BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00028311
         (480 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003617724.1| Pentatricopeptide repeat-containing protein ...   151   6e-35
emb|CBI26162.3| unnamed protein product [Vitis vinifera]              150   1e-34
gb|ABD96889.1| hypothetical protein [Cleome spinosa]                  143   1e-32
ref|XP_003530332.1| PREDICTED: pentatricopeptide repeat-containi...   142   2e-32
ref|XP_004155892.1| PREDICTED: pentatricopeptide repeat-containi...   141   6e-32

>ref|XP_003617724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355519059|gb|AET00683.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 861

 Score =  151 bits (381), Expect = 6e-35
 Identities = 81/161 (50%), Positives = 105/161 (65%), Gaps = 2/161 (1%)
 Frame = +3

Query: 3   KMLIGDMDFVPDIGSLELFVVCLCEDGDVDEGFEFFLHLRKVGYVPSLGVCNDMLSGCLG 182
           K L+   DFVP   SLE +V  L E+G V+E F+ F+ L+KVG++PS    N  L  CL 
Sbjct: 117 KSLLEYPDFVPKNDSLEGYVRLLGENGMVEEVFDVFVSLKKVGFLPSASSFNVCLLACLK 176

Query: 183 AERSDVVWKFYGEMMECGLAG--DADTVGYLIRAYCADNKCFEAYELLKQVLESGFVPHG 356
             R+D+VWK Y  M+E G+    D +TVG LI+A+CA+NK F  YELL+QVLE G     
Sbjct: 177 VGRTDLVWKLYELMIESGVGVNIDVETVGCLIKAFCAENKVFNGYELLRQVLEKGLCVDN 236

Query: 357 IVFCKLIARFCKVRDYGKVSELLHLMIAKNCAPTIFTYQEI 479
            VF  LI  FCK + Y +VSE+LH+MIA  C P+I+TYQEI
Sbjct: 237 TVFNALINGFCKQKQYDRVSEILHIMIAMKCNPSIYTYQEI 277


>emb|CBI26162.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score =  150 bits (378), Expect = 1e-34
 Identities = 72/159 (45%), Positives = 101/159 (63%)
 Frame = +3

Query: 3   KMLIGDMDFVPDIGSLELFVVCLCEDGDVDEGFEFFLHLRKVGYVPSLGVCNDMLSGCLG 182
           K  +   +F P   SLE ++ CLC+ G V+E    F  L+ +G   S+   N +L G + 
Sbjct: 180 KSFLDSTNFNPKPASLEAYIRCLCKGGLVEEAISVFGQLKGIGVCASIATWNSVLRGSVR 239

Query: 183 AERSDVVWKFYGEMMECGLAGDADTVGYLIRAYCADNKCFEAYELLKQVLESGFVPHGIV 362
           A R D VW+ YGEM+E  +  D  TVGYL++A+C +N+  + + LL++VLE G VP    
Sbjct: 240 AGRIDFVWELYGEMVESSVVADVHTVGYLVQAFCDENRISDGHNLLRRVLEDGVVPRNAA 299

Query: 363 FCKLIARFCKVRDYGKVSELLHLMIAKNCAPTIFTYQEI 479
           F KLI+ FCK + YG+VS+LLH MIA+N AP IFTYQE+
Sbjct: 300 FNKLISGFCKDKAYGRVSDLLHSMIARNRAPDIFTYQEV 338



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 42/181 (23%), Positives = 71/181 (39%), Gaps = 35/181 (19%)
 Frame = +3

Query: 33  PDIGSLELFVVCLCEDGDVDEGFEFFLHLRKVGYVPSL--------GVC----------- 155
           PDI + +  V  LC+ G   EGF  F  L+  GY P          G+C           
Sbjct: 330 PDIFTYQEVVNGLCKGGKGPEGFRVFKDLKDRGYAPDRVMYTTMIHGLCRMKWLGDARKL 389

Query: 156 ----------------NDMLSGCLGAERSDVVWKFYGEMMECGLAGDADTVGYLIRAYCA 287
                           N M+ G       +  WK Y EM + G      +   +I+  C+
Sbjct: 390 WFEMIQKGFLPNEYTYNAMIHGYFKIGNLEEAWKMYREMCDKGYGEKTVSYNVMIKGLCS 449

Query: 288 DNKCFEAYELLKQVLESGFVPHGIVFCKLIARFCKVRDYGKVSELLHLMIAKNCAPTIFT 467
             K  EA++L +++   G + + I +  L+  FCK     + + LL+ ++ +   P+  +
Sbjct: 450 HGKIKEAHDLFEEMSHKGILRNHITYNALVRGFCKEGKIVEGANLLYELLDQGIQPSAAS 509

Query: 468 Y 470
           Y
Sbjct: 510 Y 510


>gb|ABD96889.1| hypothetical protein [Cleome spinosa]
          Length = 719

 Score =  143 bits (361), Expect = 1e-32
 Identities = 72/161 (44%), Positives = 105/161 (65%), Gaps = 2/161 (1%)
 Frame = +3

Query: 3   KMLIGDMDFVPDIGSLELFVVCLCEDGDVDEGFEFFLHLRKVGYVPSLGVCNDMLSGCLG 182
           KM+     F+PD  SLE +V CLC  G ++E  E +  L++ G   S+  CN +LSGCL 
Sbjct: 144 KMVRDIAGFIPDSASLEQYVKCLCGVGFIEEAIEVYFQLKEAGIRISIVACNSILSGCLK 203

Query: 183 AERSDVVWKFYGEMMECGLAGDA--DTVGYLIRAYCADNKCFEAYELLKQVLESGFVPHG 356
           A +++++++FY EM++ G A DA  +TVG LI+A+C   +    YELL Q L++G  P  
Sbjct: 204 AGKTELLFEFYQEMIKAGTASDANTETVGCLIQAFCDSGQVARGYELLNQFLKTGLDPGN 263

Query: 357 IVFCKLIARFCKVRDYGKVSELLHLMIAKNCAPTIFTYQEI 479
             + KLIA FC+ ++Y  +SE+LH MIA+N  PTI+TYQEI
Sbjct: 264 PTYNKLIAGFCQAKNYASMSEVLHTMIARNHLPTIYTYQEI 304



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 40/149 (26%), Positives = 65/149 (43%)
 Frame = +3

Query: 33  PDIGSLELFVVCLCEDGDVDEGFEFFLHLRKVGYVPSLGVCNDMLSGCLGAERSDVVWKF 212
           P +   EL ++  C+DGD +        +   G  P+    + ML G L +   + V + 
Sbjct: 471 PSVSLYELLIIKSCKDGDFEAAKRLLGDMSSKGLHPNAYTYDTMLHGSLKSGDFEHVREL 530

Query: 213 YGEMMECGLAGDADTVGYLIRAYCADNKCFEAYELLKQVLESGFVPHGIVFCKLIARFCK 392
           Y E    G      T   +I   C+  K  EA E+ K++ E+G     I +  LI  FCK
Sbjct: 531 YNETCNKGYGTTTATCNKIISELCSRGKSDEASEMFKKMSETGIKADAITYNSLIRGFCK 590

Query: 393 VRDYGKVSELLHLMIAKNCAPTIFTYQEI 479
               GK   LL+ ++A+   P+  +Y  +
Sbjct: 591 EGKVGKSMNLLNELVAQGLQPSASSYASL 619



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 37/132 (28%), Positives = 61/132 (46%)
 Frame = +3

Query: 75  EDGDVDEGFEFFLHLRKVGYVPSLGVCNDMLSGCLGAERSDVVWKFYGEMMECGLAGDAD 254
           + GD +   E +  +   GY  +   CN ++S      +SD  ++ + +M E G+  DA 
Sbjct: 380 KSGDFERACELYNEMCNKGYGTTTVTCNKIISELCSRGKSDEAFEVFKKMSETGIQADAI 439

Query: 255 TVGYLIRAYCADNKCFEAYELLKQVLESGFVPHGIVFCKLIARFCKVRDYGKVSELLHLM 434
           T   LIR +C + K  E   LL +++     P   ++  LI + CK  D+     LL  M
Sbjct: 440 TYNSLIRGFCKEGKVDERMNLLNELVAQDPQPSVSLYELLIIKSCKDGDFEAAKRLLGDM 499

Query: 435 IAKNCAPTIFTY 470
            +K   P  +TY
Sbjct: 500 SSKGLHPNAYTY 511



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 40/152 (26%), Positives = 66/152 (43%)
 Frame = +3

Query: 18  DMDFVPDIGSLELFVVCLCEDGDVDEGFEFFLHLRKVGYVPSLGVCNDMLSGCLGAERSD 197
           D  + PD       +  LCE G   E  + +  +   G  P+    N ML G L +   +
Sbjct: 326 DRGYAPDRVMYTTMIHGLCEMGSFGEARKLWFEMMDKGMQPNAYTYNTMLHGSLKSGDFE 385

Query: 198 VVWKFYGEMMECGLAGDADTVGYLIRAYCADNKCFEAYELLKQVLESGFVPHGIVFCKLI 377
              + Y EM   G      T   +I   C+  K  EA+E+ K++ E+G     I +  LI
Sbjct: 386 RACELYNEMCNKGYGTTTVTCNKIISELCSRGKSDEAFEVFKKMSETGIQADAITYNSLI 445

Query: 378 ARFCKVRDYGKVSELLHLMIAKNCAPTIFTYQ 473
             FCK     +   LL+ ++A++  P++  Y+
Sbjct: 446 RGFCKEGKVDERMNLLNELVAQDPQPSVSLYE 477



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 3/154 (1%)
 Frame = +3

Query: 3   KMLIGDMD---FVPDIGSLELFVVCLCEDGDVDEGFEFFLHLRKVGYVPSLGVCNDMLSG 173
           K L+GDM      P+  + +  +    + GD +   E +      GY  +   CN ++S 
Sbjct: 493 KRLLGDMSSKGLHPNAYTYDTMLHGSLKSGDFEHVRELYNETCNKGYGTTTATCNKIISE 552

Query: 174 CLGAERSDVVWKFYGEMMECGLAGDADTVGYLIRAYCADNKCFEAYELLKQVLESGFVPH 353
                +SD   + + +M E G+  DA T   LIR +C + K  ++  LL +++  G  P 
Sbjct: 553 LCSRGKSDEASEMFKKMSETGIKADAITYNSLIRGFCKEGKVGKSMNLLNELVAQGLQPS 612

Query: 354 GIVFCKLIARFCKVRDYGKVSELLHLMIAKNCAP 455
              +  LI + C+  D      L   M++K   P
Sbjct: 613 ASSYASLIIQLCQNGDAESAKRLWGDMVSKGIEP 646


>ref|XP_003530332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Glycine max]
          Length = 577

 Score =  142 bits (359), Expect = 2e-32
 Identities = 73/161 (45%), Positives = 102/161 (63%), Gaps = 2/161 (1%)
 Frame = +3

Query: 3   KMLIGDMDFVPDIGSLELFVVCLCEDGDVDEGFEFFLHLRKVGYVPSLGVCNDMLSGCLG 182
           K L+    F P+  SLE ++ CL   G V++  +    L++V + PS+   N  L GCL 
Sbjct: 133 KSLLDSPGFTPEPASLEGYIQCLSGAGMVEDAVDM---LKRVVFCPSVATWNASLLGCLR 189

Query: 183 AERSDVVWKFYGEMMECGLAG--DADTVGYLIRAYCADNKCFEAYELLKQVLESGFVPHG 356
           A R+D+VW  Y +MME G+    + +TVGYLI A+CA+ K  + YELLK++LE+G  P  
Sbjct: 190 ARRTDLVWTLYEQMMESGVVASINVETVGYLIMAFCAEYKVLKGYELLKELLENGLCPDN 249

Query: 357 IVFCKLIARFCKVRDYGKVSELLHLMIAKNCAPTIFTYQEI 479
           +VF +LI  FCK   Y +VSE+LH+MIAK C P + TYQEI
Sbjct: 250 VVFNELIRGFCKEGQYDRVSEILHIMIAKQCNPDVSTYQEI 290



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 37/154 (24%), Positives = 67/154 (43%)
 Frame = +3

Query: 18  DMDFVPDIGSLELFVVCLCEDGDVDEGFEFFLHLRKVGYVPSLGVCNDMLSGCLGAERSD 197
           D  + PD       +  LCE   + E  + +  + K G+ P+    N M+ G        
Sbjct: 311 DRGYFPDRVMYTTVIKGLCEMQRLGEARKLWFEMIKKGFQPNEYTYNVMMHGYCKIGDLA 370

Query: 198 VVWKFYGEMMECGLAGDADTVGYLIRAYCADNKCFEAYELLKQVLESGFVPHGIVFCKLI 377
              K + +M + G A    + G +I   C   +  EA  L +++ + G VP  I +  LI
Sbjct: 371 EARKIFEDMRDRGYAETTVSYGTMISGLCLHGRTDEAQSLFEEMFQKGIVPDLITYNCLI 430

Query: 378 ARFCKVRDYGKVSELLHLMIAKNCAPTIFTYQEI 479
              CK     K  +LL+L++A+    ++F++  +
Sbjct: 431 KALCKEVKIVKARKLLNLLLAQGLELSVFSFSPL 464


>ref|XP_004155892.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Cucumis sativus]
          Length = 638

 Score =  141 bits (355), Expect = 6e-32
 Identities = 74/161 (45%), Positives = 98/161 (60%), Gaps = 2/161 (1%)
 Frame = +3

Query: 3   KMLIGDMDFVPDIGSLELFVVCLCEDGDVDEGFEFFLHLRKVGYVPSLGVCNDMLSGCLG 182
           K  +   +F P+  SLE ++ C+CE G V+E    F  L++ GY P +   N     CL 
Sbjct: 179 KSFLYSFEFSPEPASLENYIRCVCEGGLVEEAVYTFDMLKEAGYRPYVETWNFAFQSCLK 238

Query: 183 AERSDVVWKFYGEMMECGLAGDAD--TVGYLIRAYCADNKCFEAYELLKQVLESGFVPHG 356
             R+D++WK Y  MME G+  D D  TVGYLI+A+C DNK   AYE+L+Q LE G  P  
Sbjct: 239 FGRTDLIWKLYEGMMETGVQKDVDIETVGYLIQAFCNDNKVSRAYEILRQSLEDGLTPCN 298

Query: 357 IVFCKLIARFCKVRDYGKVSELLHLMIAKNCAPTIFTYQEI 479
             F KLI+ FCK +++ +V EL+H MI KN  P IFTYQEI
Sbjct: 299 DAFNKLISGFCKEKNHHRVLELVHTMIVKNRNPDIFTYQEI 339



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 37/154 (24%), Positives = 70/154 (45%)
 Frame = +3

Query: 18  DMDFVPDIGSLELFVVCLCEDGDVDEGFEFFLHLRKVGYVPSLGVCNDMLSGCLGAERSD 197
           D  F+P+  S    +   C+ G++DE  + +  +   GY  +   CN ++ G     R+D
Sbjct: 396 DKGFLPNEYSYNTLIYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTD 455

Query: 198 VVWKFYGEMMECGLAGDADTVGYLIRAYCADNKCFEAYELLKQVLESGFVPHGIVFCKLI 377
             + F+ EM    +  D  T   LI+ +C + K  ++ +LLK++   G  P    +  LI
Sbjct: 456 EAYDFFREMPCKNIVCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLI 515

Query: 378 ARFCKVRDYGKVSELLHLMIAKNCAPTIFTYQEI 479
            + C++    +  E+ + M  +   P + T   I
Sbjct: 516 QKLCQLGSVQEAKEMWNDMHNRGLQPMVCTRDHI 549