL 391



 Score = 82.4 bits (202), Expect = 9e-14
 Identities = 43/175 (24%), Positives = 84/175 (48%)
 Frame = +3

Query: 3   GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
           G+CG G+  EA+ ++  M   GL  + + Y +++ GFC  G +E   R+ +EM ++ + P
Sbjct: 474 GLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQP 533

Query: 183 NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLC 362
           + +TY  ++ G C +G +             G+  ++ TY  +  G+CK  ++E    L 
Sbjct: 534 DIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLF 593

Query: 363 DQMSQRGLVFDEITYTTLVDGLTSSGFAREATLLSECIVKSGMVTPRVKAVDSLV 527
           +++  + +  + I Y  ++     +G    A  L E  +KS  + P      SL+
Sbjct: 594 NELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLE-NMKSKGILPNCATYSSLI 647



 Score = 81.3 bits (199), Expect = 2e-13
 Identities = 48/164 (29%), Positives = 78/164 (47%)
 Frame = +3

Query: 3    GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
            G C   R E+  NL   +  + +  N + Y  I+   C+ G +  A ++L+ M  + + P
Sbjct: 579  GYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILP 638

Query: 183  NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLC 362
            N  TY+ +I G C +G V             G  P+VV Y AL  G+CK G+M+ A    
Sbjct: 639  NCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTW 698

Query: 363  DQMSQRGLVFDEITYTTLVDGLTSSGFAREATLLSECIVKSGMV 494
             +M    +  ++ TYT ++DG    G   +A  L   + +SG+V
Sbjct: 699  LEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIV 742



 Score = 79.0 bits (193), Expect = 1e-12
 Identities = 42/128 (32%), Positives = 62/128 (48%)
 Frame = +3

Query: 3   GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
           G+C  GR + A  L   M  +G+ PN+  Y +++ G  KL   ++   IL EMI     P
Sbjct: 264 GLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNP 323

Query: 183 NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLC 362
           N   +  +IDGYCKMG++              I P  VT  +L  GFCK  ++E A    
Sbjct: 324 NVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENAL 383

Query: 363 DQMSQRGL 386
           +++   GL
Sbjct: 384 EEILSSGL 391



 Score = 79.0 bits (193), Expect = 1e-12
 Identities = 50/164 (30%), Positives = 77/164 (46%)
 Frame = +3

Query: 6   MCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAPN 185
           +C   R   A      M      P+ +  T +V G CK G   EA  +   ++E+    +
Sbjct: 405 LCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPAS 464

Query: 186 KFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLCD 365
           K T   +I G C  G +             G+  D +TYNAL  GFC EGK+E  F+L +
Sbjct: 465 KVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLRE 524

Query: 366 QMSQRGLVFDEITYTTLVDGLTSSGFAREATLLSECIVKSGMVT 497
           +M++RG+  D  TY  L+ GL + G   +A  L +    SG+++
Sbjct: 525 EMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLIS 568



 Score = 73.6 bits (179), Expect = 4e-11
 Identities = 42/155 (27%), Positives = 73/155 (47%)
 Frame = +3

Query: 63  EGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAPNKFTYTIMIDGYCKMGHVXX 242
           EG  P+V  +T+++   CK G ME A  +  +M +  ++PN  TY  +I+G C+ G +  
Sbjct: 214 EGACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDN 273

Query: 243 XXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLCDQMSQRGLVFDEITYTTLVD 422
                      G+ P++ TY AL  G  K    +K   + D+M   G   + + +  L+D
Sbjct: 274 AFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLID 333

Query: 423 GLTSSGFAREATLLSECIVKSGMVTPRVKAVDSLV 527
           G    G    A  + + ++ S  +TP    + SL+
Sbjct: 334 GYCKMGNIEGALKIKDVMI-SKNITPTSVTLYSLM 367



 Score = 70.5 bits (171), Expect = 4e-10
 Identities = 41/159 (25%), Positives = 80/159 (50%)
 Frame = +3

Query: 54  MRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAPNKFTYTIMIDGYCKMGH 233
           + R+G  P++      +    K    E+   + + M E    P+ F++T +I+  CK G 
Sbjct: 177 LARKGTFPSLKTCNFXLSSLVKANEFEKCCEVFRVMSEGA-CPDVFSFTNVINALCKGGK 235

Query: 234 VXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLCDQMSQRGLVFDEITYTT 413
           +             GI+P+VVTYN +  G C+ G+++ AF+L ++M+ +G+  +  TY  
Sbjct: 236 MENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGA 295

Query: 414 LVDGLTSSGFAREATLLSECIVKSGMVTPRVKAVDSLVD 530
           L++GL    F  +   + + ++ +G   P V   ++L+D
Sbjct: 296 LINGLIKLNFFDKVNHILDEMIGAGF-NPNVVVFNNLID 333



 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 43/203 (21%), Positives = 85/203 (41%), Gaps = 35/203 (17%)
 Frame = +3

Query: 3   GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
           G+  +   ++ N++L  M   G  PNVV + +++ G+CK+G +E A +I   MI + + P
Sbjct: 299 GLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITP 358

Query: 183 NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIA-------------------------- 284
              T   ++ G+CK   +             G++                          
Sbjct: 359 TSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFT 418

Query: 285 ---------PDVVTYNALTYGFCKEGKMEKAFKLCDQMSQRGLVFDEITYTTLVDGLTSS 437
                    P  +    L  G CK+GK  +A +L  ++ ++G    ++T   L+ GL  +
Sbjct: 419 KMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGA 478

Query: 438 GFAREATLLSECIVKSGMVTPRV 506
           G   EA+ + + +++ G+   R+
Sbjct: 479 GKLPEASRIVKEMLERGLPMDRI 501


>ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
            chloroplastic-like [Cucumis sativus]
          Length = 822

 Score =  171 bits (433), Expect = 1e-40
 Identities = 80/141 (56%), Positives = 98/141 (69%)
 Frame = +3

Query: 3    GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
            G+C IG  E+A +L+  MR+EG VPNVVCYT+++GG+CKLG M+ A     EMI   + P
Sbjct: 672  GVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHP 731

Query: 183  NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLC 362
            NKFTYT+MIDGYCK+G++             GI PDVVTYN LT GFCK   M+ AFK+C
Sbjct: 732  NKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVC 791

Query: 363  DQMSQRGLVFDEITYTTLVDG 425
            DQM+  GL  DEITYTTLV G
Sbjct: 792  DQMATEGLPVDEITYTTLVHG 812



 Score = 89.7 bits (221), Expect = 6e-16
 Identities = 42/146 (28%), Positives = 74/146 (50%)
 Frame = +3

Query: 3    GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
            G+C +G+ ++A  L    +  GL+ N+  Y  ++ G+CK   +E+   +  E++ + +  
Sbjct: 567  GLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMEL 626

Query: 183  NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLC 362
            N   Y I+I  +C+ G+V             GI P+  TY++L +G C  G +E A  L 
Sbjct: 627  NSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLI 686

Query: 363  DQMSQRGLVFDEITYTTLVDGLTSSG 440
            D+M + G V + + YT L+ G    G
Sbjct: 687  DEMRKEGFVPNVVCYTALIGGYCKLG 712



 Score = 87.8 bits (216), Expect = 2e-15
 Identities = 46/141 (32%), Positives = 73/141 (51%)
 Frame = +3

Query: 3   GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
           G+C  G+  EA  L   +  +G   + V   +++ G C  G + EA RI++EM+E+ +  
Sbjct: 462 GLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPM 521

Query: 183 NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLC 362
           ++ TY  +I G+C  G V             GI PD+ TYN L  G C  GK++ A KL 
Sbjct: 522 DRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLW 581

Query: 363 DQMSQRGLVFDEITYTTLVDG 425
           D+    GL+ +  TY  +++G
Sbjct: 582 DEFKASGLISNIHTYGIMMEG 602



 Score = 85.9 bits (211), Expect = 8e-15
 Identities = 50/162 (30%), Positives = 77/162 (47%)
 Frame = +3

Query: 6   MCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAPN 185
           +C  G+ E A  L   M + G+ PNVV Y  I+ G C+ G ++ A  + ++M  + V PN
Sbjct: 253 LCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPN 312

Query: 186 KFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLCD 365
             TY  +I+G  K+                G  P+VV +N L  G+CK G +E A K+ D
Sbjct: 313 LKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKD 372

Query: 366 QMSQRGLVFDEITYTTLVDGLTSSGFAREATLLSECIVKSGM 491
            M  + +    +T  +L+ G   S     A    E I+ SG+
Sbjct: 373 VMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGL 414



 Score = 82.4 bits (202), Expect = 9e-14
 Identities = 43/175 (24%), Positives = 84/175 (48%)
 Frame = +3

Query: 3    GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
            G+CG G+  EA+ ++  M   GL  + + Y +++ GFC  G +E   R+ +EM ++ + P
Sbjct: 497  GLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQP 556

Query: 183  NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLC 362
            + +TY  ++ G C +G +             G+  ++ TY  +  G+CK  ++E    L 
Sbjct: 557  DIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLF 616

Query: 363  DQMSQRGLVFDEITYTTLVDGLTSSGFAREATLLSECIVKSGMVTPRVKAVDSLV 527
            +++  + +  + I Y  ++     +G    A  L E  +KS  + P      SL+
Sbjct: 617  NELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLE-NMKSKGILPNCATYSSLI 670



 Score = 81.3 bits (199), Expect = 2e-13
 Identities = 48/164 (29%), Positives = 78/164 (47%)
 Frame = +3

Query: 3    GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
            G C   R E+  NL   +  + +  N + Y  I+   C+ G +  A ++L+ M  + + P
Sbjct: 602  GYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILP 661

Query: 183  NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLC 362
            N  TY+ +I G C +G V             G  P+VV Y AL  G+CK G+M+ A    
Sbjct: 662  NCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTW 721

Query: 363  DQMSQRGLVFDEITYTTLVDGLTSSGFAREATLLSECIVKSGMV 494
             +M    +  ++ TYT ++DG    G   +A  L   + +SG+V
Sbjct: 722  LEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIV 765



 Score = 79.0 bits (193), Expect = 1e-12
 Identities = 41/128 (32%), Positives = 62/128 (48%)
 Frame = +3

Query: 3   GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
           G+C  GR + A  L   M  +G+ PN+  Y +++ G  KL   ++   +L EMI     P
Sbjct: 287 GLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNP 346

Query: 183 NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLC 362
           N   +  +IDGYCKMG++              I P  VT  +L  GFCK  ++E A    
Sbjct: 347 NVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENAL 406

Query: 363 DQMSQRGL 386
           +++   GL
Sbjct: 407 EEILSSGL 414



 Score = 79.0 bits (193), Expect = 1e-12
 Identities = 50/164 (30%), Positives = 77/164 (46%)
 Frame = +3

Query: 6   MCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAPN 185
           +C   R   A      M      P+ +  T +V G CK G   EA  +   ++E+    +
Sbjct: 428 LCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPAS 487

Query: 186 KFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLCD 365
           K T   +I G C  G +             G+  D +TYNAL  GFC EGK+E  F+L +
Sbjct: 488 KVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLRE 547

Query: 366 QMSQRGLVFDEITYTTLVDGLTSSGFAREATLLSECIVKSGMVT 497
           +M++RG+  D  TY  L+ GL + G   +A  L +    SG+++
Sbjct: 548 EMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLIS 591



 Score = 73.2 bits (178), Expect = 5e-11
 Identities = 42/155 (27%), Positives = 73/155 (47%)
 Frame = +3

Query: 63  EGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAPNKFTYTIMIDGYCKMGHVXX 242
           EG  P+V  +T+++   CK G ME A  +  +M +  ++PN  TY  +I+G C+ G +  
Sbjct: 237 EGACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDN 296

Query: 243 XXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLCDQMSQRGLVFDEITYTTLVD 422
                      G+ P++ TY AL  G  K    +K   + D+M   G   + + +  L+D
Sbjct: 297 AFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLID 356

Query: 423 GLTSSGFAREATLLSECIVKSGMVTPRVKAVDSLV 527
           G    G    A  + + ++ S  +TP    + SL+
Sbjct: 357 GYCKMGNIEGALKIKDVMI-SKNITPTSVTLYSLM 390



 Score = 72.4 bits (176), Expect = 9e-11
 Identities = 42/159 (26%), Positives = 81/159 (50%)
 Frame = +3

Query: 54  MRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAPNKFTYTIMIDGYCKMGH 233
           + R+G  P++     ++    K    E+   + + M E    P+ F++T +I+  CK G 
Sbjct: 200 LARKGTFPSLKTCNFLLSSLVKANEFEKCCEVFRVMSEGA-CPDVFSFTNVINALCKGGK 258

Query: 234 VXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLCDQMSQRGLVFDEITYTT 413
           +             GI+P+VVTYN +  G C+ G+++ AF+L ++M+ +G+  +  TY  
Sbjct: 259 MENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGA 318

Query: 414 LVDGLTSSGFAREATLLSECIVKSGMVTPRVKAVDSLVD 530
           L++GL    F  +   + + ++ SG   P V   ++L+D
Sbjct: 319 LINGLIKLNFFDKVNHVLDEMIGSGF-NPNVVVFNNLID 356



 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 43/203 (21%), Positives = 85/203 (41%), Gaps = 35/203 (17%)
 Frame = +3

Query: 3   GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
           G+  +   ++ N++L  M   G  PNVV + +++ G+CK+G +E A +I   MI + + P
Sbjct: 322 GLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITP 381

Query: 183 NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIA-------------------------- 284
              T   ++ G+CK   +             G++                          
Sbjct: 382 TSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFT 441

Query: 285 ---------PDVVTYNALTYGFCKEGKMEKAFKLCDQMSQRGLVFDEITYTTLVDGLTSS 437
                    P  +    L  G CK+GK  +A +L  ++ ++G    ++T   L+ GL  +
Sbjct: 442 KMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGA 501

Query: 438 GFAREATLLSECIVKSGMVTPRV 506
           G   EA+ + + +++ G+   R+
Sbjct: 502 GKLPEASRIVKEMLERGLPMDRI 524


>ref|XP_002303480.1| predicted protein [Populus trichocarpa] gi|222840912|gb|EEE78459.1|
            predicted protein [Populus trichocarpa]
          Length = 836

 Score =  171 bits (433), Expect = 1e-40
 Identities = 79/141 (56%), Positives = 99/141 (70%)
 Frame = +3

Query: 3    GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
            G+C IG  ++A +LL  MR+EGL+PNVVCYT+I+GG+ KLG M +   +LQEM    + P
Sbjct: 685  GLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHP 744

Query: 183  NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLC 362
            NKFTYTIMIDG+CK+G               GI PD VTYNA T G CKEGK+E+AFK+C
Sbjct: 745  NKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVC 804

Query: 363  DQMSQRGLVFDEITYTTLVDG 425
            D+MS   +  DEITYTTL+DG
Sbjct: 805  DEMSSGAVCLDEITYTTLIDG 825



 Score = 98.6 bits (244), Expect = 1e-18
 Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 1/161 (0%)
 Frame = +3

Query: 3   GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
           G+C  G+  EA  L   +  +G VPN+V   +++ G CK G M+E  ++L++M+E+ +  
Sbjct: 475 GLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVF 534

Query: 183 NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLC 362
           ++ TY  +I G CK G V             GI PD+ T+N L +G C   K+++A +L 
Sbjct: 535 DRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLW 594

Query: 363 DQMSQRGLVFDEITYTTLVDGLTSSGFAREA-TLLSECIVK 482
            +  + G V +  TY  ++DG   +    E   LL+E + K
Sbjct: 595 HECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSK 635



 Score = 98.2 bits (243), Expect = 2e-18
 Identities = 49/161 (30%), Positives = 85/161 (52%)
 Frame = +3

Query: 9   CGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAPNK 188
           C   R ++A  L   M + G+ PNVV Y +I+ G CK G ++EA R  ++M+++ V+P+ 
Sbjct: 267 CKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSL 326

Query: 189 FTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLCDQ 368
            TY++ I+G  K+  +             G  P+ V YN L  G+CK G + +A K+ D 
Sbjct: 327 ITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDD 386

Query: 369 MSQRGLVFDEITYTTLVDGLTSSGFAREATLLSECIVKSGM 491
           M  +G+  + +T  +L+ G   S    +A  + E ++  G+
Sbjct: 387 MLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGL 427



 Score = 96.7 bits (239), Expect = 5e-18
 Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 7/178 (3%)
 Frame = +3

Query: 3   GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
           G+C  GR +EA      M +E + P+++ Y+  + G  KL  ++EA  +L+EM E    P
Sbjct: 300 GLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVP 359

Query: 183 NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLC 362
           N+  Y  +IDGYCKMG++             GI+P+ VT N+L  GFCK  ++ +A  + 
Sbjct: 360 NEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVL 419

Query: 363 DQMSQRGLVFDEITYTTLVDGL-------TSSGFAREATLLSECIVKSGMVTPRVKAV 515
           ++M  RGL  ++ +++ +++ L       T+  F RE  LL       G++T  V  +
Sbjct: 420 EEMIGRGLPINQGSFSMVINWLCLKFRFVTALHFIRE-MLLRNLRPNDGLLTTLVSGL 476



 Score = 96.7 bits (239), Expect = 5e-18
 Identities = 48/149 (32%), Positives = 80/149 (53%)
 Frame = +3

Query: 9    CGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAPNK 188
            C  G    A  L   M+  G++ +   Y+S++ G C +GL+++A+ +L EM ++ + PN 
Sbjct: 652  CINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNV 711

Query: 189  FTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLCDQ 368
              YT +I GY K+G +              I P+  TY  +  GFCK GK ++A KL ++
Sbjct: 712  VCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNE 771

Query: 369  MSQRGLVFDEITYTTLVDGLTSSGFAREA 455
            M+++G++ D +TY    +GL   G   EA
Sbjct: 772  MTEKGILPDAVTYNAFTNGLCKEGKVEEA 800



 Score = 89.0 bits (219), Expect = 1e-15
 Identities = 42/146 (28%), Positives = 74/146 (50%)
 Frame = +3

Query: 3    GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
            G+C   + +EA+ L    ++ G VPNV  Y  ++ G+CK   +EE   +L E++ + +  
Sbjct: 580  GLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLEL 639

Query: 183  NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLC 362
            N   Y  +I  YC  G++             G+     TY++L +G C  G ++ A  L 
Sbjct: 640  NSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLL 699

Query: 363  DQMSQRGLVFDEITYTTLVDGLTSSG 440
            D+M + GL+ + + YTT++ G +  G
Sbjct: 700  DEMRKEGLLPNVVCYTTIIGGYSKLG 725



 Score = 84.0 bits (206), Expect = 3e-14
 Identities = 51/210 (24%), Positives = 93/210 (44%), Gaps = 35/210 (16%)
 Frame = +3

Query: 3    GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
            G+C  G  +E   LL  M   GLV + + Y +++ G CK G ++E   + +EM+++ + P
Sbjct: 510  GLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQP 569

Query: 183  NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEK----- 347
            + +T+ +++ G C    +             G  P+V TY  +  G+CK  K+E+     
Sbjct: 570  DIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLL 629

Query: 348  ------------------------------AFKLCDQMSQRGLVFDEITYTTLVDGLTSS 437
                                          AF+L D M  RG++    TY++L+ GL + 
Sbjct: 630  NELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNI 689

Query: 438  GFAREATLLSECIVKSGMVTPRVKAVDSLV 527
            G   +A  L + + K G++ P V    +++
Sbjct: 690  GLVDDAKHLLDEMRKEGLL-PNVVCYTTII 718



 Score = 81.3 bits (199), Expect = 2e-13
 Identities = 48/168 (28%), Positives = 79/168 (47%)
 Frame = +3

Query: 3    GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
            G C   + EE  NLL  +  + L  N V Y S++  +C  G M  A R+  +M  + V  
Sbjct: 615  GYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLL 674

Query: 183  NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLC 362
            +  TY+ ++ G C +G V             G+ P+VV Y  +  G+ K G+M K   + 
Sbjct: 675  SCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVL 734

Query: 363  DQMSQRGLVFDEITYTTLVDGLTSSGFAREATLLSECIVKSGMVTPRV 506
             +MS   +  ++ TYT ++DG    G  +EA  L   + + G++   V
Sbjct: 735  QEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAV 782



 Score = 80.5 bits (197), Expect = 3e-13
 Identities = 53/175 (30%), Positives = 84/175 (48%)
 Frame = +3

Query: 6   MCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAPN 185
           +C   R   A + +  M    L PN    T++V G CK G   EA  +   ++ +   PN
Sbjct: 441 LCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPN 500

Query: 186 KFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLCD 365
             T   +I G CK G++             G+  D +TYN L  G CKEGK+++ F+L +
Sbjct: 501 IVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKE 560

Query: 366 QMSQRGLVFDEITYTTLVDGLTSSGFAREATLLSECIVKSGMVTPRVKAVDSLVD 530
           +M ++G+  D  T+  L+ GL ++    EA+ L     K+G V P V     ++D
Sbjct: 561 EMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYV-PNVYTYGVMID 614



 Score = 80.1 bits (196), Expect = 4e-13
 Identities = 43/154 (27%), Positives = 81/154 (52%)
 Frame = +3

Query: 66  GLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAPNKFTYTIMIDGYCKMGHVXXX 245
           G++P+V  +++++  FCK    ++A  +  +M +  VAPN  TY  +I G CK G +   
Sbjct: 251 GIIPDVHLFSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEA 310

Query: 246 XXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLCDQMSQRGLVFDEITYTTLVDG 425
                      ++P ++TY+    G  K  K+++A  +  +MS+ G V +E+ Y TL+DG
Sbjct: 311 YRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDG 370

Query: 426 LTSSGFAREATLLSECIVKSGMVTPRVKAVDSLV 527
               G   EA  + + ++  G ++P    ++SL+
Sbjct: 371 YCKMGNISEALKIRDDMLSKG-ISPNSVTLNSLI 403



 Score = 78.6 bits (192), Expect = 1e-12
 Identities = 58/233 (24%), Positives = 86/233 (36%), Gaps = 70/233 (30%)
 Frame = +3

Query: 3    GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
            G+  + + +EAN +L  M   G VPN V Y +++ G+CK+G + EA +I  +M+ + ++P
Sbjct: 335  GLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISP 394

Query: 183  NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXG---------------------------- 278
            N  T   +I G+CK   +             G                            
Sbjct: 395  NSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTALHFI 454

Query: 279  -------IAPDVVTYNALTYGFCKEGKMEKA----------------------------- 350
                   + P+      L  G CK GK  +A                             
Sbjct: 455  REMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKA 514

Query: 351  ------FKLCDQMSQRGLVFDEITYTTLVDGLTSSGFAREATLLSECIVKSGM 491
                   KL   M +RGLVFD ITY TL+ G    G  +E   L E +VK G+
Sbjct: 515  GNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGI 567


>ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223540947|gb|EEF42505.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 777

 Score =  169 bits (428), Expect = 6e-40
 Identities = 81/141 (57%), Positives = 99/141 (70%)
 Frame = +3

Query: 3    GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
            G+  IG  + AN LL  MR+EGL PNVVCYT+++GG+CKLG M +   ILQEM    V P
Sbjct: 626  GLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHP 685

Query: 183  NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLC 362
            NK TYTIMI+G+CK+G++             GI PD VTYNALT GFCKEGKME+A K+C
Sbjct: 686  NKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVC 745

Query: 363  DQMSQRGLVFDEITYTTLVDG 425
            D MS  G+  D+ITYTTL+DG
Sbjct: 746  DLMSTGGISLDDITYTTLIDG 766



 Score = 99.0 bits (245), Expect = 9e-19
 Identities = 56/173 (32%), Positives = 85/173 (49%)
 Frame = +3

Query: 9    CGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAPNK 188
            C  G+ EE   L   M R G+ P++  Y  ++ G C +G +EEA  +  E  +    P+ 
Sbjct: 488  CKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDA 547

Query: 189  FTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLCDQ 368
            +TY IMIDGYCK   V              I  + V Y  L   +C+ G M +AF+L D 
Sbjct: 548  YTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDD 607

Query: 369  MSQRGLVFDEITYTTLVDGLTSSGFAREATLLSECIVKSGMVTPRVKAVDSLV 527
            M  RG+     TY++L+ GL++ G    A  L + + K G+ +P V    +L+
Sbjct: 608  MRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGL-SPNVVCYTALI 659



 Score = 97.4 bits (241), Expect = 3e-18
 Identities = 50/142 (35%), Positives = 80/142 (56%)
 Frame = +3

Query: 3   GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
           G+C  GR +EA      M +E + P++V Y  ++ G  KL   +EA  IL+EM ++  AP
Sbjct: 241 GLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAP 300

Query: 183 NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLC 362
           N   Y  +IDGYC++G++             GI+P+ VT N+L  G+CK  +ME A  L 
Sbjct: 301 NNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLL 360

Query: 363 DQMSQRGLVFDEITYTTLVDGL 428
           ++M   G V ++ T+T+++  L
Sbjct: 361 EEMLTGGGVINQGTFTSVIHRL 382



 Score = 90.9 bits (224), Expect = 3e-16
 Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 1/163 (0%)
 Frame = +3

Query: 9   CGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAPNK 188
           C  GR ++A  L   M + G+ PNVV Y +I+ G CK G ++EA +  ++M ++ V P+ 
Sbjct: 208 CTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSL 267

Query: 189 FTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLCDQ 368
            TY ++I+G  K+                G AP+ V YN L  G+C+ G +  A ++ D 
Sbjct: 268 VTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDD 327

Query: 369 MSQRGLVFDEITYTTLVDGLTSSGFAREAT-LLSECIVKSGMV 494
           M   G+  + +T  +L+ G   S     A  LL E +   G++
Sbjct: 328 MISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVI 370



 Score = 88.2 bits (217), Expect = 2e-15
 Identities = 49/159 (30%), Positives = 77/159 (48%)
 Frame = +3

Query: 3   GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
           G+C  G+  EA  L   +  +G   N V   +++ G C+ G  EEA ++L+EM+E+ +  
Sbjct: 416 GLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVL 475

Query: 183 NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLC 362
           +  +Y  +I   CK G V             GI PD+ TYN L +G C  GK+E+A  L 
Sbjct: 476 DSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLW 535

Query: 363 DQMSQRGLVFDEITYTTLVDGLTSSGFAREATLLSECIV 479
            +  + G   D  TY  ++DG   +    E   L + +V
Sbjct: 536 HECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMV 574



 Score = 86.3 bits (212), Expect = 6e-15
 Identities = 52/163 (31%), Positives = 76/163 (46%)
 Frame = +3

Query: 3   GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
           G C   + E A +LL  M   G V N   +TS++   C     + A   + EM+ +   P
Sbjct: 346 GYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKP 405

Query: 183 NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLC 362
           N    T+++ G C+ G               G A + VT NAL +G C+ G  E+A KL 
Sbjct: 406 NDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLL 465

Query: 363 DQMSQRGLVFDEITYTTLVDGLTSSGFAREATLLSECIVKSGM 491
            +M +RGLV D I+Y TL+      G   E   L E +V+ G+
Sbjct: 466 KEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGI 508



 Score = 85.5 bits (210), Expect = 1e-14
 Identities = 42/146 (28%), Positives = 71/146 (48%)
 Frame = +3

Query: 3   GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
           G+C +G+ EEA  L    ++ G  P+   Y  ++ G+CK   +EE  ++ QEM+   +  
Sbjct: 521 GLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQ 580

Query: 183 NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLC 362
           N   Y  +I  YC+ G++             GI     TY++L +G    G ++ A +L 
Sbjct: 581 NAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLL 640

Query: 363 DQMSQRGLVFDEITYTTLVDGLTSSG 440
           D+M + GL  + + YT L+ G    G
Sbjct: 641 DEMRKEGLSPNVVCYTALIGGYCKLG 666



 Score = 82.8 bits (203), Expect = 7e-14
 Identities = 49/168 (29%), Positives = 79/168 (47%)
 Frame = +3

Query: 3    GMCGIGRAEEANNLLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAP 182
            G C   R EE   L   M    +  N V Y +++  +C+ G M EA R+  +M  + +  
Sbjct: 556  GYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQ 615

Query: 183  NKFTYTIMIDGYCKMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLC 362
               TY+ +I G   +G V             G++P+VV Y AL  G+CK G+M K   + 
Sbjct: 616  TSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSIL 675

Query: 363  DQMSQRGLVFDEITYTTLVDGLTSSGFAREATLLSECIVKSGMVTPRV 506
             +MS   +  ++ITYT +++G    G  + A  L   + + G+V   V
Sbjct: 676  QEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAV 723



 Score = 77.4 bits (189), Expect = 3e-12
 Identities = 43/154 (27%), Positives = 77/154 (50%)
 Frame = +3

Query: 66  GLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAPNKFTYTIMIDGYCKMGHVXXX 245
           G+ P+V  ++++V  FC  G +++A  + ++M +  VAPN  TY  +I G CK G +   
Sbjct: 192 GVTPDVYLFSTMVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEA 251

Query: 246 XXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLCDQMSQRGLVFDEITYTTLVDG 425
                      + P +VTY  L  G  K  + ++A  +  +MS RG   + + Y TL+DG
Sbjct: 252 FQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDG 311

Query: 426 LTSSGFAREATLLSECIVKSGMVTPRVKAVDSLV 527
               G    A  + + ++ +G ++P     +SL+
Sbjct: 312 YCRIGNISTALQIRDDMISNG-ISPNSVTCNSLI 344



 Score = 68.9 bits (167), Expect = 1e-09
 Identities = 37/147 (25%), Positives = 72/147 (48%)
 Frame = +3

Query: 42  LLGTMRREGLVPNVVCYTSIVGGFCKLGLMEEARRILQEMIEQVVAPNKFTYTIMIDGYC 221
           L   +  +GL P++     ++    K   ++ + ++   M    V P+ + ++ M++ +C
Sbjct: 149 LFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFC 208

Query: 222 KMGHVXXXXXXXXXXXXXGIAPDVVTYNALTYGFCKEGKMEKAFKLCDQMSQRGLVFDEI 401
             G V             G+AP+VVTYN + +G CK G++++AF+  ++M +  +    +
Sbjct: 209 TGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLV 268

Query: 402 TYTTLVDGLTSSGFAREATLLSECIVK 482
           TY  L++GL       EA     CI+K
Sbjct: 269 TYGVLINGLVKLERFDEA----NCILK 291