BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00026848
         (311 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...    98   8e-19
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...    90   2e-16
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    89   3e-16
emb|CAA12932.1| reverse transcriptase [Pinus elliottii]                80   1e-13
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...    79   5e-13

>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 50/103 (48%), Positives = 66/103 (64%)
 Frame = +1

Query: 1   FREAYIPREVNNNFLALIPKDRNAKKASQYRPICMSNFFMKILSKIMQTRLKTIISKLVS 180
           F   +I    N N L LIPK +NA    Q+RPI M+NF  KI+SKI+  RL  I+  +VS
Sbjct: 163 FNTGWILPNFNANTLILIPKTQNADSMDQFRPIAMANFKFKIISKILADRLAQIMPNIVS 222

Query: 181 IEQAGFIHGRSIHANICMASEMINAMKQKKTGGSIGLKIDISQ 309
            EQ GFI GR+I   +C+ASE IN + QK  GG++  K+DIS+
Sbjct: 223 QEQRGFIQGRNIKDCVCLASEAINMLDQKSFGGNLAFKVDISK 265


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 42/103 (40%), Positives = 63/103 (61%)
 Frame = +1

Query: 1   FREAYIPREVNNNFLALIPKDRNAKKASQYRPICMSNFFMKILSKIMQTRLKTIISKLVS 180
           F+  ++P   N N + LIPK  NA    QYR I + NF  KI++K++  RL  I+  ++S
Sbjct: 224 FKNGWLPNNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIIS 283

Query: 181 IEQAGFIHGRSIHANICMASEMINAMKQKKTGGSIGLKIDISQ 309
            EQ GF+ GR+I   I + SE IN +  K  GG++ LKID+++
Sbjct: 284 KEQRGFVQGRNIRDCIALTSEAINVLDNKSFGGNLALKIDVTK 326


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 41/103 (39%), Positives = 67/103 (65%)
 Frame = +1

Query: 1   FREAYIPREVNNNFLALIPKDRNAKKASQYRPICMSNFFMKILSKIMQTRLKTIISKLVS 180
           F    + + +N+N + LIPK   A+    YRPI ++NF  KI+SKI+  RL  I  +++S
Sbjct: 489 FISGQLAQNINSNLIVLIPKVPGARVMGDYRPIALANFQFKIISKILADRLADITMRIIS 548

Query: 181 IEQAGFIHGRSIHANICMASEMINAMKQKKTGGSIGLKIDISQ 309
           +EQ GFI  R I   + +ASE IN +++++ GG++ LK+DI++
Sbjct: 549 VEQRGFIRDRDISKCVILASEAINLLEKRQYGGNVALKVDIAK 591


>emb|CAA12932.1| reverse transcriptase [Pinus elliottii]
          Length = 194

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 38/102 (37%), Positives = 66/102 (64%)
 Frame = +1

Query: 4   REAYIPREVNNNFLALIPKDRNAKKASQYRPICMSNFFMKILSKIMQTRLKTIISKLVSI 183
           R   I + +N+ F+AL+PK   A    ++RPI + N   KI+SK++  RLK I+  ++S 
Sbjct: 32  RSKTILKSLNSTFIALVPKVEEAHTPEKFRPIALCNVIYKIISKVIANRLKIILPGIISQ 91

Query: 184 EQAGFIHGRSIHANICMASEMINAMKQKKTGGSIGLKIDISQ 309
           EQ+G++ GR I  NI +A EMI+++  +K  G + +++D+S+
Sbjct: 92  EQSGYVEGRQILDNILLAQEMIHSLHSRKVAGML-IQLDLSK 132


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 36/103 (34%), Positives = 60/103 (58%)
 Frame = +1

Query: 1   FREAYIPREVNNNFLALIPKDRNAKKASQYRPICMSNFFMKILSKIMQTRLKTIISKLVS 180
           F + ++P+ +N+  LALIPK + AK+   YRPI   N   K++SKI+  RLK ++ K + 
Sbjct: 388 FAKGFLPKGINSTILALIPKKKEAKEMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIV 447

Query: 181 IEQAGFIHGRSIHANICMASEMINAMKQKKTGGSIGLKIDISQ 309
             Q+ F+  R +  N+ +A+E++    +        LKIDIS+
Sbjct: 448 GNQSAFVKDRLLIENVLLATEIVKDYHKDSVSSRCALKIDISK 490