BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00025660
         (385 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containi...   120   9e-26
ref|XP_002527150.1| pentatricopeptide repeat-containing protein,...   107   8e-22
ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containi...   104   9e-21
ref|XP_004144886.1| PREDICTED: pentatricopeptide repeat-containi...   104   9e-21
ref|NP_179305.2| pentatricopeptide repeat-containing protein [Ar...    97   2e-18

>ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
           [Vitis vinifera] gi|297744485|emb|CBI37747.3| unnamed
           protein product [Vitis vinifera]
          Length = 878

 Score =  120 bits (302), Expect = 9e-26
 Identities = 59/129 (45%), Positives = 86/129 (66%), Gaps = 4/129 (3%)
 Frame = +3

Query: 9   EHQQLTKALLKNKNNPSLSWHLFKHLLTSPSSLSN----SYHKSIPTITHILISSKMFQQ 176
           +  +LTKAL+KN +NP+L+WHLFK +L+ P+S S+    S  +SIP ITHILI +KM  Q
Sbjct: 3   QRNKLTKALIKNTHNPTLAWHLFKRILSIPTSSSSISSRSILRSIPIITHILIRAKMISQ 62

Query: 177 LDHLHNLILLQPPDISYISLTTLTQTXXXXXXXXXXXXQFHSLRSRFPTRPPSIHLYNVL 356
           +DHL  L+L QP ++S++SL  L +             QF S RS+ P  PP ++LYN++
Sbjct: 63  IDHLQQLLLQQPQEVSHVSLIALIRILAKSGLSDLAFSQFQSFRSQVPANPPPVYLYNMV 122

Query: 357 LESSFKENR 383
           LESS +E++
Sbjct: 123 LESSLREDK 131


>ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223533489|gb|EEF35232.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 874

 Score =  107 bits (268), Expect = 8e-22
 Identities = 62/123 (50%), Positives = 76/123 (61%), Gaps = 1/123 (0%)
 Frame = +3

Query: 18  QLTKALLKNKNNPSLSWHLFKHLLTSPSSLSNSYHKSIPTITHILISSKMFQQLDHLHNL 197
           +LTKALL N +NP L+WHLFK +L+ P S SN   +SIP I+ ILI SKMF +LD LH L
Sbjct: 6   KLTKALLNNAHNPKLAWHLFKRILSLPIS-SNHRSQSIPIISRILIRSKMFNELDDLHQL 64

Query: 198 ILLQPP-DISYISLTTLTQTXXXXXXXXXXXXQFHSLRSRFPTRPPSIHLYNVLLESSFK 374
           +L  P  + S  SL  L                F SLRS FP + PSI+LYNVLL+S  +
Sbjct: 65  LLNSPSLESSDSSLENLVTVLAKSGFFNKAISHFKSLRSNFPEKQPSIYLYNVLLKSCIR 124

Query: 375 ENR 383
           ENR
Sbjct: 125 ENR 127


>ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
          Length = 875

 Score =  104 bits (259), Expect = 9e-21
 Identities = 56/126 (44%), Positives = 76/126 (60%), Gaps = 4/126 (3%)
 Frame = +3

Query: 18  QLTKALLKNKNNPSLSWHLFKHLLTSPSSLSNSYHK----SIPTITHILISSKMFQQLDH 185
           +L+KA+  N NNP+L+W LFK +L+SP   S+S+ K    S+P I  ILI++KM  Q+DH
Sbjct: 8   KLSKAIYLNSNNPNLAWLLFKRILSSPIPASSSFFKPSLQSVPAIARILITAKMHPQIDH 67

Query: 186 LHNLILLQPPDISYISLTTLTQTXXXXXXXXXXXXQFHSLRSRFPTRPPSIHLYNVLLES 365
           LH L+L Q  D ++ S  +L +T            QF SLR RFP  PP I  YN+L   
Sbjct: 68  LHQLLLSQHRDFAHPSGFSLVRTLADLGLLENAISQFRSLRDRFPHDPPPISFYNLLFRC 127

Query: 366 SFKENR 383
           S KE+R
Sbjct: 128 SLKESR 133


>ref|XP_004144886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
           gi|449472527|ref|XP_004153621.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
          Length = 875

 Score =  104 bits (259), Expect = 9e-21
 Identities = 56/126 (44%), Positives = 76/126 (60%), Gaps = 4/126 (3%)
 Frame = +3

Query: 18  QLTKALLKNKNNPSLSWHLFKHLLTSPSSLSNSYHK----SIPTITHILISSKMFQQLDH 185
           +L+KA+  N NNP+L+W LFK +L+SP   S+S+ K    S+P I  ILI++KM  Q+DH
Sbjct: 8   KLSKAIYLNSNNPNLAWLLFKRILSSPIPASSSFFKPSLQSVPAIARILITAKMHPQIDH 67

Query: 186 LHNLILLQPPDISYISLTTLTQTXXXXXXXXXXXXQFHSLRSRFPTRPPSIHLYNVLLES 365
           LH L+L Q  D ++ S  +L +T            QF SLR RFP  PP I  YN+L   
Sbjct: 68  LHQLLLSQHRDFAHPSGFSLVRTLADLGLLENAISQFRSLRDRFPHDPPPISFYNLLFRC 127

Query: 366 SFKENR 383
           S KE+R
Sbjct: 128 SLKESR 133


>ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g17140 gi|110737729|dbj|BAF00803.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|330251496|gb|AEC06590.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 874

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 55/127 (43%), Positives = 74/127 (58%), Gaps = 4/127 (3%)
 Frame = +3

Query: 15  QQLTKALLKNKNNPSLSWHLFKHLLTSPSSLSNSYH-KSIPTITHILISSKMFQQLDHLH 191
           Q L KALLKN NNP L+W +FK + +SPS  S+     + PTI  IL+ +KM +++  LH
Sbjct: 3   QSLVKALLKNTNNPRLAWRIFKRIFSSPSEESHGISLDATPTIARILVRAKMHEEIQELH 62

Query: 192 NLIL---LQPPDISYISLTTLTQTXXXXXXXXXXXXQFHSLRSRFPTRPPSIHLYNVLLE 362
           NLIL   +Q   +S  SL ++               QF  +RSRFP   PS++LYN+LLE
Sbjct: 63  NLILSSSIQKTKLS--SLLSVVSIFAKSNHIDKAFPQFQLVRSRFPENKPSVYLYNLLLE 120

Query: 363 SSFKENR 383
           S  KE R
Sbjct: 121 SCIKERR 127