BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00026634
         (335 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAE52834.1| RNA polymerase [Hordeum vulgare]                       92   6e-17
ref|XP_002528405.1| DNA-directed RNA polymerase 3B, chloroplast ...    91   1e-16
dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa...    89   5e-16
ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group] g...    89   5e-16
ref|XP_003577161.1| PREDICTED: DNA-directed RNA polymerase 2, ch...    89   5e-16

>emb|CAE52834.1| RNA polymerase [Hordeum vulgare]
          Length = 862

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 45/102 (44%), Positives = 72/102 (70%), Gaps = 2/102 (1%)
 Frame = +3

Query: 3   AVHIGEAIENEVRIHSFLERTKKFRSRKTIEV--DGDDSLSKKQEILRKNVKNLIKRQRL 176
           A  IGEA+E+EVRIH FLE+TKK  +++  +V   GD  ++K+Q++LRK V +L+K+Q++
Sbjct: 135 ACQIGEAVEHEVRIHKFLEKTKKKNTKEVDKVVEPGDSDIAKEQQLLRKKVTDLMKKQKI 194

Query: 177 KEVQRLVKSEDGTKSWGRDAQAKVFEFQGYVCMGSLIFQIFL 302
           ++V+ LVK +D T+ WG+DA AKV         GS + ++F+
Sbjct: 195 RQVRHLVKKQDSTRPWGQDAHAKV---------GSRLIELFI 227


>ref|XP_002528405.1| DNA-directed RNA polymerase 3B, chloroplast precursor, putative
           [Ricinus communis] gi|223532193|gb|EEF33998.1|
           DNA-directed RNA polymerase 3B, chloroplast precursor,
           putative [Ricinus communis]
          Length = 1000

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 48/82 (58%), Positives = 64/82 (78%)
 Frame = +3

Query: 3   AVHIGEAIENEVRIHSFLERTKKFRSRKTIEVDGDDSLSKKQEILRKNVKNLIKRQRLKE 182
           AV IG AIE EVRIH+FLE+TK ++ +KTI     +SL K++EILRK V +LI+R++L E
Sbjct: 261 AVQIGMAIEQEVRIHNFLEKTKNYQRKKTIS-GAQESLGKEKEILRKRVNSLIRRKKLIE 319

Query: 183 VQRLVKSEDGTKSWGRDAQAKV 248
           VQ+LVK+E+  K WGRD QAK+
Sbjct: 320 VQKLVKNEE-MKPWGRDTQAKL 340


>dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa Japonica Group]
           gi|48716846|dbj|BAD23544.1| putative phage-type RNA
           polymerase [Oryza sativa Japonica Group]
           gi|215694941|dbj|BAG90132.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 951

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 45/85 (52%), Positives = 64/85 (75%), Gaps = 3/85 (3%)
 Frame = +3

Query: 3   AVHIGEAIENEVRIHSFLERTKKFRSRKTI---EVDGDDSLSKKQEILRKNVKNLIKRQR 173
           A  IGEAIE+EVRIH FLE+TKK +S K +   E  GD  ++K+QE LRK V +L+K+Q+
Sbjct: 288 ACQIGEAIEHEVRIHKFLEKTKK-KSNKEMDNEEEGGDSDIAKEQERLRKKVTDLMKKQK 346

Query: 174 LKEVQRLVKSEDGTKSWGRDAQAKV 248
           +++V+ +VK +D +K WG+DA AKV
Sbjct: 347 IRQVRNIVKKQDNSKPWGQDAHAKV 371


>ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group]
           gi|30698494|dbj|BAC76604.1| RpoT1 [Oryza sativa Japonica
           Group] gi|37360973|dbj|BAC98395.1| T7 bacteriophage-type
           single subunit RNA polymerase [Oryza sativa Japonica
           Group] gi|113630892|dbj|BAF24573.1| Os09g0246200 [Oryza
           sativa Japonica Group]
          Length = 1017

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 45/85 (52%), Positives = 64/85 (75%), Gaps = 3/85 (3%)
 Frame = +3

Query: 3   AVHIGEAIENEVRIHSFLERTKKFRSRKTI---EVDGDDSLSKKQEILRKNVKNLIKRQR 173
           A  IGEAIE+EVRIH FLE+TKK +S K +   E  GD  ++K+QE LRK V +L+K+Q+
Sbjct: 288 ACQIGEAIEHEVRIHKFLEKTKK-KSNKEMDNEEEGGDSDIAKEQERLRKKVTDLMKKQK 346

Query: 174 LKEVQRLVKSEDGTKSWGRDAQAKV 248
           +++V+ +VK +D +K WG+DA AKV
Sbjct: 347 IRQVRNIVKKQDNSKPWGQDAHAKV 371


>ref|XP_003577161.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial-like [Brachypodium
           distachyon]
          Length = 992

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 45/87 (51%), Positives = 64/87 (73%), Gaps = 5/87 (5%)
 Frame = +3

Query: 3   AVHIGEAIENEVRIHSFLERTKKFRSRKTIEVD-----GDDSLSKKQEILRKNVKNLIKR 167
           A  IGEAIE+EVRIH FLE+TKK   + T EVD     GD  ++K+Q+ LRK V +L+K+
Sbjct: 263 ACQIGEAIEHEVRIHKFLEKTKK---KNTKEVDNVVEAGDSDIAKEQQRLRKKVTDLMKK 319

Query: 168 QRLKEVQRLVKSEDGTKSWGRDAQAKV 248
           Q++++V+ +VK +D T+ WG+DA AKV
Sbjct: 320 QKIRQVRNIVKKQDSTRPWGQDAHAKV 346