BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00025554
         (434 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI35029.3| unnamed protein product [Vitis vinifera]              186   1e-45
ref|XP_002276684.1| PREDICTED: putative pentatricopeptide repeat...   186   1e-45
ref|XP_002517451.1| pentatricopeptide repeat-containing protein,...   177   6e-43
ref|XP_002877120.1| pentatricopeptide repeat-containing protein ...   168   4e-40
ref|NP_189507.2| pentatricopeptide repeat-containing protein [Ar...   164   5e-39

>emb|CBI35029.3| unnamed protein product [Vitis vinifera]
          Length = 1596

 Score =  186 bits (473), Expect = 1e-45
 Identities = 88/142 (61%), Positives = 107/142 (75%)
 Frame = +1

Query: 4   LLRNMKALYGIVPKHEHYSCTVDLLCRAGRLNEALELIQTMPMRPLASVWGSLLSACKTH 183
           LL NM+A YGI+PKHEHYSC VDLLCRAG+L+EAL+LI+ MPM+P A+VWG+LLS C+TH
Sbjct: 332 LLENMEARYGILPKHEHYSCMVDLLCRAGQLDEALKLIRRMPMKPRAAVWGALLSGCRTH 391

Query: 184 GNXXXXXXXXXXXXQIEHDSGAQEDGAYVQLSNIYLNAQRCSDAGRIRMMMDDKGIKKTP 363
            N             + +  G +EDGAYVQLSNIYL AQ+C DA RIR M+ DK IK  P
Sbjct: 392 NNVDLAELAARELLMVGNGDGTEEDGAYVQLSNIYLAAQKCEDACRIRRMIGDKRIKTKP 451

Query: 364 GCSVIEVNGKVNDFVAGDVVHP 429
           GCS+IEV G+VN FV+GD+ HP
Sbjct: 452 GCSLIEVEGEVNQFVSGDISHP 473


>ref|XP_002276684.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g28640-like [Vitis vinifera]
          Length = 511

 Score =  186 bits (473), Expect = 1e-45
 Identities = 88/142 (61%), Positives = 107/142 (75%)
 Frame = +1

Query: 4   LLRNMKALYGIVPKHEHYSCTVDLLCRAGRLNEALELIQTMPMRPLASVWGSLLSACKTH 183
           LL NM+A YGI+PKHEHYSC VDLLCRAG+L+EAL+LI+ MPM+P A+VWG+LLS C+TH
Sbjct: 332 LLENMEARYGILPKHEHYSCMVDLLCRAGQLDEALKLIRRMPMKPRAAVWGALLSGCRTH 391

Query: 184 GNXXXXXXXXXXXXQIEHDSGAQEDGAYVQLSNIYLNAQRCSDAGRIRMMMDDKGIKKTP 363
            N             + +  G +EDGAYVQLSNIYL AQ+C DA RIR M+ DK IK  P
Sbjct: 392 NNVDLAELAARELLMVGNGDGTEEDGAYVQLSNIYLAAQKCEDACRIRRMIGDKRIKTKP 451

Query: 364 GCSVIEVNGKVNDFVAGDVVHP 429
           GCS+IEV G+VN FV+GD+ HP
Sbjct: 452 GCSLIEVEGEVNQFVSGDISHP 473


>ref|XP_002517451.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543462|gb|EEF44993.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 428

 Score =  177 bits (450), Expect = 6e-43
 Identities = 84/139 (60%), Positives = 107/139 (76%)
 Frame = +1

Query: 4   LLRNMKALYGIVPKHEHYSCTVDLLCRAGRLNEALELIQTMPMRPLASVWGSLLSACKTH 183
           LL NMKA YGIVP+HEHYSC VDLLCRAGR +EAL LI+ MPM+PLASVWG++LS+C+TH
Sbjct: 254 LLDNMKARYGIVPRHEHYSCVVDLLCRAGRWDEALALIKRMPMKPLASVWGAVLSSCRTH 313

Query: 184 GNXXXXXXXXXXXXQIEHDSGAQEDGAYVQLSNIYLNAQRCSDAGRIRMMMDDKGIKKTP 363
            N            Q+E+ +G +ED A+VQL NIYL+  R  DA +I  ++ ++G+KKTP
Sbjct: 314 KNAELAEFAVQELLQLENGNGNEEDAAFVQLWNIYLSTGRGEDASKIHRLIGERGLKKTP 373

Query: 364 GCSVIEVNGKVNDFVAGDV 420
           GCS+IEVNG VN+FV+GDV
Sbjct: 374 GCSMIEVNGMVNEFVSGDV 392


>ref|XP_002877120.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297322958|gb|EFH53379.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 399

 Score =  168 bits (426), Expect = 4e-40
 Identities = 78/142 (54%), Positives = 104/142 (73%)
 Frame = +1

Query: 4   LLRNMKALYGIVPKHEHYSCTVDLLCRAGRLNEALELIQTMPMRPLASVWGSLLSACKTH 183
           +L NM+A YGI PKHEHYSC VDL+CRAGRL++AL+LI+ MPM+PLASVWG+LL+ C+TH
Sbjct: 238 MLGNMEARYGITPKHEHYSCIVDLMCRAGRLDDALDLIEKMPMKPLASVWGALLNGCRTH 297

Query: 184 GNXXXXXXXXXXXXQIEHDSGAQEDGAYVQLSNIYLNAQRCSDAGRIRMMMDDKGIKKTP 363
            N             +E  +  +E+ A VQLSNIY + QR  +A ++R M++ +GI+KTP
Sbjct: 298 KNVELGELAVKNLLDLEKGNAEEEEAALVQLSNIYFSVQRNPEASKVRGMIEQRGIRKTP 357

Query: 364 GCSVIEVNGKVNDFVAGDVVHP 429
           G SV+EV+G V  FV+GDV HP
Sbjct: 358 GWSVLEVDGNVTKFVSGDVSHP 379


>ref|NP_189507.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75273574|sp|Q9LJI9.1|PP260_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g28660 gi|9294280|dbj|BAB02182.1| unnamed protein
           product [Arabidopsis thaliana]
           gi|20259531|gb|AAM13885.1| unknown protein [Arabidopsis
           thaliana] gi|24030460|gb|AAN41382.1| unknown protein
           [Arabidopsis thaliana] gi|332643950|gb|AEE77471.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 504

 Score =  164 bits (416), Expect = 5e-39
 Identities = 77/142 (54%), Positives = 104/142 (73%)
 Frame = +1

Query: 4   LLRNMKALYGIVPKHEHYSCTVDLLCRAGRLNEALELIQTMPMRPLASVWGSLLSACKTH 183
           +L NM+A YGI PKHEHYSC VDL+CRAGRL++AL+LI+ MPM+PLASVWG+LL+ C+TH
Sbjct: 343 MLENMEARYGITPKHEHYSCIVDLMCRAGRLDDALDLIEKMPMKPLASVWGALLNGCRTH 402

Query: 184 GNXXXXXXXXXXXXQIEHDSGAQEDGAYVQLSNIYLNAQRCSDAGRIRMMMDDKGIKKTP 363
            N             +E  +  +E+ A VQLSNIY + QR  +A ++R M++ +GI+KTP
Sbjct: 403 KNVELGELAVQNLLDLEKGNVEEEEAALVQLSNIYFSVQRNPEAFKVRGMIEQRGIRKTP 462

Query: 364 GCSVIEVNGKVNDFVAGDVVHP 429
           G S++EV+G V  FV+GDV HP
Sbjct: 463 GWSLLEVDGIVTKFVSGDVSHP 484