BLASTX nr result

ID: Coptis21_contig00025608 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00025608
         (258 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66198.1| hypothetical protein [Beta vulgaris subsp. vulga...    59   4e-07
ref|XP_002332412.1| predicted protein [Populus trichocarpa] gi|2...    57   2e-06
ref|XP_002331338.1| predicted protein [Populus trichocarpa] gi|2...    56   4e-06
ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|2...    55   8e-06

>emb|CCA66198.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1381

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 28/81 (34%), Positives = 45/81 (55%)
 Frame = +3

Query: 12  FPNAHIRTFAHATSDHISILINLANPEEKLPRPFKFFDMWLHHESCMEVIEKAWNATSHV 191
           FP   +     + SDH  +L+  ++  +  PRPFKF D+WL H+ CME++EKAW  +  +
Sbjct: 207 FPALAVSILNRSISDHCPLLLQ-SSIVDWGPRPFKFQDVWLSHKGCMEIVEKAWIQSKEL 265

Query: 192 FPASRMLHRLDNTRKDLTAWN 254
                ++ +L   + DL  WN
Sbjct: 266 ----TLMQKLKKVKLDLKTWN 282


>ref|XP_002332412.1| predicted protein [Populus trichocarpa] gi|222832345|gb|EEE70822.1|
           predicted protein [Populus trichocarpa]
          Length = 349

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 22/81 (27%), Positives = 45/81 (55%)
 Frame = +3

Query: 12  FPNAHIRTFAHATSDHISILINLANPEEKLPRPFKFFDMWLHHESCMEVIEKAWNATSHV 191
           FP +  R      SDH  +++ +   ++ + +PF+FFDMW+ H+  M +++K W+  S  
Sbjct: 212 FPLSEARFLPSGMSDHSPMVVKVIGNDQNIKKPFRFFDMWMDHDEFMPLVKKVWDQNSGG 271

Query: 192 FPASRMLHRLDNTRKDLTAWN 254
            P  ++  +L   +++L  +N
Sbjct: 272 CPMYQLCCKLRKQKQELKLFN 292


>ref|XP_002331338.1| predicted protein [Populus trichocarpa] gi|222873371|gb|EEF10502.1|
           predicted protein [Populus trichocarpa]
          Length = 819

 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 22/81 (27%), Positives = 44/81 (54%)
 Frame = +3

Query: 12  FPNAHIRTFAHATSDHISILINLANPEEKLPRPFKFFDMWLHHESCMEVIEKAWNATSHV 191
           FP +  R      SDH  +++ +   ++   +PF+FFDMW+ H+  M +++K W+  S  
Sbjct: 589 FPLSEARFLPSGMSDHSPMVVKVIGNDQNKKKPFRFFDMWMDHDEFMPLVKKVWDQNSRG 648

Query: 192 FPASRMLHRLDNTRKDLTAWN 254
            P  ++  +L   +++L  +N
Sbjct: 649 CPMYQLCCKLRKLKQELKLFN 669


>ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|222870351|gb|EEF07482.1|
           predicted protein [Populus trichocarpa]
          Length = 1046

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 21/67 (31%), Positives = 38/67 (56%)
 Frame = +3

Query: 12  FPNAHIRTFAHATSDHISILINLANPEEKLPRPFKFFDMWLHHESCMEVIEKAWNATSHV 191
           FP +  R      SDH  +++ +   ++ + +PF+FFDMW+ H+  M +++K W+  S  
Sbjct: 666 FPLSKARFLPSGMSDHSPMVVKVIGNDQNIKKPFRFFDMWMDHDEFMPLVKKVWDQNSGG 725

Query: 192 FPASRML 212
            P S +L
Sbjct: 726 CPISNLL 732


Top