BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00025804
         (665 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containi...   337   1e-90
ref|XP_002532248.1| pentatricopeptide repeat-containing protein,...   336   3e-90
ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containi...   319   3e-85
ref|XP_002301082.1| predicted protein [Populus trichocarpa] gi|2...   315   5e-84
ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containi...   305   5e-81

>ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Vitis vinifera]
          Length = 513

 Score =  337 bits (864), Expect = 1e-90
 Identities = 161/220 (73%), Positives = 186/220 (84%)
 Frame = -1

Query: 665 ETCKFHEGLFLNLMIHFSKSCLHERIVEMLFAIQPIVRERPSLKAISTCLNLLIEAREID 486
           ETCKFHEG+FLNLM HFSK  LHER+VEM  AI+PIVRE+PSLKAISTCLNLL+E+ ++D
Sbjct: 122 ETCKFHEGIFLNLMKHFSKLSLHERVVEMFDAIRPIVREKPSLKAISTCLNLLVESNQVD 181

Query: 485 LARNVLLELKERSDFKPNTCVFNILVKYHCKKGDLDSAFEVVNEMKKGEKSYPNLITYST 306
           L R  LL  K+  + +PNTC+FNILVK+HCK GD+DSAFEVV EMKK   SYPNLITYST
Sbjct: 182 LTRKFLLNSKKSLNLEPNTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYST 241

Query: 305 LMGGLCDTGRLQEAIGVFEEMVSKDQILPDTLTYNILINGFCRGGKVDRARKIMDFMRKN 126
           L+ GLC +GRL+EAI +FEEMVSKDQILPD LTYN LINGFC G KVDRA KIM+FM+KN
Sbjct: 242 LINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKN 301

Query: 125 ECEPNIFNYSSLMNGYCKEGRYEEAKEVFDEMRRSRLEID 6
            C PN+FNYS+LMNG+CKEGR EEAKEVFDEM+   L+ D
Sbjct: 302 GCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPD 341



 Score = 84.3 bits (207), Expect = 2e-14
 Identities = 47/169 (27%), Positives = 93/169 (55%), Gaps = 1/169 (0%)
 Frame = -1

Query: 545 PSLKAISTCLNLLIEAREIDLARNVLLELKERSDFKPNTCVFNILVKYHCKKGDLDSAFE 366
           P     +  +N      ++D A  ++ E  +++   PN   ++ L+   CK+G L+ A E
Sbjct: 270 PDALTYNALINGFCHGEKVDRALKIM-EFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKE 328

Query: 365 VVNEMKK-GEKSYPNLITYSTLMGGLCDTGRLQEAIGVFEEMVSKDQILPDTLTYNILIN 189
           V +EMK  G K  P+ + Y+TL+   C  GR+ EA+ + ++M  +++   DT+T+N+++ 
Sbjct: 329 VFDEMKSLGLK--PDTVGYTTLINFFCRAGRVDEAMELLKDM-RENKCRADTVTFNVILG 385

Query: 188 GFCRGGKVDRARKIMDFMRKNECEPNIFNYSSLMNGYCKEGRYEEAKEV 42
           G CR G+ + AR +++ +       N  +Y  ++N  C+EG  ++A ++
Sbjct: 386 GLCREGRFEEARGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQL 434



 Score = 61.2 bits (147), Expect = 2e-07
 Identities = 48/206 (23%), Positives = 91/206 (44%), Gaps = 34/206 (16%)
 Frame = -1

Query: 545 PSLKAISTCLNLLIEAREIDLARNVLLELKERSDFKPNTCVFNILVKYHCKKGDLDSAFE 366
           P++   S  +N   +   ++ A+ V  E+K     KP+T  +  L+ + C+ G +D A E
Sbjct: 305 PNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLG-LKPDTVGYTTLINFFCRAGRVDEAME 363

Query: 365 VVNEMKKGEKSYPNLITYSTLMGGLCDTGRLQEAIGVFE--------------------- 249
           ++ +M++  K   + +T++ ++GGLC  GR +EA G+ E                     
Sbjct: 364 LLKDMREN-KCRADTVTFNVILGGLCREGRFEEARGMLERLPYEGVYLNKASYRIVLNSL 422

Query: 248 ----EMVSKDQ---------ILPDTLTYNILINGFCRGGKVDRARKIMDFMRKNECEPNI 108
               E+    Q         +LP   T N L+   C  GKV  A   +  + +   +P  
Sbjct: 423 CREGELQKATQLVGLMLGRGVLPHFATSNELLVHLCEAGKVGDAVMALLGLLELGFKPEP 482

Query: 107 FNYSSLMNGYCKEGRYEEAKEVFDEM 30
            +++ L+   C+E +   A E+ D++
Sbjct: 483 NSWALLVELICRERKLLPAFELLDDL 508


>ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528066|gb|EEF30142.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 521

 Score =  336 bits (861), Expect = 3e-90
 Identities = 157/220 (71%), Positives = 188/220 (85%)
 Frame = -1

Query: 665 ETCKFHEGLFLNLMIHFSKSCLHERIVEMLFAIQPIVRERPSLKAISTCLNLLIEAREID 486
           ETCKFHE +FLNLM HF KS LHER++EM +AIQPIVRE+PSLKAISTCLN+L+E+++ID
Sbjct: 121 ETCKFHENIFLNLMKHFYKSSLHERVLEMFYAIQPIVREKPSLKAISTCLNILVESKQID 180

Query: 485 LARNVLLELKERSDFKPNTCVFNILVKYHCKKGDLDSAFEVVNEMKKGEKSYPNLITYST 306
           LA+  LL + E    +PNTC+FNILVK+HCK GDL+SA EV++EMKK  +SYPN+ITYST
Sbjct: 181 LAQKCLLYVNEHLKVRPNTCIFNILVKHHCKSGDLESALEVMHEMKKSRRSYPNVITYST 240

Query: 305 LMGGLCDTGRLQEAIGVFEEMVSKDQILPDTLTYNILINGFCRGGKVDRARKIMDFMRKN 126
           L+ GLC  GRL+EAI +FEEMVSKDQILPD LTY++LI GFC GGK DRARKIM+FMR N
Sbjct: 241 LIDGLCGNGRLKEAIELFEEMVSKDQILPDALTYSVLIKGFCHGGKADRARKIMEFMRSN 300

Query: 125 ECEPNIFNYSSLMNGYCKEGRYEEAKEVFDEMRRSRLEID 6
            C+PN+FNYS LMNG+CKEGR EEAKEVFDEM+ S L+ D
Sbjct: 301 GCDPNVFNYSVLMNGFCKEGRLEEAKEVFDEMKSSGLKPD 340



 Score = 80.5 bits (197), Expect = 3e-13
 Identities = 50/188 (26%), Positives = 94/188 (50%), Gaps = 3/188 (1%)
 Frame = -1

Query: 605 CLHERIVEMLFAIQPIVRER---PSLKAISTCLNLLIEAREIDLARNVLLELKERSDFKP 435
           C + R+ E +   + +V +    P     S  +       + D AR ++ E    +   P
Sbjct: 246 CGNGRLKEAIELFEEMVSKDQILPDALTYSVLIKGFCHGGKADRARKIM-EFMRSNGCDP 304

Query: 434 NTCVFNILVKYHCKKGDLDSAFEVVNEMKKGEKSYPNLITYSTLMGGLCDTGRLQEAIGV 255
           N   +++L+   CK+G L+ A EV +EMK      P+ + Y+TL+   C  GR+ EA+ +
Sbjct: 305 NVFNYSVLMNGFCKEGRLEEAKEVFDEMKSSGLK-PDTVGYTTLINCFCGVGRIDEAMEL 363

Query: 254 FEEMVSKDQILPDTLTYNILINGFCRGGKVDRARKIMDFMRKNECEPNIFNYSSLMNGYC 75
            +EM    +   D +T+N+L+ G CR G+ D A ++++ +       N  +Y  ++N  C
Sbjct: 364 LKEMTEM-KCKADAVTFNVLLKGLCREGRFDEALRMLENLAYEGVYLNKGSYRIVLNFLC 422

Query: 74  KEGRYEEA 51
           ++G  E++
Sbjct: 423 QKGELEKS 430



 Score = 59.7 bits (143), Expect = 5e-07
 Identities = 44/173 (25%), Positives = 79/173 (45%)
 Frame = -1

Query: 548 RPSLKAISTCLNLLIEAREIDLARNVLLELKERSDFKPNTCVFNILVKYHCKKGDLDSAF 369
           +P     +T +N       ID A  +L E+ E    K +   FN+L+K  C++G  D A 
Sbjct: 338 KPDTVGYTTLINCFCGVGRIDEAMELLKEMTEMK-CKADAVTFNVLLKGLCREGRFDEAL 396

Query: 368 EVVNEMKKGEKSYPNLITYSTLMGGLCDTGRLQEAIGVFEEMVSKDQILPDTLTYNILIN 189
            ++  +   E  Y N  +Y  ++  LC  G L+++  +   M+S+   +P   T N L+ 
Sbjct: 397 RMLENLAY-EGVYLNKGSYRIVLNFLCQKGELEKSCALLGLMLSRG-FVPHYATSNELLV 454

Query: 188 GFCRGGKVDRARKIMDFMRKNECEPNIFNYSSLMNGYCKEGRYEEAKEVFDEM 30
             C  G VD A   +  + +    P   +++ L+   C+E +     E+ DE+
Sbjct: 455 CLCEAGMVDNAVTALFGLTQMGFTPEPKSWAHLIEYICRERKLLFVFELVDEL 507


>ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Cucumis sativus]
           gi|449497032|ref|XP_004160294.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At5g18475-like [Cucumis sativus]
          Length = 504

 Score =  319 bits (818), Expect = 3e-85
 Identities = 146/220 (66%), Positives = 184/220 (83%)
 Frame = -1

Query: 665 ETCKFHEGLFLNLMIHFSKSCLHERIVEMLFAIQPIVRERPSLKAISTCLNLLIEAREID 486
           +TCK HEG+FLNLM HFSKS +HER+++M +AI+ IVRE+PSLKAISTCLNLL+E+  +D
Sbjct: 112 DTCKVHEGIFLNLMKHFSKSSMHERVLDMFYAIKSIVREKPSLKAISTCLNLLVESDRVD 171

Query: 485 LARNVLLELKERSDFKPNTCVFNILVKYHCKKGDLDSAFEVVNEMKKGEKSYPNLITYST 306
           LAR +L+  + + + +PNTC+FNILVK+HC+ GDL +AFEVV EMK    SYPNL+TYST
Sbjct: 172 LARKLLVNARSKLNLRPNTCIFNILVKHHCRNGDLQAAFEVVKEMKSARVSYPNLVTYST 231

Query: 305 LMGGLCDTGRLQEAIGVFEEMVSKDQILPDTLTYNILINGFCRGGKVDRARKIMDFMRKN 126
           L+GGLC+ G+L+EAI  FEEMVSKD ILPD LTYNILINGFC+ GKVDRAR I++FM+ N
Sbjct: 232 LIGGLCENGKLKEAIEFFEEMVSKDNILPDALTYNILINGFCQRGKVDRARTILEFMKSN 291

Query: 125 ECEPNIFNYSSLMNGYCKEGRYEEAKEVFDEMRRSRLEID 6
            C PN+FNYS LMNGYCKEGR +EAKEVF+E++   ++ D
Sbjct: 292 GCSPNVFNYSVLMNGYCKEGRLQEAKEVFNEIKSLGMKPD 331



 Score =  112 bits (280), Expect = 6e-23
 Identities = 59/172 (34%), Positives = 97/172 (56%)
 Frame = -1

Query: 545 PSLKAISTCLNLLIEAREIDLARNVLLELKERSDFKPNTCVFNILVKYHCKKGDLDSAFE 366
           P+L   ST +  L E  ++  A     E+  + +  P+   +NIL+   C++G +D A  
Sbjct: 224 PNLVTYSTLIGGLCENGKLKEAIEFFEEMVSKDNILPDALTYNILINGFCQRGKVDRART 283

Query: 365 VVNEMKKGEKSYPNLITYSTLMGGLCDTGRLQEAIGVFEEMVSKDQILPDTLTYNILING 186
           ++  MK    S PN+  YS LM G C  GRLQEA  VF E+ S   + PDT++Y  LIN 
Sbjct: 284 ILEFMKSNGCS-PNVFNYSVLMNGYCKEGRLQEAKEVFNEIKSLG-MKPDTISYTTLINC 341

Query: 185 FCRGGKVDRARKIMDFMRKNECEPNIFNYSSLMNGYCKEGRYEEAKEVFDEM 30
            CR G+VD A +++  M+  +C  +   ++ ++ G C+EGR++EA ++  ++
Sbjct: 342 LCRTGRVDEATELLQQMKDKDCRADTVTFNVMLGGLCREGRFDEALDMVQKL 393


>ref|XP_002301082.1| predicted protein [Populus trichocarpa] gi|222842808|gb|EEE80355.1|
           predicted protein [Populus trichocarpa]
          Length = 509

 Score =  315 bits (807), Expect = 5e-84
 Identities = 151/220 (68%), Positives = 181/220 (82%)
 Frame = -1

Query: 665 ETCKFHEGLFLNLMIHFSKSCLHERIVEMLFAIQPIVRERPSLKAISTCLNLLIEAREID 486
           ETCKFHE LFLNLM +F+KS   ER+VEM   IQPIVRE+PSLKAISTCLNLL+E++++D
Sbjct: 112 ETCKFHESLFLNLMKYFAKSSEFERVVEMFNKIQPIVREKPSLKAISTCLNLLVESKQVD 171

Query: 485 LARNVLLELKERSDFKPNTCVFNILVKYHCKKGDLDSAFEVVNEMKKGEKSYPNLITYST 306
           L R  LL+L +    KPNTC+FNI +KYHCK GDL+SAF VV EMKK   SYPNLITYST
Sbjct: 172 LLRGFLLDLNKDHMLKPNTCIFNIFIKYHCKSGDLESAFAVVKEMKKSSISYPNLITYST 231

Query: 305 LMGGLCDTGRLQEAIGVFEEMVSKDQILPDTLTYNILINGFCRGGKVDRARKIMDFMRKN 126
           LM GLC++GRL+EAI +FEEMVSKDQILPD LTYN+LINGF   GKVDRA+KIM+FM+ N
Sbjct: 232 LMDGLCESGRLKEAIELFEEMVSKDQILPDALTYNVLINGFSCWGKVDRAKKIMEFMKSN 291

Query: 125 ECEPNIFNYSSLMNGYCKEGRYEEAKEVFDEMRRSRLEID 6
            C PN+FNYS+LM+G+CKEGR EEA + F+EM+   L+ D
Sbjct: 292 GCSPNVFNYSALMSGFCKEGRLEEAMDAFEEMKIFGLKQD 331



 Score = 73.9 bits (180), Expect = 3e-11
 Identities = 38/130 (29%), Positives = 71/130 (54%)
 Frame = -1

Query: 440 KPNTCVFNILVKYHCKKGDLDSAFEVVNEMKKGEKSYPNLITYSTLMGGLCDTGRLQEAI 261
           K +T  + IL+ Y C+ G +D A  ++ EMK+  K   +++T + L+ G C  GR +EA+
Sbjct: 329 KQDTVGYTILINYFCRFGRIDEAMALLEEMKE-TKCKADIVTVNVLLRGFCGEGRTEEAL 387

Query: 260 GVFEEMVSKDQILPDTLTYNILINGFCRGGKVDRARKIMDFMRKNECEPNIFNYSSLMNG 81
           G+   + S + I  +  +Y I++N  C+ G +D+A +++         P+    + L+ G
Sbjct: 388 GMLNRL-SSEGIYLNKASYRIVLNSLCQKGDLDKALELLGLTLSRGFVPHHATSNELLVG 446

Query: 80  YCKEGRYEEA 51
            CK G  ++A
Sbjct: 447 LCKAGMADDA 456



 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 43/169 (25%), Positives = 80/169 (47%)
 Frame = -1

Query: 518 LNLLIEAREIDLARNVLLELKERSDFKPNTCVFNILVKYHCKKGDLDSAFEVVNEMKKGE 339
           +N       ID A  +L E+KE +  K +    N+L++  C +G  + A  ++N +   E
Sbjct: 339 INYFCRFGRIDEAMALLEEMKE-TKCKADIVTVNVLLRGFCGEGRTEEALGMLNRLSS-E 396

Query: 338 KSYPNLITYSTLMGGLCDTGRLQEAIGVFEEMVSKDQILPDTLTYNILINGFCRGGKVDR 159
             Y N  +Y  ++  LC  G L +A+ +    +S+   +P   T N L+ G C+ G  D 
Sbjct: 397 GIYLNKASYRIVLNSLCQKGDLDKALELLGLTLSRG-FVPHHATSNELLVGLCKAGMADD 455

Query: 158 ARKIMDFMRKNECEPNIFNYSSLMNGYCKEGRYEEAKEVFDEMRRSRLE 12
           A   +  + +   +P   +++ L+   C+E +   A E+ DE+  +  E
Sbjct: 456 AVVALYGLAEMGFKPEQDSWALLVEFVCRERKLLLAFELLDELTANECE 504


>ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Glycine max]
          Length = 546

 Score =  305 bits (781), Expect = 5e-81
 Identities = 142/221 (64%), Positives = 177/221 (80%)
 Frame = -1

Query: 665 ETCKFHEGLFLNLMIHFSKSCLHERIVEMLFAIQPIVRERPSLKAISTCLNLLIEAREID 486
           ETCKFHEG+F+NLM HFSKS LHE+++   F+IQPIVRE+PS KA+STCLNLL+++  +D
Sbjct: 155 ETCKFHEGIFVNLMKHFSKSSLHEKLLHAYFSIQPIVREKPSPKALSTCLNLLLDSNRVD 214

Query: 485 LARNVLLELKERSDFKPNTCVFNILVKYHCKKGDLDSAFEVVNEMKKGEKSYPNLITYST 306
           LAR +LL  K     KPN CVFNILVKYHCK GDLDSAFE+V EM+  E SYPNL+TYST
Sbjct: 215 LARKLLLHAKRDLTRKPNVCVFNILVKYHCKNGDLDSAFEIVEEMRNSEFSYPNLVTYST 274

Query: 305 LMGGLCDTGRLQEAIGVFEEMVSKDQILPDTLTYNILINGFCRGGKVDRARKIMDFMRKN 126
           LM GLC  GR++EA  +FEEMVS+D I+PD LTYN+LINGFCRGGK DRAR ++ FM+ N
Sbjct: 275 LMDGLCRNGRVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSN 334

Query: 125 ECEPNIFNYSSLMNGYCKEGRYEEAKEVFDEMRRSRLEIDA 3
            C PN++NYS+L++G CK G+ E+AK V  E++ S L+ DA
Sbjct: 335 GCYPNVYNYSALVDGLCKVGKLEDAKGVLAEIKGSGLKPDA 375



 Score =  111 bits (277), Expect = 1e-22
 Identities = 57/172 (33%), Positives = 97/172 (56%)
 Frame = -1

Query: 545 PSLKAISTCLNLLIEAREIDLARNVLLELKERSDFKPNTCVFNILVKYHCKKGDLDSAFE 366
           P+L   ST ++ L     +  A ++  E+  R    P+   +N+L+   C+ G  D A  
Sbjct: 267 PNLVTYSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARN 326

Query: 365 VVNEMKKGEKSYPNLITYSTLMGGLCDTGRLQEAIGVFEEMVSKDQILPDTLTYNILING 186
           V+  MK     YPN+  YS L+ GLC  G+L++A GV  E +    + PD +TY  LIN 
Sbjct: 327 VIQFMKSNG-CYPNVYNYSALVDGLCKVGKLEDAKGVLAE-IKGSGLKPDAVTYTSLINF 384

Query: 185 FCRGGKVDRARKIMDFMRKNECEPNIFNYSSLMNGYCKEGRYEEAKEVFDEM 30
            CR GK D A ++++ M++N C+ +   ++ L+ G C+EG++EEA ++ +++
Sbjct: 385 LCRNGKSDEAIELLEEMKENGCQADSVTFNVLLGGLCREGKFEEALDMVEKL 436



 Score = 78.6 bits (192), Expect = 1e-12
 Identities = 56/197 (28%), Positives = 98/197 (49%), Gaps = 3/197 (1%)
 Frame = -1

Query: 605 CLHERIVEMLFAIQPIVRER---PSLKAISTCLNLLIEAREIDLARNVLLELKERSDFKP 435
           C + R+ E     + +V      P     +  +N      + D ARNV+  +K    + P
Sbjct: 280 CRNGRVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCY-P 338

Query: 434 NTCVFNILVKYHCKKGDLDSAFEVVNEMKKGEKSYPNLITYSTLMGGLCDTGRLQEAIGV 255
           N   ++ LV   CK G L+ A  V+ E+K G    P+ +TY++L+  LC  G+  EAI +
Sbjct: 339 NVYNYSALVDGLCKVGKLEDAKGVLAEIK-GSGLKPDAVTYTSLINFLCRNGKSDEAIEL 397

Query: 254 FEEMVSKDQILPDTLTYNILINGFCRGGKVDRARKIMDFMRKNECEPNIFNYSSLMNGYC 75
            EEM  ++    D++T+N+L+ G CR GK + A  +++ + +     N  +Y  ++N   
Sbjct: 398 LEEM-KENGCQADSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKGSYRIVLNSLT 456

Query: 74  KEGRYEEAKEVFDEMRR 24
           ++   + AKE+   M R
Sbjct: 457 QKCELKRAKELLGLMLR 473