BLASTX nr result
ID: Coptis21_contig00026818
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00026818
(2293 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002273989.2| PREDICTED: pentatricopeptide repeat-containi... 235 4e-59
emb|CBI32643.3| unnamed protein product [Vitis vinifera] 235 4e-59
ref|XP_002323442.1| predicted protein [Populus trichocarpa] gi|2... 231 6e-58
ref|XP_003550640.1| PREDICTED: pentatricopeptide repeat-containi... 213 2e-52
ref|XP_003624377.1| Pentatricopeptide repeat-containing protein ... 213 2e-52
>ref|XP_002273989.2| PREDICTED: pentatricopeptide repeat-containing protein At2g37320-like
[Vitis vinifera]
Length = 510
Score = 235 bits (599), Expect = 4e-59
Identities = 132/249 (53%), Positives = 159/249 (63%), Gaps = 6/249 (2%)
Frame = +3
Query: 1470 KKYMFIYFITPNNNNKCTQQPQNHIRLI*SCMQELQQPTHLDTTPCMFDKMHERNNVCWG 1649
K+ + ++P + C + Q H+RLI L PT+ D N++
Sbjct: 41 KQLGILNLVSPTTD--CAENRQTHLRLI---QDFLPIPTNQFAQKRASDDFAHSNSLEET 95
Query: 1650 TLFFQ---MHRQGMSADTSTLSCALS---SIRCVEQGVQLHCLAM*NGFYVYVYVGSSLT 1811
+ + ++ + D S LS ALS S R ++ GVQ HCLA+ GF VYVGS L
Sbjct: 96 SNMLETNFLNEEESIVDASALSHALSLCASSRSLKSGVQFHCLAIRTGFVGNVYVGSCLI 155
Query: 1812 SFYGKCGHLNEAYRVFEEILVKNVVSWTAIIAGFAQNWDVDMCLMLYYRMRCSASKPNDF 1991
SFY KCG L AYRVFEE+ VKNVVSWTAIIAGFAQ W VD CL LY RMR S KPND
Sbjct: 156 SFYSKCGELCHAYRVFEEMPVKNVVSWTAIIAGFAQEWLVDGCLELYSRMRNSTLKPNDL 215
Query: 1992 TFTSLLSVCMGSGSLGQGRSAHCQTIQMGFDTYVHIGNALISMYSKCGNVGEAFCIFECM 2171
TFT LLS C G GSLG+GRSAHCQTI+MGFD+YVH+ NALISMY KCGNV +A+ IFE M
Sbjct: 216 TFTCLLSTCTGGGSLGRGRSAHCQTIEMGFDSYVHVANALISMYCKCGNVEDAYYIFERM 275
Query: 2172 RKRDLVSWN 2198
+D+VSWN
Sbjct: 276 DGKDIVSWN 284
Score = 84.0 bits (206), Expect = 2e-13
Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 19/200 (9%)
Frame = +3
Query: 1608 MFDKMHERNNVCWGT----------------LFFQMHRQGMSADTSTLSCALSSIR---C 1730
+F++M +N V W L+ +M + + T +C LS+
Sbjct: 170 VFEEMPVKNVVSWTAIIAGFAQEWLVDGCLELYSRMRNSTLKPNDLTFTCLLSTCTGGGS 229
Query: 1731 VEQGVQLHCLAM*NGFYVYVYVGSSLTSFYGKCGHLNEAYRVFEEILVKNVVSWTAIIAG 1910
+ +G HC + GF YV+V ++L S Y KCG++ +AY +FE + K++VSW ++IAG
Sbjct: 230 LGRGRSAHCQTIEMGFDSYVHVANALISMYCKCGNVEDAYYIFERMDGKDIVSWNSMIAG 289
Query: 1911 FAQNWDVDMCLMLYYRMRCSASKPNDFTFTSLLSVCMGSGSLGQGRSAHCQTIQMGFDTY 2090
AQ+ + L+ M+ KP+ TF +LS C G + QG+ ++ G
Sbjct: 290 HAQHGLAVQAIDLFEEMKKQKLKPDAITFLGVLSSCRHVGLVKQGQFYFNSMVEHGVKPE 349
Query: 2091 VHIGNALISMYSKCGNVGEA 2150
+ ++ + + G + EA
Sbjct: 350 LDHFACVVDLLGRAGLLEEA 369
>emb|CBI32643.3| unnamed protein product [Vitis vinifera]
Length = 1400
Score = 235 bits (599), Expect = 4e-59
Identities = 132/249 (53%), Positives = 159/249 (63%), Gaps = 6/249 (2%)
Frame = +3
Query: 1470 KKYMFIYFITPNNNNKCTQQPQNHIRLI*SCMQELQQPTHLDTTPCMFDKMHERNNVCWG 1649
K+ + ++P + C + Q H+RLI L PT+ D N++
Sbjct: 902 KQLGILNLVSPTTD--CAENRQTHLRLI---QDFLPIPTNQFAQKRASDDFAHSNSLEET 956
Query: 1650 TLFFQ---MHRQGMSADTSTLSCALS---SIRCVEQGVQLHCLAM*NGFYVYVYVGSSLT 1811
+ + ++ + D S LS ALS S R ++ GVQ HCLA+ GF VYVGS L
Sbjct: 957 SNMLETNFLNEEESIVDASALSHALSLCASSRSLKSGVQFHCLAIRTGFVGNVYVGSCLI 1016
Query: 1812 SFYGKCGHLNEAYRVFEEILVKNVVSWTAIIAGFAQNWDVDMCLMLYYRMRCSASKPNDF 1991
SFY KCG L AYRVFEE+ VKNVVSWTAIIAGFAQ W VD CL LY RMR S KPND
Sbjct: 1017 SFYSKCGELCHAYRVFEEMPVKNVVSWTAIIAGFAQEWLVDGCLELYSRMRNSTLKPNDL 1076
Query: 1992 TFTSLLSVCMGSGSLGQGRSAHCQTIQMGFDTYVHIGNALISMYSKCGNVGEAFCIFECM 2171
TFT LLS C G GSLG+GRSAHCQTI+MGFD+YVH+ NALISMY KCGNV +A+ IFE M
Sbjct: 1077 TFTCLLSTCTGGGSLGRGRSAHCQTIEMGFDSYVHVANALISMYCKCGNVEDAYYIFERM 1136
Query: 2172 RKRDLVSWN 2198
+D+VSWN
Sbjct: 1137 DGKDIVSWN 1145
Score = 84.0 bits (206), Expect = 2e-13
Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 19/200 (9%)
Frame = +3
Query: 1608 MFDKMHERNNVCWGT----------------LFFQMHRQGMSADTSTLSCALSSIR---C 1730
+F++M +N V W L+ +M + + T +C LS+
Sbjct: 1031 VFEEMPVKNVVSWTAIIAGFAQEWLVDGCLELYSRMRNSTLKPNDLTFTCLLSTCTGGGS 1090
Query: 1731 VEQGVQLHCLAM*NGFYVYVYVGSSLTSFYGKCGHLNEAYRVFEEILVKNVVSWTAIIAG 1910
+ +G HC + GF YV+V ++L S Y KCG++ +AY +FE + K++VSW ++IAG
Sbjct: 1091 LGRGRSAHCQTIEMGFDSYVHVANALISMYCKCGNVEDAYYIFERMDGKDIVSWNSMIAG 1150
Query: 1911 FAQNWDVDMCLMLYYRMRCSASKPNDFTFTSLLSVCMGSGSLGQGRSAHCQTIQMGFDTY 2090
AQ+ + L+ M+ KP+ TF +LS C G + QG+ ++ G
Sbjct: 1151 HAQHGLAVQAIDLFEEMKKQKLKPDAITFLGVLSSCRHVGLVKQGQFYFNSMVEHGVKPE 1210
Query: 2091 VHIGNALISMYSKCGNVGEA 2150
+ ++ + + G + EA
Sbjct: 1211 LDHFACVVDLLGRAGLLEEA 1230
>ref|XP_002323442.1| predicted protein [Populus trichocarpa] gi|222868072|gb|EEF05203.1|
predicted protein [Populus trichocarpa]
Length = 526
Score = 231 bits (589), Expect = 6e-58
Identities = 114/176 (64%), Positives = 136/176 (77%), Gaps = 3/176 (1%)
Frame = +3
Query: 1680 MSADTSTLSCALSSI---RCVEQGVQLHCLAM*NGFYVYVYVGSSLTSFYGKCGHLNEAY 1850
+S D S LS A+SS R + G+Q HCLA+ GF Y+GSSL +FYGKCG L+ AY
Sbjct: 124 LSFDASVLSNAVSSCASTRDLRGGIQYHCLAISAGFIANAYIGSSLVTFYGKCGELDNAY 183
Query: 1851 RVFEEILVKNVVSWTAIIAGFAQNWDVDMCLMLYYRMRCSASKPNDFTFTSLLSVCMGSG 2030
+VF+E+ V+NVVSWTAII+GFAQ+W VDMCL LY MR S KPNDFTFTSLLS C GSG
Sbjct: 184 KVFKEMPVRNVVSWTAIISGFAQDWQVDMCLQLYCLMRNSTLKPNDFTFTSLLSACTGSG 243
Query: 2031 SLGQGRSAHCQTIQMGFDTYVHIGNALISMYSKCGNVGEAFCIFECMRKRDLVSWN 2198
+LGQGRSAHCQ I+MGF +Y+HI NAL+SMY KCGNV +AF IFE M +D+VSWN
Sbjct: 244 ALGQGRSAHCQIIEMGFVSYLHIANALVSMYCKCGNVEDAFHIFENMVGKDIVSWN 299
Score = 90.1 bits (222), Expect = 2e-15
Identities = 57/213 (26%), Positives = 101/213 (47%), Gaps = 19/213 (8%)
Frame = +3
Query: 1590 LDTTPCMFDKMHERNNVCWGT----------------LFFQMHRQGMSADTSTLSCALSS 1721
LD +F +M RN V W L+ M + + T + LS+
Sbjct: 179 LDNAYKVFKEMPVRNVVSWTAIISGFAQDWQVDMCLQLYCLMRNSTLKPNDFTFTSLLSA 238
Query: 1722 IR---CVEQGVQLHCLAM*NGFYVYVYVGSSLTSFYGKCGHLNEAYRVFEEILVKNVVSW 1892
+ QG HC + GF Y+++ ++L S Y KCG++ +A+ +FE ++ K++VSW
Sbjct: 239 CTGSGALGQGRSAHCQIIEMGFVSYLHIANALVSMYCKCGNVEDAFHIFENMVGKDIVSW 298
Query: 1893 TAIIAGFAQNWDVDMCLMLYYRMRCSASKPNDFTFTSLLSVCMGSGSLGQGRSAHCQTIQ 2072
++IAG+AQ+ + L+ RM+ KP+ TF +LS C +G + GR+ ++
Sbjct: 299 NSMIAGYAQHGLAVQGIGLFERMKSQGVKPDAITFLGVLSSCRHAGFVEGGRNYFNSMVE 358
Query: 2073 MGFDTYVHIGNALISMYSKCGNVGEAFCIFECM 2171
G + + ++ + + G + EA E M
Sbjct: 359 YGVKPELDHYSCIVDLLGRAGLLEEAQYFIERM 391
>ref|XP_003550640.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37320-like
[Glycine max]
Length = 501
Score = 213 bits (541), Expect = 2e-52
Identities = 109/178 (61%), Positives = 129/178 (72%), Gaps = 3/178 (1%)
Frame = +3
Query: 1674 QGMSADTSTLSCALSSI---RCVEQGVQLHCLAM*NGFYVYVYVGSSLTSFYGKCGHLNE 1844
QG D LS A+SS R + G+Q HCLA+ GF VYVGSSL S Y +C L +
Sbjct: 101 QGFGVDVFFLSQAVSSCGSKRDLWGGIQYHCLAITTGFVASVYVGSSLISLYSRCAFLGD 160
Query: 1845 AYRVFEEILVKNVVSWTAIIAGFAQNWDVDMCLMLYYRMRCSASKPNDFTFTSLLSVCMG 2024
A RVFEE+ V+NVVSWTAIIAGFAQ W VDMCL L+ +MR S +PN FT+TSLLS CMG
Sbjct: 161 ACRVFEEMPVRNVVSWTAIIAGFAQEWHVDMCLELFQQMRGSDLRPNYFTYTSLLSACMG 220
Query: 2025 SGSLGQGRSAHCQTIQMGFDTYVHIGNALISMYSKCGNVGEAFCIFECMRKRDLVSWN 2198
SG+LG GR AHCQ I+MGF +Y+HI NALISMYSKCG + +A IFE M RD+V+WN
Sbjct: 221 SGALGHGRCAHCQIIRMGFHSYLHIENALISMYSKCGAIDDALHIFENMVSRDVVTWN 278
Score = 75.5 bits (184), Expect = 6e-11
Identities = 50/201 (24%), Positives = 94/201 (46%), Gaps = 20/201 (9%)
Frame = +3
Query: 1608 MFDKMHERNNVCWGT----------------LFFQMHRQGMSAD----TSTLSCALSSIR 1727
+F++M RN V W LF QM + + TS LS + S
Sbjct: 164 VFEEMPVRNVVSWTAIIAGFAQEWHVDMCLELFQQMRGSDLRPNYFTYTSLLSACMGS-G 222
Query: 1728 CVEQGVQLHCLAM*NGFYVYVYVGSSLTSFYGKCGHLNEAYRVFEEILVKNVVSWTAIIA 1907
+ G HC + GF+ Y+++ ++L S Y KCG +++A +FE ++ ++VV+W +I+
Sbjct: 223 ALGHGRCAHCQIIRMGFHSYLHIENALISMYSKCGAIDDALHIFENMVSRDVVTWNTMIS 282
Query: 1908 GFAQNWDVDMCLMLYYRMRCSASKPNDFTFTSLLSVCMGSGSLGQGRSAHCQTIQMGFDT 2087
G+AQ+ + L+ M P+ T+ +LS C G + +G+ ++ G
Sbjct: 283 GYAQHGLAQEAINLFEEMIKQGVNPDAVTYLGVLSSCRHGGLVKEGQVYFNSMVEHGVQP 342
Query: 2088 YVHIGNALISMYSKCGNVGEA 2150
+ + ++ + + G + EA
Sbjct: 343 GLDHYSCIVDLLGRAGLLLEA 363
>ref|XP_003624377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499392|gb|AES80595.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 487
Score = 213 bits (541), Expect = 2e-52
Identities = 109/178 (61%), Positives = 128/178 (71%), Gaps = 3/178 (1%)
Frame = +3
Query: 1674 QGMSADTSTLSCALS---SIRCVEQGVQLHCLAM*NGFYVYVYVGSSLTSFYGKCGHLNE 1844
QG+ D LS ALS S R G+Q HCLA+ GF VYVGSSL S Y +CG L +
Sbjct: 102 QGLGIDVCFLSHALSLCGSKRDFYGGIQYHCLAIRIGFIANVYVGSSLISLYSRCGLLGD 161
Query: 1845 AYRVFEEILVKNVVSWTAIIAGFAQNWDVDMCLMLYYRMRCSASKPNDFTFTSLLSVCMG 2024
AYRVF+E+ V+NVVSWTAIIAGFAQ W VDMCL L+ RMR KPN FT+TSLLS CMG
Sbjct: 162 AYRVFDEMSVRNVVSWTAIIAGFAQEWRVDMCLELFRRMRGLELKPNYFTYTSLLSACMG 221
Query: 2025 SGSLGQGRSAHCQTIQMGFDTYVHIGNALISMYSKCGNVGEAFCIFECMRKRDLVSWN 2198
SG+LG GR HCQ IQMGF Y+H+ NALI+MYSKCG + +A IFE M +D+V+WN
Sbjct: 222 SGALGHGRGVHCQIIQMGFHCYLHVENALIAMYSKCGVIVDALYIFENMVSKDVVTWN 279
Score = 68.2 bits (165), Expect = 9e-09
Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 20/208 (9%)
Frame = +3
Query: 1608 MFDKMHERNNVCWGTL---FFQMHRQGMSAD-----------------TSTLSCALSSIR 1727
+FD+M RN V W + F Q R M + TS LS + S
Sbjct: 165 VFDEMSVRNVVSWTAIIAGFAQEWRVDMCLELFRRMRGLELKPNYFTYTSLLSACMGS-G 223
Query: 1728 CVEQGVQLHCLAM*NGFYVYVYVGSSLTSFYGKCGHLNEAYRVFEEILVKNVVSWTAIIA 1907
+ G +HC + GF+ Y++V ++L + Y KCG + +A +FE ++ K+VV+W ++I
Sbjct: 224 ALGHGRGVHCQIIQMGFHCYLHVENALIAMYSKCGVIVDALYIFENMVSKDVVTWNSMIV 283
Query: 1908 GFAQNWDVDMCLMLYYRMRCSASKPNDFTFTSLLSVCMGSGSLGQGRSAHCQTIQMGFDT 2087
G MR P+ TF +LS C G + +G+ + G
Sbjct: 284 G----------------MRIMGVNPDAVTFLGILSSCRHGGLVKEGQVYFSSMVDHGLQP 327
Query: 2088 YVHIGNALISMYSKCGNVGEAFCIFECM 2171
+ + ++ + + G + EA + M
Sbjct: 328 ELDHYSCIVDLLGRAGLLLEALDFIQNM 355