BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00026801
         (404 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containi...   174   7e-42
ref|XP_002515835.1| pentatricopeptide repeat-containing protein,...   172   3e-41
emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]   169   3e-40
ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containi...   168   5e-40
ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [S...   162   3e-38

>ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
           gi|449479088|ref|XP_004155501.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  174 bits (441), Expect = 7e-42
 Identities = 79/135 (58%), Positives = 109/135 (80%), Gaps = 2/135 (1%)
 Frame = -2

Query: 403 LSACAAVGAWLQGKETHAYVIRGVINREYGDRGEDLMVKNALIDMYAKCRNFNYGRTIFE 224
           LS CA+VGA L GK+THAYVI+ ++N  + D+ +DL+V N LIDMYAKC+++   R+IF+
Sbjct: 377 LSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFD 436

Query: 223 SISSKEKNVVTWTVLIGGCSQHGDANEALELFSKMLRGST--RPNAFTISCSLMACARLS 50
           SI  K+KNVVTWTV+IGG +QHG+AN+AL+LF+++ +  T  +PNAFT+SC+LMACARL 
Sbjct: 437 SIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLG 496

Query: 49  ALRSGKEIHAYVTRN 5
            LR G+++HAY  RN
Sbjct: 497 ELRLGRQLHAYALRN 511



 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 53/167 (31%), Positives = 77/167 (46%), Gaps = 34/167 (20%)
 Frame = -2

Query: 403 LSACAAVGAWLQGKETHAYVIR-GVINREYGDRGEDLMVKNALIDMYAKCRNFNYGRTIF 227
           L ACA+V A   GK+ H + +R G++        +D+ V NAL+ MYAKC   N    +F
Sbjct: 241 LPACASVFALQHGKQVHGFSVRNGLV--------DDVFVGNALVSMYAKCSKMNEANKVF 292

Query: 226 ESISSKEK---------------------------------NVVTWTVLIGGCSQHGDAN 146
           E I  K+                                  +V+TW+ +I G +Q G   
Sbjct: 293 EGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGF 352

Query: 145 EALELFSKMLRGSTRPNAFTISCSLMACARLSALRSGKEIHAYVTRN 5
           EAL++F +M      PN  T++  L  CA + AL  GK+ HAYV +N
Sbjct: 353 EALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKN 399



 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 43/123 (34%), Positives = 63/123 (51%)
 Frame = -2

Query: 403 LSACAAVGAWLQGKETHAYVIRGVINREYGDRGEDLMVKNALIDMYAKCRNFNYGRTIFE 224
           L ACA +G    G++ HAY +R        +  E L V N LIDMY+K  + +  R +F+
Sbjct: 489 LMACARLGELRLGRQLHAYALRNE------NESEVLYVGNCLIDMYSKSGDIDAARAVFD 542

Query: 223 SISSKEKNVVTWTVLIGGCSQHGDANEALELFSKMLRGSTRPNAFTISCSLMACARLSAL 44
           ++  K +NVV+WT L+ G   HG   EAL LF +M +     +  T    L AC+    +
Sbjct: 543 NM--KLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMV 600

Query: 43  RSG 35
             G
Sbjct: 601 DQG 603



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 35/137 (25%), Positives = 68/137 (49%), Gaps = 4/137 (2%)
 Frame = -2

Query: 403 LSACAAVGAWLQGKETHAYVIRGVINREYGDRGEDLMVKNALIDMYAKCRNFNYGRTIFE 224
           L AC  + +   G   HA V    +       G ++ + N+++ MY +C   +    +F+
Sbjct: 134 LKACGEIPSLRHGASVHAIVCANGL-------GSNVFICNSIVAMYGRCGALDDAHQMFD 186

Query: 223 SISSKE-KNVVTWTVLIGGCSQHGDANEALELFSKMLRGST---RPNAFTISCSLMACAR 56
            +  ++ +++V+W  ++    Q G +  AL +  +M    +   RP+A T+   L ACA 
Sbjct: 187 EVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACAS 246

Query: 55  LSALRSGKEIHAYVTRN 5
           + AL+ GK++H +  RN
Sbjct: 247 VFALQHGKQVHGFSVRN 263


>ref|XP_002515835.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223544990|gb|EEF46504.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 655

 Score =  172 bits (436), Expect = 3e-41
 Identities = 83/137 (60%), Positives = 109/137 (79%), Gaps = 3/137 (2%)
 Frame = -2

Query: 403 LSACAAVGAWLQGKETHAYVIRGVINREYGDRGEDLMVKNALIDMYAKCRNFNYGRTIFE 224
           LS CA+VGA L GKETH Y I+ V+N +  D  ++L+V NA+IDMY KC++ N GR IF 
Sbjct: 389 LSGCASVGALLHGKETHCYSIKCVLNFDRSDPRDELLVVNAIIDMYTKCKDINVGRAIFN 448

Query: 223 SISSKEKNVVTWTVLIGGCSQHGDANEALELFSKMLR---GSTRPNAFTISCSLMACARL 53
           SI  K++NVVTWT +IGG +QHG+AN+ALELFS+ML+    S +PNAFTISC+LMACARL
Sbjct: 449 SIPPKDRNVVTWTAMIGGYAQHGEANDALELFSQMLKQYNRSVKPNAFTISCALMACARL 508

Query: 52  SALRSGKEIHAYVTRNR 2
           +ALR G++IHA+V R++
Sbjct: 509 AALRFGRQIHAFVLRDQ 525



 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 53/162 (32%), Positives = 73/162 (45%), Gaps = 33/162 (20%)
 Frame = -2

Query: 403 LSACAAVGAWLQGKETHAYVIRGVINREYGDRGEDLMVKNALIDMYAKCRNFNYGRTIFE 224
           L ACA++G WL GK+ H + IR      YG   ED+ V N+L+DMYAKC        +F+
Sbjct: 253 LPACASMGDWLCGKQVHGFAIR------YG-LFEDVFVANSLVDMYAKCGLMCIANKVFD 305

Query: 223 SISSK---------------------------------EKNVVTWTVLIGGCSQHGDANE 143
            +  K                                 + +VV+W+ +I G +Q G   E
Sbjct: 306 RMQHKDVVSWNAMVTGYSQIGKFEDALGLFEKMREEKIQLDVVSWSAVIAGYAQRGLGYE 365

Query: 142 ALELFSKMLRGSTRPNAFTISCSLMACARLSALRSGKEIHAY 17
           AL +F +M     RPN  T+   L  CA + AL  GKE H Y
Sbjct: 366 ALNVFRQMQVCGLRPNEVTLVSLLSGCASVGALLHGKETHCY 407



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 40/123 (32%), Positives = 64/123 (52%)
 Frame = -2

Query: 403 LSACAAVGAWLQGKETHAYVIRGVINREYGDRGEDLMVKNALIDMYAKCRNFNYGRTIFE 224
           L ACA + A   G++ HA+V+R   + +       L V N LIDMY+K  + +  R +F+
Sbjct: 502 LMACARLAALRFGRQIHAFVLRDQYDCDV------LYVANCLIDMYSKSGDMDAARLVFD 555

Query: 223 SISSKEKNVVTWTVLIGGCSQHGDANEALELFSKMLRGSTRPNAFTISCSLMACARLSAL 44
           ++  K +N V+WT L+ G   HG   EA+++F +M R     +  T    L AC+    +
Sbjct: 556 NM--KHRNTVSWTSLMTGYGMHGHGEEAIKVFDEMRREGLVSDGITFLVVLYACSHSGMV 613

Query: 43  RSG 35
             G
Sbjct: 614 DEG 616



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 4/134 (2%)
 Frame = -2

Query: 397 ACAAVGAWLQGKETHAYVIRGVINREYGDRGEDLMVKNALIDMYAKCRNFNYGRTIFESI 218
           AC  + ++L G   HA V     +        ++ V NA++ MY +C   +Y R +F+ +
Sbjct: 148 ACGELPSFLHGSCIHAIVCSTGFD-------SNVFVCNAVVAMYGRCGASSYARQMFDEL 200

Query: 217 SSKEK-NVVTWTVLIGGCSQHGDANEALELFSKMLR---GSTRPNAFTISCSLMACARLS 50
              E  ++V+W  +I    Q GD    +ELF +M +       P+A ++   L ACA + 
Sbjct: 201 LMGEVFDLVSWNSMIAVYLQSGDLKSGIELFRRMWKVGEFDIVPDAVSLVNVLPACASMG 260

Query: 49  ALRSGKEIHAYVTR 8
               GK++H +  R
Sbjct: 261 DWLCGKQVHGFAIR 274


>emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  169 bits (427), Expect = 3e-40
 Identities = 83/136 (61%), Positives = 105/136 (77%), Gaps = 2/136 (1%)
 Frame = -2

Query: 403 LSACAAVGAWLQGKETHAYVIRGVINREYGDRGEDLMVKNALIDMYAKCRNFNYGRTIFE 224
           LS CA+ G  L GKETH + I+ ++N +  D G+DLMV NALIDMY+KC++    R +F+
Sbjct: 393 LSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFD 452

Query: 223 SISSKEKNVVTWTVLIGGCSQHGDANEALELFSKMLR--GSTRPNAFTISCSLMACARLS 50
            I  K+++VVTWTVLIGG +QHG+ANEALELFS+ML+      PNAFTISC+LMACARL 
Sbjct: 453 LIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLG 512

Query: 49  ALRSGKEIHAYVTRNR 2
           ALR G++IHAYV RNR
Sbjct: 513 ALRFGRQIHAYVLRNR 528



 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 54/165 (32%), Positives = 74/165 (44%), Gaps = 33/165 (20%)
 Frame = -2

Query: 403 LSACAAVGAWLQGKETHAYVIRGVINREYGDRGEDLMVKNALIDMYAKCRNFNYGRTIFE 224
           L ACA+VGAW +GK+ H Y +R  +        ED+ V NA++DMYAKC        +FE
Sbjct: 257 LPACASVGAWSRGKQVHGYALRSGL-------FEDVFVGNAVVDMYAKCGMMEEANKVFE 309

Query: 223 SISSK---------------------------------EKNVVTWTVLIGGCSQHGDANE 143
            +  K                                 E NVVTW+ +I G +Q G   E
Sbjct: 310 RMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFE 369

Query: 142 ALELFSKMLRGSTRPNAFTISCSLMACARLSALRSGKEIHAYVTR 8
           AL++F +ML   + PN  T+   L  CA    L  GKE H +  +
Sbjct: 370 ALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIK 414



 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 42/123 (34%), Positives = 64/123 (52%)
 Frame = -2

Query: 403 LSACAAVGAWLQGKETHAYVIRGVINREYGDRGEDLMVKNALIDMYAKCRNFNYGRTIFE 224
           L ACA +GA   G++ HAYV+R             L V N LIDMY+K  + +  R +F+
Sbjct: 505 LMACARLGALRFGRQIHAYVLRNRFESAM------LFVANCLIDMYSKSGDVDAARVVFD 558

Query: 223 SISSKEKNVVTWTVLIGGCSQHGDANEALELFSKMLRGSTRPNAFTISCSLMACARLSAL 44
           ++   ++N V+WT L+ G   HG   EAL++F +M +    P+  T    L AC+    +
Sbjct: 559 NMH--QRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMV 616

Query: 43  RSG 35
             G
Sbjct: 617 DQG 619



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 2/135 (1%)
 Frame = -2

Query: 403 LSACAAVGAWLQGKETHAYVIRGVINREYGDRGEDLMVKNALIDMYAKCRNFNYGRTIFE 224
           L AC  + ++  G   HA V              ++ V N L+ MY +C  +   R +F+
Sbjct: 152 LKACGEIPSFRCGASVHAVVFASGFEW-------NVFVGNGLVSMYGRCGAWENARQVFD 204

Query: 223 SISSKEK-NVVTWTVLIGGCSQHGDANEALELFSKMLRG-STRPNAFTISCSLMACARLS 50
            +  +   ++V+W  ++    Q GD+  A+++F +M      RP+A ++   L ACA + 
Sbjct: 205 EMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVG 264

Query: 49  ALRSGKEIHAYVTRN 5
           A   GK++H Y  R+
Sbjct: 265 AWSRGKQVHGYALRS 279


>ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  168 bits (425), Expect = 5e-40
 Identities = 83/136 (61%), Positives = 104/136 (76%), Gaps = 2/136 (1%)
 Frame = -2

Query: 403 LSACAAVGAWLQGKETHAYVIRGVINREYGDRGEDLMVKNALIDMYAKCRNFNYGRTIFE 224
           LS CA  G  L GKETH + I+ ++N +  D G+DLMV NALIDMY+KC++    R +F+
Sbjct: 374 LSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFD 433

Query: 223 SISSKEKNVVTWTVLIGGCSQHGDANEALELFSKMLR--GSTRPNAFTISCSLMACARLS 50
            I  K+++VVTWTVLIGG +QHG+ANEALELFS+ML+      PNAFTISC+LMACARL 
Sbjct: 434 LIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLG 493

Query: 49  ALRSGKEIHAYVTRNR 2
           ALR G++IHAYV RNR
Sbjct: 494 ALRFGRQIHAYVLRNR 509



 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 53/165 (32%), Positives = 73/165 (44%), Gaps = 33/165 (20%)
 Frame = -2

Query: 403 LSACAAVGAWLQGKETHAYVIRGVINREYGDRGEDLMVKNALIDMYAKCRNFNYGRTIFE 224
           L ACA+VGAW +GK+ H Y +R  +        ED+ V NA++DMYAKC        +FE
Sbjct: 238 LPACASVGAWSRGKQVHGYALRSGL-------FEDVFVGNAVVDMYAKCGMMEEANKVFE 290

Query: 223 SISSK---------------------------------EKNVVTWTVLIGGCSQHGDANE 143
            +  K                                 E NVVTW+ +I G +Q G   E
Sbjct: 291 RMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFE 350

Query: 142 ALELFSKMLRGSTRPNAFTISCSLMACARLSALRSGKEIHAYVTR 8
           AL++F +M    + PN  T+   L  CA    L  GKE H +  +
Sbjct: 351 ALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIK 395



 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 42/123 (34%), Positives = 64/123 (52%)
 Frame = -2

Query: 403 LSACAAVGAWLQGKETHAYVIRGVINREYGDRGEDLMVKNALIDMYAKCRNFNYGRTIFE 224
           L ACA +GA   G++ HAYV+R             L V N LIDMY+K  + +  R +F+
Sbjct: 486 LMACARLGALRFGRQIHAYVLRNRFESAM------LFVANCLIDMYSKSGDVDAARVVFD 539

Query: 223 SISSKEKNVVTWTVLIGGCSQHGDANEALELFSKMLRGSTRPNAFTISCSLMACARLSAL 44
           ++   ++N V+WT L+ G   HG   EAL++F +M +    P+  T    L AC+    +
Sbjct: 540 NMH--QRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMV 597

Query: 43  RSG 35
             G
Sbjct: 598 DQG 600



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 2/135 (1%)
 Frame = -2

Query: 403 LSACAAVGAWLQGKETHAYVIRGVINREYGDRGEDLMVKNALIDMYAKCRNFNYGRTIFE 224
           L AC  + ++  G   HA V              ++ V N L+ MY +C  +   R +F+
Sbjct: 133 LKACGEIPSFRCGASVHAVVFASGFEW-------NVFVGNGLVSMYGRCGAWENARQVFD 185

Query: 223 SISSKEK-NVVTWTVLIGGCSQHGDANEALELFSKMLRG-STRPNAFTISCSLMACARLS 50
            +  +   ++V+W  ++    Q GD+  A+++F +M      RP+A ++   L ACA + 
Sbjct: 186 EMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVG 245

Query: 49  ALRSGKEIHAYVTRN 5
           A   GK++H Y  R+
Sbjct: 246 AWSRGKQVHGYALRS 260


>ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
           gi|241944620|gb|EES17765.1| hypothetical protein
           SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  162 bits (409), Expect = 3e-38
 Identities = 83/140 (59%), Positives = 109/140 (77%), Gaps = 7/140 (5%)
 Frame = -2

Query: 403 LSACAAVGAWLQGKETHAYVIRGVI---NREYGDRG--EDLMVKNALIDMYAKCRNFNYG 239
           LSACA++GA  QG ETHAY ++  +   + ++G  G  EDL+V NALIDMY+KCR+F   
Sbjct: 402 LSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAA 461

Query: 238 RTIFESISSKEKNVVTWTVLIGGCSQHGDANEALELFSKMLRG--STRPNAFTISCSLMA 65
           RTIF SI  +E+NVVTWTV+IGG +Q+GD+N+AL+LFS+M+    +  PNA+TISC LMA
Sbjct: 462 RTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMA 521

Query: 64  CARLSALRSGKEIHAYVTRN 5
           CA LS+LR GK+IHAYVTR+
Sbjct: 522 CAHLSSLRMGKQIHAYVTRH 541



 Score = 77.8 bits (190), Expect = 9e-13
 Identities = 56/162 (34%), Positives = 73/162 (45%), Gaps = 33/162 (20%)
 Frame = -2

Query: 403 LSACAAVGAWLQGKETHAYVIRGVINREYGDRGEDLMVKNALIDMYAKCRNFNYGRTIFE 224
           L ACA++ A  Q KE H+Y IR   N  + D      V NALID YAKC +      +F 
Sbjct: 266 LPACASLKALPQTKEIHSYAIR---NGTFADA----FVCNALIDTYAKCGSMKDAVNVFN 318

Query: 223 SISSKE------------------------KN---------VVTWTVLIGGCSQHGDANE 143
            +  K+                        KN         V+TW+ +I G +Q G   E
Sbjct: 319 VMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQE 378

Query: 142 ALELFSKMLRGSTRPNAFTISCSLMACARLSALRSGKEIHAY 17
           AL+ F +M+   + PN+ TI   L ACA L AL  G E HAY
Sbjct: 379 ALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAY 420



 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 43/123 (34%), Positives = 65/123 (52%)
 Frame = -2

Query: 403 LSACAAVGAWLQGKETHAYVIRGVINREYGDRGEDLMVKNALIDMYAKCRNFNYGRTIFE 224
           L ACA + +   GK+ HAYV R   + EY        V N LIDMY+KC + +  R +F+
Sbjct: 519 LMACAHLSSLRMGKQIHAYVTR---HHEY--ESSVYFVANCLIDMYSKCGDVDTARNVFD 573

Query: 223 SISSKEKNVVTWTVLIGGCSQHGDANEALELFSKMLRGSTRPNAFTISCSLMACARLSAL 44
           S+   ++N V+WT ++ G   HG   EAL++F KM +    P+  +    L AC+    +
Sbjct: 574 SMP--KRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMV 631

Query: 43  RSG 35
             G
Sbjct: 632 DQG 634