BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00026232
         (509 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003536980.1| PREDICTED: pentatricopeptide repeat-containi...   279   1e-73
ref|XP_002273172.1| PREDICTED: pentatricopeptide repeat-containi...   275   4e-72
emb|CBI32614.3| unnamed protein product [Vitis vinifera]              271   3e-71
ref|XP_002322855.1| predicted protein [Populus trichocarpa] gi|2...   270   7e-71
ref|XP_002525184.1| pentatricopeptide repeat-containing protein,...   267   6e-70

>ref|XP_003536980.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
           chloroplastic-like [Glycine max]
          Length = 716

 Score =  279 bits (714), Expect = 1e-73
 Identities = 131/167 (78%), Positives = 155/167 (92%)
 Frame = +1

Query: 1   QQVNVEKAKELIKEMENDAGIEPDVVSYNIVIDGCILIDDSAGALAYFNEMRARGIAPSK 180
           +Q+ ++KA+EL+KEM +DAGI+PDVVSYNI+IDGCIL+DDSAGAL++FNEMRARGIAP+K
Sbjct: 432 KQLQIDKARELLKEMVDDAGIQPDVVSYNILIDGCILVDDSAGALSFFNEMRARGIAPTK 491

Query: 181 VSYTTLMKAFALTGQPKLVNNVFDEMRKDPRVKVDLVAWNMLVEGYCRQGLVEEAKKVIQ 360
           +SYTTLMKAFA +GQPKL + VF+EM  DPRVKVDL+AWNMLVEGYCR GLVEEAKKV+Q
Sbjct: 492 ISYTTLMKAFAYSGQPKLAHRVFNEMDSDPRVKVDLIAWNMLVEGYCRLGLVEEAKKVVQ 551

Query: 361 QMREDGFHPDVATYGSLANGIALARKPGEALLLWNEIKERLKGGEEG 501
           +M+E GFHPDV TYGSLANGIALARKPGEALLLWNE+KER + G+EG
Sbjct: 552 KMKESGFHPDVGTYGSLANGIALARKPGEALLLWNEVKERCEVGKEG 598



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 38/160 (23%), Positives = 72/160 (45%), Gaps = 5/160 (3%)
 Frame = +1

Query: 7   VNVEKAKELIKEME-----NDAGIEPDVVSYNIVIDGCILIDDSAGALAYFNEMRARGIA 171
           +N  +  + ++ +E     +D G +PD VSY  V+   + +     A     EM   G+ 
Sbjct: 358 MNAGRVSDTVRMLEAMRRLDDKGSQPDHVSYTTVVSALVKVGAMDRARQVLAEMTRIGVP 417

Query: 172 PSKVSYTTLMKAFALTGQPKLVNNVFDEMRKDPRVKVDLVAWNMLVEGYCRQGLVEEAKK 351
            + ++Y  L+K +    Q      +  EM  D  ++ D+V++N+L++G         A  
Sbjct: 418 ANLITYNVLLKGYCKQLQIDKARELLKEMVDDAGIQPDVVSYNILIDGCILVDDSAGALS 477

Query: 352 VIQQMREDGFHPDVATYGSLANGIALARKPGEALLLWNEI 471
              +MR  G  P   +Y +L    A + +P  A  ++NE+
Sbjct: 478 FFNEMRARGIAPTKISYTTLMKAFAYSGQPKLAHRVFNEM 517


>ref|XP_002273172.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
           chloroplastic-like [Vitis vinifera]
          Length = 749

 Score =  275 bits (702), Expect = 4e-72
 Identities = 132/167 (79%), Positives = 152/167 (91%)
 Frame = +1

Query: 1   QQVNVEKAKELIKEMENDAGIEPDVVSYNIVIDGCILIDDSAGALAYFNEMRARGIAPSK 180
           +Q+ ++KAKEL++EM +D GI PDVVSYN +IDGCIL+DDSAGALAYFNEMRARGIAP+K
Sbjct: 466 EQLQIDKAKELVREMVDDEGIVPDVVSYNTLIDGCILVDDSAGALAYFNEMRARGIAPTK 525

Query: 181 VSYTTLMKAFALTGQPKLVNNVFDEMRKDPRVKVDLVAWNMLVEGYCRQGLVEEAKKVIQ 360
           +SYTTLMKAFAL+GQPKL N VFDEM +DPRVKVDLVAWNMLVE +CR GLVEEAKK +Q
Sbjct: 526 ISYTTLMKAFALSGQPKLANKVFDEMLRDPRVKVDLVAWNMLVEAHCRLGLVEEAKKTVQ 585

Query: 361 QMREDGFHPDVATYGSLANGIALARKPGEALLLWNEIKERLKGGEEG 501
           +MRE+GF+P+VATYGSLANGIALARKPGEALLLWNE+KER    EEG
Sbjct: 586 RMRENGFYPNVATYGSLANGIALARKPGEALLLWNEVKERCVVKEEG 632


>emb|CBI32614.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  271 bits (694), Expect = 3e-71
 Identities = 129/160 (80%), Positives = 149/160 (93%)
 Frame = +1

Query: 1   QQVNVEKAKELIKEMENDAGIEPDVVSYNIVIDGCILIDDSAGALAYFNEMRARGIAPSK 180
           +Q+ ++KAKEL++EM +D GI PDVVSYN +IDGCIL+DDSAGALAYFNEMRARGIAP+K
Sbjct: 446 EQLQIDKAKELVREMVDDEGIVPDVVSYNTLIDGCILVDDSAGALAYFNEMRARGIAPTK 505

Query: 181 VSYTTLMKAFALTGQPKLVNNVFDEMRKDPRVKVDLVAWNMLVEGYCRQGLVEEAKKVIQ 360
           +SYTTLMKAFAL+GQPKL N VFDEM +DPRVKVDLVAWNMLVE +CR GLVEEAKK +Q
Sbjct: 506 ISYTTLMKAFALSGQPKLANKVFDEMLRDPRVKVDLVAWNMLVEAHCRLGLVEEAKKTVQ 565

Query: 361 QMREDGFHPDVATYGSLANGIALARKPGEALLLWNEIKER 480
           +MRE+GF+P+VATYGSLANGIALARKPGEALLLWNE+KER
Sbjct: 566 RMRENGFYPNVATYGSLANGIALARKPGEALLLWNEVKER 605


>ref|XP_002322855.1| predicted protein [Populus trichocarpa] gi|222867485|gb|EEF04616.1|
           predicted protein [Populus trichocarpa]
          Length = 751

 Score =  270 bits (691), Expect = 7e-71
 Identities = 129/167 (77%), Positives = 149/167 (89%)
 Frame = +1

Query: 1   QQVNVEKAKELIKEMENDAGIEPDVVSYNIVIDGCILIDDSAGALAYFNEMRARGIAPSK 180
           QQ+ ++KAKEL+KEM +D  IEPDVVSYN +IDGCIL+DDSAGALA+FNEMR +GI P+K
Sbjct: 472 QQLQIDKAKELLKEMADDVNIEPDVVSYNTLIDGCILVDDSAGALAFFNEMRTKGIMPTK 531

Query: 181 VSYTTLMKAFALTGQPKLVNNVFDEMRKDPRVKVDLVAWNMLVEGYCRQGLVEEAKKVIQ 360
           +SYTTLMKAFAL+GQPKL N VFDEM KDPRVK DLVAWNML+EGYCR GLV+EAK VIQ
Sbjct: 532 ISYTTLMKAFALSGQPKLANKVFDEMLKDPRVKADLVAWNMLLEGYCRLGLVDEAKTVIQ 591

Query: 361 QMREDGFHPDVATYGSLANGIALARKPGEALLLWNEIKERLKGGEEG 501
           +M+E+GFHPDVATYGSLANGI+LARKPGEALLLW E+KER +   EG
Sbjct: 592 RMKENGFHPDVATYGSLANGISLARKPGEALLLWKEVKERWEVKGEG 638



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
 Frame = +1

Query: 172 PSKVSYTTLMKAFALTGQPKLVNNVFDEMRKDPRVKVDLVAWNMLVEGYCRQGLVEEAKK 351
           P  ++YTT++ A    G       V  EM +   V  + + +N+L++GYC+Q  +++AK+
Sbjct: 423 PDHITYTTVISALVKAGSMDPARQVLAEMTRIG-VPANRITYNILLKGYCQQLQIDKAKE 481

Query: 352 VIQQMRED-GFHPDVATYGSLANGIALARKPGEALLLWNEIKER 480
           ++++M +D    PDV +Y +L +G  L      AL  +NE++ +
Sbjct: 482 LLKEMADDVNIEPDVVSYNTLIDGCILVDDSAGALAFFNEMRTK 525


>ref|XP_002525184.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535481|gb|EEF37150.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 740

 Score =  267 bits (683), Expect = 6e-70
 Identities = 125/167 (74%), Positives = 153/167 (91%)
 Frame = +1

Query: 1   QQVNVEKAKELIKEMENDAGIEPDVVSYNIVIDGCILIDDSAGALAYFNEMRARGIAPSK 180
           Q + ++KAKEL+KEM+ +A IEPDVVSYN +IDGCI +DDSAGALA+FNEMR +GIAP+K
Sbjct: 462 QHLQIDKAKELLKEMDENAEIEPDVVSYNTMIDGCIQVDDSAGALAFFNEMREKGIAPTK 521

Query: 181 VSYTTLMKAFALTGQPKLVNNVFDEMRKDPRVKVDLVAWNMLVEGYCRQGLVEEAKKVIQ 360
           +SYTTLMKAF+L+GQPKL N VFDEM KDPRVKVDL+AWN+LVE YC+ GLVE+AKK+IQ
Sbjct: 522 ISYTTLMKAFSLSGQPKLANQVFDEMFKDPRVKVDLIAWNVLVEAYCKLGLVEQAKKIIQ 581

Query: 361 QMREDGFHPDVATYGSLANGIALARKPGEALLLWNEIKERLKGGEEG 501
           +M+E+GFHP+VATYGSLA+GIALARKPGEAL+LWNE+KERL+  +EG
Sbjct: 582 RMKENGFHPNVATYGSLASGIALARKPGEALILWNEVKERLEMQKEG 628



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 34/142 (23%), Positives = 65/142 (45%)
 Frame = +1

Query: 46  ENDAGIEPDVVSYNIVIDGCILIDDSAGALAYFNEMRARGIAPSKVSYTTLMKAFALTGQ 225
           ++D    PD VSY  VI   +       A     EM   G+  ++++Y  L+K      Q
Sbjct: 406 QDDNASHPDHVSYTTVISALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGHCQHLQ 465

Query: 226 PKLVNNVFDEMRKDPRVKVDLVAWNMLVEGYCRQGLVEEAKKVIQQMREDGFHPDVATYG 405
                 +  EM ++  ++ D+V++N +++G  +      A     +MRE G  P   +Y 
Sbjct: 466 IDKAKELLKEMDENAEIEPDVVSYNTMIDGCIQVDDSAGALAFFNEMREKGIAPTKISYT 525

Query: 406 SLANGIALARKPGEALLLWNEI 471
           +L    +L+ +P  A  +++E+
Sbjct: 526 TLMKAFSLSGQPKLANQVFDEM 547