BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00026974
         (506 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002528093.1| 3'-5' exonuclease, putative [Ricinus communi...   137   9e-31
ref|NP_187847.1| DEDDy 3'-5' exonuclease domain-containing prote...   123   2e-26
ref|XP_003594711.1| 3-5 exonuclease/ nucleic acid binding protei...   120   1e-25
ref|NP_187852.1| DEDDy 3'-5' exonuclease domain-containing prote...   119   3e-25
dbj|BAB03152.1| unnamed protein product [Arabidopsis thaliana]        119   3e-25

>ref|XP_002528093.1| 3'-5' exonuclease, putative [Ricinus communis]
           gi|223532482|gb|EEF34272.1| 3'-5' exonuclease, putative
           [Ricinus communis]
          Length = 247

 Score =  137 bits (345), Expect = 9e-31
 Identities = 73/152 (48%), Positives = 95/152 (62%)
 Frame = +2

Query: 50  TQNPNLRMYTIKFFDKRFTTTVTSSPYEIRKWIRSTWYHYSAYRTQLIVGLGVQWNPDSD 229
           T +PN R YT+ FF    + TVTSS   +RKW+ +T +H   Y  +L+V +GVQWNP   
Sbjct: 9   THSPNCRFYTVSFFGSPISVTVTSSASVVRKWLSTTIFHRRYYVGRLVVCVGVQWNPFKS 68

Query: 230 NNNPADTLQLCVGSRCLIIQLSQTDYVPELLRRFLGDTDTTFVGIWNHSDESRLEQCEHE 409
           +   ADTLQLCVG  CLI +LS    VP LLRRFL DT  T VG+WN SDE  L  C+H 
Sbjct: 69  DCLSADTLQLCVGGHCLIFKLSLATRVPRLLRRFLLDTRNTLVGLWNGSDEKMLRNCDHG 128

Query: 410 LVLGSEPIDLRYKVADRFGEYELQRASMESLV 505
           L++    +DLR  V +  G+  L  AS+E++V
Sbjct: 129 LLV-HRLVDLRRYVENEDGK-SLSNASVENIV 158


>ref|NP_187847.1| DEDDy 3'-5' exonuclease domain-containing protein [Arabidopsis
           thaliana] gi|12321965|gb|AAG51022.1|AC069474_21
           hypothetical protein; 80835-81527 [Arabidopsis thaliana]
           gi|15795160|dbj|BAB03148.1| unnamed protein product
           [Arabidopsis thaliana] gi|51970428|dbj|BAD43906.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|332641673|gb|AEE75194.1| DEDDy 3'-5' exonuclease
           domain-containing protein [Arabidopsis thaliana]
          Length = 230

 Score =  123 bits (308), Expect = 2e-26
 Identities = 73/177 (41%), Positives = 100/177 (56%), Gaps = 19/177 (10%)
 Frame = +2

Query: 32  SISELSTQNPNLRMYTIKFFDKRFTTTVTSSPYEIRKWIRSTWYHYSAYRTQLIVGLGVQ 211
           +I  +++ N +L  Y++ FF   F  TVT     I +WIR+  ++       L+VG+GVQ
Sbjct: 5   TIRTVASYNTHLE-YSVDFFGDEFIVTVTWDSSVISRWIRNVLFNNRFSSHPLVVGVGVQ 63

Query: 212 WNPDS------DNN-------------NPADTLQLCVGSRCLIIQLSQTDYVPELLRRFL 334
           W P S       NN             NPAD LQLCVG+RCLIIQL   D VP  LR FL
Sbjct: 64  WTPFSYYSDPRPNNYYADPPPIRYYSDNPADILQLCVGNRCLIIQLGYCDQVPNNLRSFL 123

Query: 335 GDTDTTFVGIWNHSDESRLEQCEHELVLGSEPIDLRYKVADRFGEYELQRASMESLV 505
            D +TTFVG+WN  D  +L +C H+L +G E +D+R  V D +G   ++R+S E +V
Sbjct: 124 ADPETTFVGVWNGQDAGKLARCCHQLEIG-ELLDIRRYVTDSWGR-SMRRSSFEEIV 178


>ref|XP_003594711.1| 3-5 exonuclease/ nucleic acid binding protein [Medicago truncatula]
           gi|355483759|gb|AES64962.1| 3-5 exonuclease/ nucleic
           acid binding protein [Medicago truncatula]
          Length = 219

 Score =  120 bits (301), Expect = 1e-25
 Identities = 63/152 (41%), Positives = 89/152 (58%), Gaps = 6/152 (3%)
 Frame = +2

Query: 68  RMYTIKFFDKRFTTTVTSSPYEIRKWIRSTWYHYSA----YRTQLIVGLGVQWNPDSDNN 235
           R+YT+       T TVT+    +RKWI +T + +          L+ GLGVQW  +    
Sbjct: 14  RLYTVNVHGNDITVTVTAVASVVRKWISTTLFLFRRRTYLQSNHLVAGLGVQWTANG-RY 72

Query: 236 NPADTLQLCVGSRCLIIQLSQTDYVPELLRRFLGDTDTTFVGIWNHSDESRLEQCEHELV 415
            P DTLQLC+G RCLI QL+  +Y+P +LRRFL + D TFVG WNHSD  +LE  +H   
Sbjct: 73  PPPDTLQLCIGRRCLIYQLTHANYIPRILRRFLENPDHTFVGFWNHSDRRKLEMSKHGFD 132

Query: 416 LGSEPIDLRY--KVADRFGEYELQRASMESLV 505
           L  +P+DLR+  +  D   + +L R+S+  +V
Sbjct: 133 LYRDPLDLRHYAEALDEDDDEDLARSSVPLIV 164


>ref|NP_187852.1| DEDDy 3'-5' exonuclease domain-containing protein [Arabidopsis
           thaliana] gi|12321946|gb|AAG51003.1|AC069474_2
           hypothetical protein; 72371-73099 [Arabidopsis thaliana]
           gi|15795165|dbj|BAB03153.1| unnamed protein product
           [Arabidopsis thaliana] gi|332641677|gb|AEE75198.1| DEDDy
           3'-5' exonuclease domain-containing protein [Arabidopsis
           thaliana]
          Length = 242

 Score =  119 bits (298), Expect = 3e-25
 Identities = 65/172 (37%), Positives = 90/172 (52%), Gaps = 28/172 (16%)
 Frame = +2

Query: 74  YTIKFFDKRFTTTVTSSPYEIRKWIRSTWYHYSAYRTQLIVGLGVQWNPDS--------- 226
           Y++ FF +    TVT  P  I +WI   ++H       L+VG+GVQW P           
Sbjct: 17  YSVDFFGEELFVTVTPDPSVIGQWIHDVFFHNRLSSHPLVVGVGVQWTPSGYHPASPPVS 76

Query: 227 -------------------DNNNPADTLQLCVGSRCLIIQLSQTDYVPELLRRFLGDTDT 349
                               ++ PADTLQLCVG+RC+IIQL   + VP++LR FL D D 
Sbjct: 77  YRSDSSPDSYRSDSPPVFYSSDPPADTLQLCVGNRCIIIQLRYCERVPQVLRNFLADRDN 136

Query: 350 TFVGIWNHSDESRLEQCEHELVLGSEPIDLRYKVADRFGEYELQRASMESLV 505
           TFVGIWN  D  +LE+  H+L + +E +DLR  V+D  G   +   S+E +V
Sbjct: 137 TFVGIWNSQDAGKLERSRHQLEI-AELMDLREFVSDSSGRRSMYNYSLEKIV 187


>dbj|BAB03152.1| unnamed protein product [Arabidopsis thaliana]
          Length = 210

 Score =  119 bits (297), Expect = 3e-25
 Identities = 63/144 (43%), Positives = 84/144 (58%)
 Frame = +2

Query: 74  YTIKFFDKRFTTTVTSSPYEIRKWIRSTWYHYSAYRTQLIVGLGVQWNPDSDNNNPADTL 253
           Y++ FF +  T TVT  P  I +WI     +       L+VG+GVQW P    + PADTL
Sbjct: 17  YSVNFFGEELTVTVTPDPSVIGQWIHDVLSNNRFSSHPLVVGVGVQWTPPG-YDPPADTL 75

Query: 254 QLCVGSRCLIIQLSQTDYVPELLRRFLGDTDTTFVGIWNHSDESRLEQCEHELVLGSEPI 433
           QLCVG+RC+IIQLS  D VP +L  FL   D TFVG+WN  D  +LE+  H+L +  + +
Sbjct: 76  QLCVGNRCIIIQLSHCDRVPRVLHNFLAYPDYTFVGVWNSQDARKLERSRHQLEI-DDLL 134

Query: 434 DLRYKVADRFGEYELQRASMESLV 505
           DLR  V D  G   ++  S E +V
Sbjct: 135 DLRKYVEDSSGRRSMRGCSFEVIV 158