BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00028059
         (500 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635109.1| PREDICTED: pentatricopeptide repeat-containi...   132   2e-29
ref|XP_002332091.1| predicted protein [Populus trichocarpa] gi|2...   119   3e-25
gb|ACU21279.1| unknown [Glycine max]                                  116   2e-24
ref|XP_003541593.1| PREDICTED: pentatricopeptide repeat-containi...   115   5e-24
ref|NP_568460.1| pentatricopeptide repeat-containing protein [Ar...   111   7e-23

>ref|XP_003635109.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g24830-like [Vitis vinifera]
          Length = 580

 Score =  132 bits (333), Expect = 2e-29
 Identities = 59/89 (66%), Positives = 73/89 (82%)
 Frame = -1

Query: 500 NLLIGAACNLGHVRFATQLYDEMLRRGYEPDVITFTELIRVHCMRGNIMEATELLGKIHR 321
           NLLIGAACN G + FA +LYDEMLRRGYEPD+IT+TELIR  C+RG++MEA ELL K+ R
Sbjct: 488 NLLIGAACNFGRIHFALRLYDEMLRRGYEPDIITYTELIRGFCIRGHVMEAEELLAKLQR 547

Query: 320 SGAGVDHVPYQIIIKKYCNMRDPKKAFDL 234
           SG  +DH P+QI+I+KYC  R P +A+DL
Sbjct: 548 SGLSIDHAPFQILIQKYCRTRVPGRAYDL 576



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 37/133 (27%), Positives = 63/133 (47%)
 Frame = -1

Query: 500 NLLIGAACNLGHVRFATQLYDEMLRRGYEPDVITFTELIRVHCMRGNIMEATELLGKIHR 321
           N+LI   C +  +  A + + EM +RG  PD+ T+  LI   C  GN+ EA  + G + +
Sbjct: 313 NVLIHGFCLIQDMNSAYRYFCEMFKRGLLPDIFTYNTLISGFCKIGNLDEACYIHGVMSK 372

Query: 320 SGAGVDHVPYQIIIKKYCNMRDPKKAFDLYEEMVEKGLTCRFSMYYALTKELGRKGFTRE 141
            GA  D + Y++II+  C   D  +A      M+E  +     ++  +    GR G    
Sbjct: 373 MGAAPDLISYKMIIQGLCIHGDVIRANQFLVCMLENLMVPEPLIWNVVIDGHGRHGDLSN 432

Query: 140 AVQVCNDMDMLGL 102
           A+ + + M   G+
Sbjct: 433 ALSIRDQMVSFGI 445


>ref|XP_002332091.1| predicted protein [Populus trichocarpa] gi|222874911|gb|EEF12042.1|
           predicted protein [Populus trichocarpa]
          Length = 521

 Score =  119 bits (298), Expect = 3e-25
 Identities = 54/92 (58%), Positives = 72/92 (78%)
 Frame = -1

Query: 500 NLLIGAACNLGHVRFATQLYDEMLRRGYEPDVITFTELIRVHCMRGNIMEATELLGKIHR 321
           NLLIGAA + GH+ +A QLYDEMLR G  PD+IT+TELIR +C++ N  EA ELL K+ +
Sbjct: 407 NLLIGAAAHAGHIHYALQLYDEMLRGGCNPDMITYTELIRGYCVKYNTKEAEELLAKLLK 466

Query: 320 SGAGVDHVPYQIIIKKYCNMRDPKKAFDLYEE 225
           SG  +DHVP+QI+IK+YC M++P +AF LY +
Sbjct: 467 SGLLIDHVPFQILIKQYCKMKEPDRAFQLYRK 498


>gb|ACU21279.1| unknown [Glycine max]
          Length = 112

 Score =  116 bits (290), Expect = 2e-24
 Identities = 54/95 (56%), Positives = 70/95 (73%)
 Frame = -1

Query: 500 NLLIGAACNLGHVRFATQLYDEMLRRGYEPDVITFTELIRVHCMRGNIMEATELLGKIHR 321
           NLLIGAACN+G   FA QL++EM++RGYEPD+IT+TEL+R  C RG + EA EL  KI +
Sbjct: 14  NLLIGAACNIGRPDFALQLHNEMVQRGYEPDLITYTELVRGFCTRGKMKEAEELYAKILK 73

Query: 320 SGAGVDHVPYQIIIKKYCNMRDPKKAFDLYEEMVE 216
           SG   DHVP QII  KYC + +P +AF  Y++ +E
Sbjct: 74  SGLLNDHVPVQIIFNKYCKLEEPVRAFKFYQDWLE 108


>ref|XP_003541593.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g24830-like [Glycine max]
          Length = 577

 Score =  115 bits (287), Expect = 5e-24
 Identities = 52/95 (54%), Positives = 72/95 (75%)
 Frame = -1

Query: 500 NLLIGAACNLGHVRFATQLYDEMLRRGYEPDVITFTELIRVHCMRGNIMEATELLGKIHR 321
           NLLIGAACN+G + FA  L+D+M++RGYEPD+IT+TEL+R  C+RG + EA EL  KI +
Sbjct: 476 NLLIGAACNIGRLDFALLLHDQMVQRGYEPDLITYTELVRGFCIRGKMKEAEELYAKILK 535

Query: 320 SGAGVDHVPYQIIIKKYCNMRDPKKAFDLYEEMVE 216
           SG   DHVP QI+  KYC +++P  AF+ Y++ +E
Sbjct: 536 SGLLNDHVPVQILFNKYCKLKEPVIAFNFYQDWLE 570


>ref|NP_568460.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75154065|sp|Q8L6Y3.1|PP396_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g24830 gi|22655280|gb|AAM98230.1| putative protein
           [Arabidopsis thaliana] gi|30725398|gb|AAP37721.1|
           At5g24830 [Arabidopsis thaliana]
           gi|332005984|gb|AED93367.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 593

 Score =  111 bits (277), Expect = 7e-23
 Identities = 52/114 (45%), Positives = 80/114 (70%), Gaps = 3/114 (2%)
 Frame = -1

Query: 500 NLLIGAACNLGHVRFATQLYDEMLRRGYEPDVITFTELIRVHCMRGNIMEATELLGKIHR 321
           NLL+GAAC LGH+R A QLYDEMLRRG +PD+IT+TEL+R  C +G + +A  LL +I  
Sbjct: 479 NLLLGAACTLGHLRLAFQLYDEMLRRGCQPDIITYTELVRGLCWKGRLKKAESLLSRIQA 538

Query: 320 SGAGVDHVPYQIIIKKYCNMRDPKKAFDLYEEMV---EKGLTCRFSMYYALTKE 168
           +G  +DHVP+ I+ KKY  ++ P +A+ +Y++ +    +G++C   + +  T+E
Sbjct: 539 TGITIDHVPFLILAKKYTRLQRPGEAYLVYKKWLATRNRGVSCPSILNHMHTEE 592



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 39/133 (29%), Positives = 63/133 (47%)
 Frame = -1

Query: 500 NLLIGAACNLGHVRFATQLYDEMLRRGYEPDVITFTELIRVHCMRGNIMEATELLGKIHR 321
           N++I   C+ G++  A     +M++RG  PDV T+  LI   C  G   EA +L G +  
Sbjct: 304 NVIIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKEGKFDEACDLHGTMQN 363

Query: 320 SGAGVDHVPYQIIIKKYCNMRDPKKAFDLYEEMVEKGLTCRFSMYYALTKELGRKGFTRE 141
            G   D + Y++II+  C   D  +A +    M++  L     ++  +    GR G T  
Sbjct: 364 GGVAPDQISYKVIIQGLCIHGDVNRANEFLLSMLKSSLLPEVLLWNVVIDGYGRYGDTSS 423

Query: 140 AVQVCNDMDMLGL 102
           A+ V N M   G+
Sbjct: 424 ALSVLNLMLSYGV 436