BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00025883
         (222 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containi...    47   2e-10
ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containi...    70   2e-10
ref|XP_002512534.1| pentatricopeptide repeat-containing protein,...    49   4e-10
ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...    47   5e-10
ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat...    47   5e-10

>ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic-like [Glycine max]
          Length = 534

 Score = 47.0 bits (110), Expect(2) = 2e-10
 Identities = 22/48 (45%), Positives = 30/48 (62%)
 Frame = -1

Query: 210 KNTVTWNTMISGYVQHREFGRAISTFQDMQAENAKPIVETMVS*LVIC 67
           +  VTWN+MISGYV+++    A+  F+ MQ E  +P   TMVS L  C
Sbjct: 219 RTRVTWNSMISGYVRNKRLMEALELFRKMQGERVEPSEFTMVSLLSAC 266



 Score = 43.1 bits (100), Expect(2) = 2e-10
 Identities = 17/26 (65%), Positives = 21/26 (80%)
 Frame = -2

Query: 86  LASLLSACAHLGALDMGYWIHGYIRR 9
           + SLLSACAHLGAL  G W+H Y++R
Sbjct: 259 MVSLLSACAHLGALKHGEWVHDYVKR 284


>ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 40/71 (56%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
 Frame = -1

Query: 222 MGFLKNTVTWNTMISGYVQHREFGRAISTFQDMQAENAKPIVETMVS*LVICLCSSWCIG 43
           MG  +N+VTWNTMIS YVQ  EFG AIS FQ MQ+EN KP   TMVS L      S C  
Sbjct: 164 MGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLL------SACAH 217

Query: 42  YGLLD--SWLH 16
            G LD   W+H
Sbjct: 218 LGALDMGEWIH 228


>ref|XP_002512534.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548495|gb|EEF49986.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 444

 Score = 48.9 bits (115), Expect(2) = 4e-10
 Identities = 21/48 (43%), Positives = 30/48 (62%)
 Frame = -1

Query: 210 KNTVTWNTMISGYVQHREFGRAISTFQDMQAENAKPIVETMVS*LVIC 67
           K+ V+W+ MISGY QH  F   ++ FQ+MQ +  KP   T+VS +  C
Sbjct: 254 KDLVSWSAMISGYAQHDRFAETLALFQEMQLDGVKPDETTLVSVVSAC 301



 Score = 40.0 bits (92), Expect(2) = 4e-10
 Identities = 16/26 (61%), Positives = 20/26 (76%)
 Frame = -2

Query: 86  LASLLSACAHLGALDMGYWIHGYIRR 9
           L S++SAC HL ALD G WIH Y+R+
Sbjct: 294 LVSVVSACTHLAALDQGKWIHLYLRK 319


>ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score = 47.4 bits (111), Expect(2) = 5e-10
 Identities = 22/48 (45%), Positives = 29/48 (60%)
 Frame = -1

Query: 210 KNTVTWNTMISGYVQHREFGRAISTFQDMQAENAKPIVETMVS*LVIC 67
           K+ V+W  MI GY++   F  A+  F++MQA N KP   TMVS L  C
Sbjct: 335 KDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTAC 382



 Score = 41.2 bits (95), Expect(2) = 5e-10
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = -2

Query: 86  LASLLSACAHLGALDMGYWIHGYIRRQK 3
           + S+L+ACAHLGAL++G WI  YI R K
Sbjct: 375 MVSVLTACAHLGALELGEWIRTYIDRNK 402


>ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score = 47.4 bits (111), Expect(2) = 5e-10
 Identities = 22/48 (45%), Positives = 29/48 (60%)
 Frame = -1

Query: 210 KNTVTWNTMISGYVQHREFGRAISTFQDMQAENAKPIVETMVS*LVIC 67
           K+ V+W  MI GY++   F  A+  F++MQA N KP   TMVS L  C
Sbjct: 314 KDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTAC 361



 Score = 41.2 bits (95), Expect(2) = 5e-10
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = -2

Query: 86  LASLLSACAHLGALDMGYWIHGYIRRQK 3
           + S+L+ACAHLGAL++G WI  YI R K
Sbjct: 354 MVSVLTACAHLGALELGEWIRTYIDRNK 381