BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00025986
         (475 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...   193   1e-47
ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat...   193   1e-47
ref|XP_002883423.1| pentatricopeptide repeat-containing protein ...   193   1e-47
ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat...   192   2e-47
emb|CBI31172.3| unnamed protein product [Vitis vinifera]              192   2e-47

>ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  193 bits (490), Expect = 1e-47
 Identities = 102/173 (58%), Positives = 127/173 (73%), Gaps = 15/173 (8%)
 Frame = -1

Query: 475 TSLALFHNSLLSFVQMRNQGKYPDHNTFPSVLKSSTSLMDFKLGESIHGLVIQLGMDFDL 296
           TS  L H SL SF+ M   G YPDHN FPSVLKS   LMD  LGES+HG +I++G+DFDL
Sbjct: 82  TSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDL 141

Query: 295 YTGNALMNMYCKLQ-----GKEVSNGG---------TKS-RFSNVVSMESVKKVFDTMPQ 161
           YTGNALMNMY KL+     G++    G         T+S R  +V+S +SV+K+F+ MP+
Sbjct: 142 YTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPE 201

Query: 160 RDIVSWNTIVAGNARNGMYEEALVMVREMGMADLKPDAFTLSSVLPIFAEYVD 2
           +D+VSWNTI+AGNARNG+YEE L M+REMG A+LKPD+FTLSSVLP+ AE VD
Sbjct: 202 KDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVD 254



 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 47/150 (31%), Positives = 77/150 (51%)
 Frame = -1

Query: 463 LFHNSLLSFVQMRNQGKYPDHNTFPSVLKSSTSLMDFKLGESIHGLVIQLGMDFDLYTGN 284
           L+  +L    +M      PD  T  SVL      +D   G+ IHG  I+ G+D D+Y  +
Sbjct: 219 LYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVAS 278

Query: 283 ALMNMYCKLQGKEVSNGGTKSRFSNVVSMESVKKVFDTMPQRDIVSWNTIVAGNARNGMY 104
           +L++MY K                    +    +VF  + +RD +SWN+I+AG  +NG++
Sbjct: 279 SLIDMYAKC-----------------TRVADSCRVFTLLTERDGISWNSIIAGCVQNGLF 321

Query: 103 EEALVMVREMGMADLKPDAFTLSSVLPIFA 14
           +E L   R+M MA +KP +++ SS++P  A
Sbjct: 322 DEGLRFFRQMLMAKIKPKSYSFSSIMPACA 351



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 38/146 (26%), Positives = 69/146 (47%)
 Frame = -1

Query: 463 LFHNSLLSFVQMRNQGKYPDHNTFPSVLKSSTSLMDFKLGESIHGLVIQLGMDFDLYTGN 284
           LF   L  F QM      P   +F S++ +   L    LG+ +HG + + G D +++  +
Sbjct: 320 LFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIAS 379

Query: 283 ALMNMYCKLQGKEVSNGGTKSRFSNVVSMESVKKVFDTMPQRDIVSWNTIVAGNARNGMY 104
           +L++MY K                   ++ + K++FD M  RD+VSW  ++ G A +G  
Sbjct: 380 SLVDMYAKCG-----------------NIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQA 422

Query: 103 EEALVMVREMGMADLKPDAFTLSSVL 26
            +A+ +  +M    +KP+     +VL
Sbjct: 423 PDAIELFEQMETEGIKPNHVAFMAVL 448


>ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  193 bits (490), Expect = 1e-47
 Identities = 102/173 (58%), Positives = 127/173 (73%), Gaps = 15/173 (8%)
 Frame = -1

Query: 475 TSLALFHNSLLSFVQMRNQGKYPDHNTFPSVLKSSTSLMDFKLGESIHGLVIQLGMDFDL 296
           TS  L H SL SF+ M   G YPDHN FPSVLKS   LMD  LGES+HG +I++G+DFDL
Sbjct: 82  TSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDL 141

Query: 295 YTGNALMNMYCKLQ-----GKEVSNGG---------TKS-RFSNVVSMESVKKVFDTMPQ 161
           YTGNALMNMY KL+     G++    G         T+S R  +V+S +SV+K+F+ MP+
Sbjct: 142 YTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPE 201

Query: 160 RDIVSWNTIVAGNARNGMYEEALVMVREMGMADLKPDAFTLSSVLPIFAEYVD 2
           +D+VSWNTI+AGNARNG+YEE L M+REMG A+LKPD+FTLSSVLP+ AE VD
Sbjct: 202 KDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVD 254



 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 47/150 (31%), Positives = 77/150 (51%)
 Frame = -1

Query: 463 LFHNSLLSFVQMRNQGKYPDHNTFPSVLKSSTSLMDFKLGESIHGLVIQLGMDFDLYTGN 284
           L+  +L    +M      PD  T  SVL      +D   G+ IHG  I+ G+D D+Y  +
Sbjct: 219 LYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVAS 278

Query: 283 ALMNMYCKLQGKEVSNGGTKSRFSNVVSMESVKKVFDTMPQRDIVSWNTIVAGNARNGMY 104
           +L++MY K                    +    +VF  + +RD +SWN+I+AG  +NG++
Sbjct: 279 SLIDMYAKC-----------------TRVADSCRVFTLLTERDGISWNSIIAGCVQNGLF 321

Query: 103 EEALVMVREMGMADLKPDAFTLSSVLPIFA 14
           +E L   R+M MA +KP +++ SS++P  A
Sbjct: 322 DEGLRFFRQMLMAKIKPKSYSFSSIMPACA 351



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 35/136 (25%), Positives = 64/136 (47%)
 Frame = -1

Query: 463 LFHNSLLSFVQMRNQGKYPDHNTFPSVLKSSTSLMDFKLGESIHGLVIQLGMDFDLYTGN 284
           LF   L  F QM      P   +F S++ +   L    LG+ +HG + + G D +++  +
Sbjct: 320 LFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIAS 379

Query: 283 ALMNMYCKLQGKEVSNGGTKSRFSNVVSMESVKKVFDTMPQRDIVSWNTIVAGNARNGMY 104
           +L++MY K                   ++ + K++FD M  RD+VSW  ++ G A +G  
Sbjct: 380 SLVDMYAKCG-----------------NIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQA 422

Query: 103 EEALVMVREMGMADLK 56
            +A+ +  +M    +K
Sbjct: 423 PDAIELFEQMETEGIK 438


>ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297329263|gb|EFH59682.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 679

 Score =  193 bits (490), Expect = 1e-47
 Identities = 95/158 (60%), Positives = 120/158 (75%)
 Frame = -1

Query: 475 TSLALFHNSLLSFVQMRNQGKYPDHNTFPSVLKSSTSLMDFKLGESIHGLVIQLGMDFDL 296
           T  +LF  +L SFV+MR  G+ PDHN FPSVLKS T +MD + GES+HG +++LGMD DL
Sbjct: 81  TDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDL 140

Query: 295 YTGNALMNMYCKLQGKEVSNGGTKSRFSNVVSMESVKKVFDTMPQRDIVSWNTIVAGNAR 116
           YTGNALMNMY KL G                 ++SV+KVF+ MP++D+VS+NT++AG A+
Sbjct: 141 YTGNALMNMYSKLLG-----------------IDSVRKVFELMPRKDVVSYNTVIAGYAQ 183

Query: 115 NGMYEEALVMVREMGMADLKPDAFTLSSVLPIFAEYVD 2
           +GMYE+AL MVREMG +DLKPDAFTLSSVLPIF+EYVD
Sbjct: 184 SGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVD 221



 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 51/150 (34%), Positives = 80/150 (53%)
 Frame = -1

Query: 463 LFHNSLLSFVQMRNQGKYPDHNTFPSVLKSSTSLMDFKLGESIHGLVIQLGMDFDLYTGN 284
           ++ ++L    +M      PD  T  SVL   +  +D   G+ IHG VI+ G+D D+Y G+
Sbjct: 186 MYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGS 245

Query: 283 ALMNMYCKLQGKEVSNGGTKSRFSNVVSMESVKKVFDTMPQRDIVSWNTIVAGNARNGMY 104
           +L++MY K                    +E  ++VF  + +RD +SWN++VAG  +NG Y
Sbjct: 246 SLVDMYAKS-----------------ARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRY 288

Query: 103 EEALVMVREMGMADLKPDAFTLSSVLPIFA 14
            EAL + R+M  A ++P A   SSV+P  A
Sbjct: 289 NEALRLFRQMVSAKVRPGAVAFSSVIPACA 318



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 40/145 (27%), Positives = 70/145 (48%)
 Frame = -1

Query: 460 FHNSLLSFVQMRNQGKYPDHNTFPSVLKSSTSLMDFKLGESIHGLVIQLGMDFDLYTGNA 281
           ++ +L  F QM +    P    F SV+ +   L    LG+ +HG V++ G   +++  +A
Sbjct: 288 YNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASA 347

Query: 280 LMNMYCKLQGKEVSNGGTKSRFSNVVSMESVKKVFDTMPQRDIVSWNTIVAGNARNGMYE 101
           L++MY K                   ++++ +K+FD M   D VSW  I+ G+A +G   
Sbjct: 348 LVDMYSKCG-----------------NIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGH 390

Query: 100 EALVMVREMGMADLKPDAFTLSSVL 26
           EA+ +  EM    +KP+     +VL
Sbjct: 391 EAVSLFEEMKRQGVKPNQVAFVAVL 415


>ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  192 bits (489), Expect = 2e-47
 Identities = 101/170 (59%), Positives = 125/170 (73%), Gaps = 12/170 (7%)
 Frame = -1

Query: 475 TSLALFHNSLLSFVQMRNQGKYPDHNTFPSVLKSSTSLMDFKLGESIHGLVIQLGMDFDL 296
           TS  LF +SL  F+QM   GKYPDHN FPSVLKS T + D + GES+HG +I+LGM FDL
Sbjct: 82  TSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDL 141

Query: 295 YTGNALMNMYCKLQGKEVSNGGTK----SRFSNVVSME--------SVKKVFDTMPQRDI 152
           YT NALMNMY K    E  N   K     + S+V S +        S++KVF+ MP+RDI
Sbjct: 142 YTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDI 201

Query: 151 VSWNTIVAGNARNGMYEEALVMVREMGMADLKPDAFTLSSVLPIFAEYVD 2
           VSWNT+++GNA+NGM+E+AL+MVREMG ADL+PD+FTLSSVLPIFAEYV+
Sbjct: 202 VSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVN 251



 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 46/150 (30%), Positives = 79/150 (52%)
 Frame = -1

Query: 463 LFHNSLLSFVQMRNQGKYPDHNTFPSVLKSSTSLMDFKLGESIHGLVIQLGMDFDLYTGN 284
           +  ++L+   +M N    PD  T  SVL      ++   G+ IHG  I+ G D D++ G+
Sbjct: 216 MHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGS 275

Query: 283 ALMNMYCKLQGKEVSNGGTKSRFSNVVSMESVKKVFDTMPQRDIVSWNTIVAGNARNGMY 104
           +L++MY K                    ++   +VF  +PQ D +SWN+I+AG  +NGM+
Sbjct: 276 SLIDMYAKC-----------------TRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMF 318

Query: 103 EEALVMVREMGMADLKPDAFTLSSVLPIFA 14
           +E L   ++M +A +KP+  + SS++P  A
Sbjct: 319 DEGLKFFQQMLIAKIKPNHVSFSSIMPACA 348



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 37/146 (25%), Positives = 70/146 (47%)
 Frame = -1

Query: 463 LFHNSLLSFVQMRNQGKYPDHNTFPSVLKSSTSLMDFKLGESIHGLVIQLGMDFDLYTGN 284
           +F   L  F QM      P+H +F S++ +   L    LG+ +HG +I+   D +++  +
Sbjct: 317 MFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIAS 376

Query: 283 ALMNMYCKLQGKEVSNGGTKSRFSNVVSMESVKKVFDTMPQRDIVSWNTIVAGNARNGMY 104
           AL++MY K                   ++ + + +FD M   D+VSW  ++ G A +G  
Sbjct: 377 ALVDMYAKCG-----------------NIRTARWIFDKMELYDMVSWTAMIMGYALHGHA 419

Query: 103 EEALVMVREMGMADLKPDAFTLSSVL 26
            +A+ + + M +  +KP+     +VL
Sbjct: 420 YDAISLFKRMEVEGVKPNYVAFMAVL 445


>emb|CBI31172.3| unnamed protein product [Vitis vinifera]
          Length = 644

 Score =  192 bits (489), Expect = 2e-47
 Identities = 101/170 (59%), Positives = 125/170 (73%), Gaps = 12/170 (7%)
 Frame = -1

Query: 475 TSLALFHNSLLSFVQMRNQGKYPDHNTFPSVLKSSTSLMDFKLGESIHGLVIQLGMDFDL 296
           TS  LF +SL  F+QM   GKYPDHN FPSVLKS T + D + GES+HG +I+LGM FDL
Sbjct: 82  TSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDL 141

Query: 295 YTGNALMNMYCKLQGKEVSNGGTK----SRFSNVVSME--------SVKKVFDTMPQRDI 152
           YT NALMNMY K    E  N   K     + S+V S +        S++KVF+ MP+RDI
Sbjct: 142 YTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDI 201

Query: 151 VSWNTIVAGNARNGMYEEALVMVREMGMADLKPDAFTLSSVLPIFAEYVD 2
           VSWNT+++GNA+NGM+E+AL+MVREMG ADL+PD+FTLSSVLPIFAEYV+
Sbjct: 202 VSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVN 251



 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 46/150 (30%), Positives = 79/150 (52%)
 Frame = -1

Query: 463 LFHNSLLSFVQMRNQGKYPDHNTFPSVLKSSTSLMDFKLGESIHGLVIQLGMDFDLYTGN 284
           +  ++L+   +M N    PD  T  SVL      ++   G+ IHG  I+ G D D++ G+
Sbjct: 216 MHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGS 275

Query: 283 ALMNMYCKLQGKEVSNGGTKSRFSNVVSMESVKKVFDTMPQRDIVSWNTIVAGNARNGMY 104
           +L++MY K                    ++   +VF  +PQ D +SWN+I+AG  +NGM+
Sbjct: 276 SLIDMYAKC-----------------TRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMF 318

Query: 103 EEALVMVREMGMADLKPDAFTLSSVLPIFA 14
           +E L   ++M +A +KP+  + SS++P  A
Sbjct: 319 DEGLKFFQQMLIAKIKPNHVSFSSIMPACA 348