BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00025822
         (390 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containi...   167   6e-40
ref|XP_002521664.1| pentatricopeptide repeat-containing protein,...   167   1e-39
ref|XP_002302000.1| predicted protein [Populus trichocarpa] gi|2...   150   8e-35
ref|XP_002893429.1| pentatricopeptide repeat-containing protein ...   149   3e-34
ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containi...   148   4e-34

>ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  167 bits (424), Expect = 6e-40
 Identities = 82/130 (63%), Positives = 95/130 (73%)
 Frame = +1

Query: 1   ALVTLYSKCNEVDRARRIFDLMLERDLVSWNAILSGYVNAGRVGDGKQLFDVMPEKNLLT 180
           AL TLY KC +VD AR++F+ M  +DLVSWNAILSGYVNAGR+ + K  F+ MPE+NLLT
Sbjct: 335 ALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLT 394

Query: 181 WAVMISGFAQNGLGEEALKLFNCLRVEDHEPCDYTFXXXXXXXXXXXXXEHGRQLHAQLV 360
           W VMISG AQNG GEE+LKLFN ++ E  EPCDY F              HGRQLHAQLV
Sbjct: 395 WTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLV 454

Query: 361 RFGFESSLSA 390
           R GF+SSLSA
Sbjct: 455 RLGFDSSLSA 464



 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 38/117 (32%), Positives = 64/117 (54%)
 Frame = +1

Query: 13  LYSKCNEVDRARRIFDLMLERDLVSWNAILSGYVNAGRVGDGKQLFDVMPEKNLLTWAVM 192
           L S  + +  AR++FD M ERD +SW  +++GYV  G +   +Q  D M EK ++ W  M
Sbjct: 203 LVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAM 262

Query: 193 ISGFAQNGLGEEALKLFNCLRVEDHEPCDYTFXXXXXXXXXXXXXEHGRQLHAQLVR 363
           ISG+  +G   EAL++F  + +   +  ++T+              HG+Q+HA ++R
Sbjct: 263 ISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILR 319


>ref|XP_002521664.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539055|gb|EEF40651.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 574

 Score =  167 bits (422), Expect = 1e-39
 Identities = 81/130 (62%), Positives = 95/130 (73%)
 Frame = +1

Query: 1   ALVTLYSKCNEVDRARRIFDLMLERDLVSWNAILSGYVNAGRVGDGKQLFDVMPEKNLLT 180
           ALVTLY KC +VD A+ +F+ M  RDLVSWN ILSGY+NAGR+ + K  F+ MPEKN+L+
Sbjct: 337 ALVTLYWKCGKVDEAQEVFNNMPVRDLVSWNTILSGYLNAGRMDEAKTFFEEMPEKNILS 396

Query: 181 WAVMISGFAQNGLGEEALKLFNCLRVEDHEPCDYTFXXXXXXXXXXXXXEHGRQLHAQLV 360
           W VMISG AQNG GEE LKLFN +++   EPCDY F             EHGRQLHAQLV
Sbjct: 397 WVVMISGLAQNGFGEEGLKLFNQMKLRGFEPCDYAFAGAITSCSMLGLLEHGRQLHAQLV 456

Query: 361 RFGFESSLSA 390
           RFGF+SSLSA
Sbjct: 457 RFGFDSSLSA 466



 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 9/130 (6%)
 Frame = +1

Query: 1   ALVTLYSKCNE---------VDRARRIFDLMLERDLVSWNAILSGYVNAGRVGDGKQLFD 153
           AL+++Y KC           +  ARR+FD M  RD +SW  I++GYV    +   +++FD
Sbjct: 192 ALISVYVKCASSPSVISSSLMGAARRLFDEMPVRDELSWTTIITGYVKNDDLDAAREVFD 251

Query: 154 VMPEKNLLTWAVMISGFAQNGLGEEALKLFNCLRVEDHEPCDYTFXXXXXXXXXXXXXEH 333
            M EK ++ W  MISG+   GL +EAL++F  + +   +  ++T+             +H
Sbjct: 252 GMREKLVVVWNAMISGYMHRGLYQEALEMFRKMYLAGLKLDEFTYTSIISACANAGFLQH 311

Query: 334 GRQLHAQLVR 363
           G+Q+HA +++
Sbjct: 312 GKQVHAYILK 321


>ref|XP_002302000.1| predicted protein [Populus trichocarpa] gi|222843726|gb|EEE81273.1|
           predicted protein [Populus trichocarpa]
          Length = 797

 Score =  150 bits (380), Expect = 8e-35
 Identities = 73/130 (56%), Positives = 91/130 (70%)
 Frame = +1

Query: 1   ALVTLYSKCNEVDRARRIFDLMLERDLVSWNAILSGYVNAGRVGDGKQLFDVMPEKNLLT 180
           AL+T Y KC +VD A+ IF+ M ERDLVSWN ILSGYVN   + + K  F+ MPEKN+L+
Sbjct: 333 ALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILS 392

Query: 181 WAVMISGFAQNGLGEEALKLFNCLRVEDHEPCDYTFXXXXXXXXXXXXXEHGRQLHAQLV 360
           W +MISG AQ G  EEALK FN ++++  EPCDY F             +HGRQLHAQ+V
Sbjct: 393 WIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVV 452

Query: 361 RFGFESSLSA 390
           R+G+ESSLSA
Sbjct: 453 RYGYESSLSA 462



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 9/130 (6%)
 Frame = +1

Query: 1   ALVTLYSKC---------NEVDRARRIFDLMLERDLVSWNAILSGYVNAGRVGDGKQLFD 153
           AL++ Y KC         + +  AR++FD M  RD +SW  I++GYV    +   K+  +
Sbjct: 188 ALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLN 247

Query: 154 VMPEKNLLTWAVMISGFAQNGLGEEALKLFNCLRVEDHEPCDYTFXXXXXXXXXXXXXEH 333
              +K  + W  MISG+A  GL  EA ++F  + +   +  ++TF               
Sbjct: 248 GTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRL 307

Query: 334 GRQLHAQLVR 363
           G+++HA  ++
Sbjct: 308 GKEMHAYFLK 317



 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 33/125 (26%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
 Frame = +1

Query: 4   LVTLYSKCNEVDRARRIFDLMLERDLVSWNAILSGYVNAGRVGDGKQLFDVMP--EKNLL 177
           L+ +YSK ++++ AR +FD + + D+V+   +++ Y  AG +   +++F   P   ++ +
Sbjct: 54  LIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSV 113

Query: 178 TWAVMISGFAQNGLGEEALKLFNCLRVEDHEPCDYTFXXXXXXXXXXXXXE-HGRQLHAQ 354
            +  MI+ ++ N  G  A++LF  ++ ++  P +YTF             E H +QLH  
Sbjct: 114 FYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCA 173

Query: 355 LVRFG 369
           +V+ G
Sbjct: 174 VVKSG 178


>ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297339271|gb|EFH69688.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 790

 Score =  149 bits (375), Expect = 3e-34
 Identities = 70/130 (53%), Positives = 92/130 (70%)
 Frame = +1

Query: 1   ALVTLYSKCNEVDRARRIFDLMLERDLVSWNAILSGYVNAGRVGDGKQLFDVMPEKNLLT 180
           +LVTLY KC + + AR IF+ M  +DLVSWNA+LSGYV++G +G+ K +F  M EKN+L+
Sbjct: 325 SLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILS 384

Query: 181 WAVMISGFAQNGLGEEALKLFNCLRVEDHEPCDYTFXXXXXXXXXXXXXEHGRQLHAQLV 360
           W +MISG A+NG GEE LKLF+C++ E  EPCDY F              +G+Q HAQLV
Sbjct: 385 WMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLV 444

Query: 361 RFGFESSLSA 390
           + GF+SSLSA
Sbjct: 445 KIGFDSSLSA 454



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 10/138 (7%)
 Frame = +1

Query: 1   ALVTLYSKCNE----VDRARRIFDLMLERDLVSWNAILSGYVNAGRVGDGKQLFDVMPEK 168
           ALV++YS+C      +  AR++FD + E+D  SW  +++GYV  G    GK+L   M E 
Sbjct: 189 ALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDEN 248

Query: 169 -NLLTWAVMISGFAQNGLGEEALKLFNCLRVEDHEPCDYTFXXXXXXXXXXXXXEHGRQL 345
             L+ +  MISG+   GL +EAL++   +     E  ++T+             + G+Q+
Sbjct: 249 MKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQV 308

Query: 346 HAQLVR-----FGFESSL 384
           HA ++R     F F++SL
Sbjct: 309 HAYVLRREDFSFHFDNSL 326



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 30/97 (30%), Positives = 58/97 (59%), Gaps = 2/97 (2%)
 Frame = +1

Query: 4   LVTLYSKCNEVDRARRIFDLMLERDLVSWNAILSGYVNAGRVGDGKQLFDVMP--EKNLL 177
           L+ +Y K +E+D AR++FD + E D ++   ++SGY  +G +   + +F+  P   ++ +
Sbjct: 55  LIDVYCKSSELDYARQLFDEISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTV 114

Query: 178 TWAVMISGFAQNGLGEEALKLFNCLRVEDHEPCDYTF 288
            +  MI+GF+ N  G  A+ LF  ++ E  +P D+T+
Sbjct: 115 MYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTY 151


>ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  148 bits (374), Expect = 4e-34
 Identities = 74/129 (57%), Positives = 91/129 (70%)
 Frame = +1

Query: 1   ALVTLYSKCNEVDRARRIFDLMLERDLVSWNAILSGYVNAGRVGDGKQLFDVMPEKNLLT 180
           AL+TLY K N+VD AR+IF  M  R++++WNAILSGYVNAGR+ + K  F+ MP KNLLT
Sbjct: 333 ALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLT 392

Query: 181 WAVMISGFAQNGLGEEALKLFNCLRVEDHEPCDYTFXXXXXXXXXXXXXEHGRQLHAQLV 360
             VMISG AQNG G+E LKLF  +R++  EPCD+ F             E+GRQLHAQLV
Sbjct: 393 LTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLV 452

Query: 361 RFGFESSLS 387
             G+ESSLS
Sbjct: 453 HLGYESSLS 461



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 8/129 (6%)
 Frame = +1

Query: 1   ALVTLYSK--------CNEVDRARRIFDLMLERDLVSWNAILSGYVNAGRVGDGKQLFDV 156
           AL+++Y K        C+ +  AR++FD M +RD ++W  +++GYV    +   +++F+ 
Sbjct: 189 ALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEA 248

Query: 157 MPEKNLLTWAVMISGFAQNGLGEEALKLFNCLRVEDHEPCDYTFXXXXXXXXXXXXXEHG 336
           M E     W  MISG+   G  +EAL L   +R    +  D T+             + G
Sbjct: 249 MVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMG 308

Query: 337 RQLHAQLVR 363
           +Q+HA +++
Sbjct: 309 KQVHAYILK 317



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 34/125 (27%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
 Frame = +1

Query: 4   LVTLYSKCNEVDRARRIFDLMLERDLVSWNAILSGYVNAGRVGDGKQLFDVMP--EKNLL 177
           L+ +Y K + +  AR++F+ +   D ++   +++ Y   G +  G+++F+  P   ++ +
Sbjct: 54  LLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSV 113

Query: 178 TWAVMISGFAQNGLGEEALKLFNCLRVEDHEPCDYTFXXXXXXXXXXXXXEHG-RQLHAQ 354
            +  MI+G+A NG G  AL+LF  +R +D  P D+TF             E    Q+H  
Sbjct: 114 FYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCA 173

Query: 355 LVRFG 369
           +V+ G
Sbjct: 174 VVKTG 178