BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00025645
         (233 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284388.2| PREDICTED: DNA repair protein XRCC4 [Vitis v...    68   7e-10
emb|CBI26376.3| unnamed protein product [Vitis vinifera]               68   7e-10
ref|XP_002517008.1| DNA-repair protein XRCC4, putative [Ricinus ...    63   2e-08
dbj|BAF03494.1| XRCC4 homolog [Populus nigra]                          60   2e-07
ref|XP_003590794.1| DNA repair protein XRCC4 [Medicago truncatul...    59   5e-07

>ref|XP_002284388.2| PREDICTED: DNA repair protein XRCC4 [Vitis vinifera]
          Length = 259

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 36/64 (56%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
 Frame = -1

Query: 233 RELRDRLSKQDDTGKSPQE-DESAGKTESFDEETDNDRSEGEAVESHPGTSKTVPATRQY 57
           RELRD++SK++ TGK PQE DES  KT SFD+E+DN+  E E+ ++  GTSK V  +R  
Sbjct: 191 RELRDQISKEETTGKLPQEEDESTDKTLSFDDESDNEAIEEESSKNLTGTSKHVSTSRPR 250

Query: 56  GRKR 45
           GRKR
Sbjct: 251 GRKR 254


>emb|CBI26376.3| unnamed protein product [Vitis vinifera]
          Length = 258

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 36/64 (56%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
 Frame = -1

Query: 233 RELRDRLSKQDDTGKSPQE-DESAGKTESFDEETDNDRSEGEAVESHPGTSKTVPATRQY 57
           RELRD++SK++ TGK PQE DES  KT SFD+E+DN+  E E+ ++  GTSK V  +R  
Sbjct: 191 RELRDQISKEETTGKLPQEEDESTDKTLSFDDESDNEAIEEESSKNLTGTSKHVSTSRPR 250

Query: 56  GRKR 45
           GRKR
Sbjct: 251 GRKR 254


>ref|XP_002517008.1| DNA-repair protein XRCC4, putative [Ricinus communis]
           gi|223543643|gb|EEF45171.1| DNA-repair protein XRCC4,
           putative [Ricinus communis]
          Length = 265

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 35/66 (53%), Positives = 48/66 (72%), Gaps = 3/66 (4%)
 Frame = -1

Query: 233 RELRDRLSKQDDTGKSPQ--EDESAGKTESFDEE-TDNDRSEGEAVESHPGTSKTVPATR 63
           R+LRD+LSK++ +GK PQ  E+ES  KTESF+E+ +D D+SE E  E   GTS+  P++R
Sbjct: 196 RQLRDQLSKKEASGKLPQEEEEESTDKTESFEEDSSDGDKSEEEPPEKVTGTSEDKPSSR 255

Query: 62  QYGRKR 45
             GRKR
Sbjct: 256 GRGRKR 261


>dbj|BAF03494.1| XRCC4 homolog [Populus nigra]
          Length = 255

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 31/63 (49%), Positives = 43/63 (68%)
 Frame = -1

Query: 233 RELRDRLSKQDDTGKSPQEDESAGKTESFDEETDNDRSEGEAVESHPGTSKTVPATRQYG 54
           RELRD+LSK++ +G+S QE E + KTESFD  +D+++S  +  E   GTSK  P  R Y 
Sbjct: 189 RELRDQLSKKEISGESAQEGEDSDKTESFDRGSDDEKSVEKPREKLAGTSKDPPPRRGYV 248

Query: 53  RKR 45
           RK+
Sbjct: 249 RKK 251


>ref|XP_003590794.1| DNA repair protein XRCC4 [Medicago truncatula]
           gi|355479842|gb|AES61045.1| DNA repair protein XRCC4
           [Medicago truncatula]
          Length = 256

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 30/63 (47%), Positives = 43/63 (68%)
 Frame = -1

Query: 233 RELRDRLSKQDDTGKSPQEDESAGKTESFDEETDNDRSEGEAVESHPGTSKTVPATRQYG 54
           RELRD+LSKQ +  KSPQE+E   KTESFDEE+D+ +S+ +  +    +SK   AT++  
Sbjct: 190 RELRDQLSKQGNGDKSPQEEEDPEKTESFDEESDDGKSDEDPQKCITSSSKDAGATKRSR 249

Query: 53  RKR 45
            +R
Sbjct: 250 PRR 252