BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00027990
         (477 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN68155.1| hypothetical protein VITISV_040299 [Vitis vinifera]    69   2e-24
emb|CAN63189.1| hypothetical protein VITISV_005008 [Vitis vinifera]    77   9e-24
gb|ABA98797.2| retrotransposon protein, putative, Ty1-copia subc...    79   3e-15
emb|CAN64116.1| hypothetical protein VITISV_041858 [Vitis vinifera]    84   1e-14
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap...    79   2e-14

>emb|CAN68155.1| hypothetical protein VITISV_040299 [Vitis vinifera]
          Length = 323

 Score = 68.9 bits (167), Expect(2) = 2e-24
 Identities = 30/55 (54%), Positives = 42/55 (76%)
 Frame = -2

Query: 281 RSVFIRYSETSKGYVFLGEDTQGHVTEIEARNVRFLEDQYPMRGEVDKDLRLYEV 117
           + +FIRYSE SKG+VF+GE   G VTE+E+++V FLE  +   GE+D+DL LYE+
Sbjct: 259 KCIFIRYSEYSKGFVFIGEREDGTVTELESQDVTFLEGDFQRMGEIDRDLHLYEI 313



 Score = 68.6 bits (166), Expect(2) = 2e-24
 Identities = 30/65 (46%), Positives = 44/65 (67%)
 Frame = -1

Query: 462 GDALLTAAHILNLVPSKSVDKTPYELWTGRQPVLNYLRPWGCAAFVTSQNREFGKLSAPG 283
           GDALLT +H+ N VPSK V  T YELW  R+   + L+PW   A+V + + ++GKL+  G
Sbjct: 198 GDALLTTSHVPNQVPSKFVSSTSYELWNNRKLDPSNLQPWKLVAYVHNSSHKYGKLAHRG 257

Query: 282 KKCVY 268
           +KC++
Sbjct: 258 RKCIF 262


>emb|CAN63189.1| hypothetical protein VITISV_005008 [Vitis vinifera]
          Length = 320

 Score = 77.4 bits (189), Expect(2) = 9e-24
 Identities = 33/65 (50%), Positives = 47/65 (72%)
 Frame = -1

Query: 462 GDALLTAAHILNLVPSKSVDKTPYELWTGRQPVLNYLRPWGCAAFVTSQNREFGKLSAPG 283
           GDALLTA ++LN VP K++  TPYELW  R+  L+ LRPWG AA++   + ++GKL   G
Sbjct: 109 GDALLTATYVLNQVPLKTIASTPYELWNNRKCDLSNLRPWGSAAYIHILSHKYGKLGPRG 168

Query: 282 KKCVY 268
           +KC++
Sbjct: 169 RKCIF 173



 Score = 57.8 bits (138), Expect(2) = 9e-24
 Identities = 27/49 (55%), Positives = 38/49 (77%), Gaps = 1/49 (2%)
 Frame = -2

Query: 281 RSVFIRYSETSKGYVFLGEDTQGHVTEIEARNVRFLEDQYPMR-GEVDK 138
           + +FIRYSE SKGYVF+GE   G VTE+E+R+  FLED + +R G++D+
Sbjct: 170 KCIFIRYSEHSKGYVFIGEHEDGIVTELESRDATFLEDNFHVRPGDLDE 218


>gb|ABA98797.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1243

 Score = 79.3 bits (194), Expect(2) = 3e-15
 Identities = 35/70 (50%), Positives = 48/70 (68%)
 Frame = -1

Query: 477 PISFWGDALLTAAHILNLVPSKSVDKTPYELWTGRQPVLNYLRPWGCAAFVTSQNREFGK 298
           P ++WG+ALLT+ H+LN VP+++ DKTPYE+W GR+P L+YLR WGC A V     +  K
Sbjct: 556 PKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRK 615

Query: 297 LSAPGKKCVY 268
           L      CV+
Sbjct: 616 LGPKTVDCVF 625



 Score = 26.9 bits (58), Expect(2) = 3e-15
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = -2

Query: 275 VFIRYSETSKGYVFL---GEDTQGHV-TEIEARNVRFLEDQYPMR 153
           VF+ Y+  S  Y FL    E    HV T +E+R+  FLE  +PM+
Sbjct: 624 VFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFLESFFPMK 668


>emb|CAN64116.1| hypothetical protein VITISV_041858 [Vitis vinifera]
          Length = 1471

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 37/69 (53%), Positives = 47/69 (68%)
 Frame = -1

Query: 477  PISFWGDALLTAAHILNLVPSKSVDKTPYELWTGRQPVLNYLRPWGCAAFVTSQNREFGK 298
            PIS+WGDALLT +H+LN VPSK V  TPYELW  R+P    LRPW   A+V +   ++ K
Sbjct: 1341 PISYWGDALLTTSHVLNQVPSKFVSSTPYELWNXRKPNPGNLRPWRSVAYVHNPLHKYEK 1400

Query: 297  LSAPGKKCV 271
            L   G+KC+
Sbjct: 1401 LGHXGRKCI 1409



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 35/69 (50%), Positives = 46/69 (66%)
 Frame = -2

Query: 323  LLKIENLGS*VLLERSVFIRYSETSKGYVFLGEDTQGHVTEIEARNVRFLEDQYPMRGEV 144
            L K E LG      + + IRYSE SKGYV +GE   G VTE+++R+V FLE  +P  GE+
Sbjct: 1395 LHKYEKLGH--XGRKCIXIRYSEHSKGYVLIGEHEDGIVTELKSRDVMFLEGNFPRIGEI 1452

Query: 143  DKDLRLYEV 117
            D+DL LYE+
Sbjct: 1453 DRDLHLYEI 1461


>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
           gi|62701883|gb|AAX92956.1| retrotransposon protein,
           putative, Ty1-copia sub-class [Oryza sativa Japonica
           Group] gi|108864259|gb|ABA92827.2| retrotransposon
           protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1184

 Score = 78.6 bits (192), Expect(2) = 2e-14
 Identities = 36/69 (52%), Positives = 48/69 (69%)
 Frame = -1

Query: 474 ISFWGDALLTAAHILNLVPSKSVDKTPYELWTGRQPVLNYLRPWGCAAFVTSQNREFGKL 295
           +SFWG AL T A  LN VPSKSVDKTPYE+WTG++P L++L+ WGC  +V  +  +  KL
Sbjct: 598 LSFWGYALETTAFTLNSVPSKSVDKTPYEIWTGKRPSLSFLKIWGCEVYV--KRLQSDKL 655

Query: 294 SAPGKKCVY 268
           +    KC +
Sbjct: 656 TPKSDKCFF 664



 Score = 25.0 bits (53), Expect(2) = 2e-14
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -2

Query: 284 ERSVFIRYSETSKGYVFLGEDTQGHVTEIEARNVRFLEDQYPMRGEV 144
           ++  F+ Y + +KGY F  ++ +G V    AR+  FLE ++  R ++
Sbjct: 660 DKCFFVGYPKETKGYYFYNQE-EGKV--FVARHGVFLEKEFISRKDI 703