BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00025545
         (302 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thalia...    70   2e-10
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...    66   3e-09
gb|ABN06084.1| Polynucleotidyl transferase, Ribonuclease H fold ...    63   2e-08
gb|ABD32189.2| Polynucleotidyl transferase, Ribonuclease H fold ...    63   2e-08
dbj|BAJ96746.1| predicted protein [Hordeum vulgare subsp. vulgare]     63   3e-08

>ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thaliana]
           gi|4972055|emb|CAB43923.1| putative protein [Arabidopsis
           thaliana] gi|7269807|emb|CAB79667.1| putative protein
           [Arabidopsis thaliana] gi|67633766|gb|AAY78807.1|
           putative reverse transcriptase/RNA-dependent DNA
           polymerase [Arabidopsis thaliana]
           gi|332660185|gb|AEE85585.1| Ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 575

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
 Frame = +2

Query: 8   WKWDESGEYSVKSAYNGCIQLIT-----DTITVVQDTSIYKQVWKMIVSFKQRFFVWQCL 172
           W +  SG+Y+VKS Y    Q+I        ++      IY+++WK   S K + F+W+CL
Sbjct: 215 WDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCL 274

Query: 173 QGVIPTADLLASHHFYVQLECTLCESFPETQIHVFFECSFSR 298
              +P A  LA  H   +  C  C S  ET  H+ F+C+F+R
Sbjct: 275 SNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFAR 316


>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1374

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
 Frame = +2

Query: 8    WKWDESGEYSVKSAYNGCIQLITDTIT---VVQDT--SIYKQVWKMIVSFKQRFFVWQCL 172
            W++  SG YSVKS Y    ++I        V+Q +   I++Q+WK+ V  K   F+W+C+
Sbjct: 1012 WEYSRSGHYSVKSGYWVMTEIINQRNNPQEVLQPSLDPIFQQIWKLDVPPKIHHFLWRCV 1071

Query: 173  QGVIPTADLLASHHFYVQLECTLCESFPETQIHVFFECSFSR 298
               +  A  LA  H   +  C  C S  ET  H+ F+C F+R
Sbjct: 1072 NNCLSVASNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFAR 1113


>gb|ABN06084.1| Polynucleotidyl transferase, Ribonuclease H fold [Medicago
           truncatula]
          Length = 519

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 29/97 (29%), Positives = 53/97 (54%)
 Frame = +2

Query: 2   LVWKWDESGEYSVKSAYNGCIQLITDTITVVQDTSIYKQVWKMIVSFKQRFFVWQCLQGV 181
           ++WK +  G+YSV+SAY  C++ + DT + ++    +  +W++ V  K + F+W+  +GV
Sbjct: 133 IIWKAENDGKYSVRSAYTLCVEELIDT-SFLRRPGYWSDIWRLKVPPKIKNFMWRVCRGV 191

Query: 182 IPTADLLASHHFYVQLECTLCESFPETQIHVFFECSF 292
           +PT + L          C  C +  E   H+F  C+F
Sbjct: 192 LPTRNKLRDKGVQCPEACVNCSTTSEDVKHLFCVCTF 228


>gb|ABD32189.2| Polynucleotidyl transferase, Ribonuclease H fold [Medicago
           truncatula]
          Length = 612

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 29/97 (29%), Positives = 53/97 (54%)
 Frame = +2

Query: 2   LVWKWDESGEYSVKSAYNGCIQLITDTITVVQDTSIYKQVWKMIVSFKQRFFVWQCLQGV 181
           ++WK +  G+YSV+SAY  C++ + DT + ++    +  +W++ V  K + F+W+  +GV
Sbjct: 226 IIWKAENDGKYSVRSAYTLCVEELIDT-SFLRRPGYWSDIWRLKVPPKIKNFMWRVCRGV 284

Query: 182 IPTADLLASHHFYVQLECTLCESFPETQIHVFFECSF 292
           +PT + L          C  C +  E   H+F  C+F
Sbjct: 285 LPTRNKLRDKGVQCPEACVNCSTTSEDVKHLFCVCTF 321


>dbj|BAJ96746.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 389

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 35/99 (35%), Positives = 46/99 (46%)
 Frame = +2

Query: 2   LVWKWDESGEYSVKSAYNGCIQLITDTITVVQDTSIYKQVWKMIVSFKQRFFVWQCLQGV 181
           L W+W  SG Y+ +SAY    Q  T   +       +K +WK     K +FF W   Q  
Sbjct: 276 LTWRWTTSGVYTSQSAYLATFQGSTTCFS-------WKLIWKNGAPPKVKFFHWLACQDR 328

Query: 182 IPTADLLASHHFYVQLECTLCESFPETQIHVFFECSFSR 298
             TA+ LA H       C LC+  PET  H+  EC F+R
Sbjct: 329 CWTAERLARHGLQHHPRCLLCDQAPETTRHLMLECPFAR 367