BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00025494
         (370 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA97516.1| retrotransposon protein, putative, Ty3-gypsy subc...    67   2e-15
gb|ABB47119.1| retrotransposon protein, putative, Ty3-gypsy subc...    67   3e-15
gb|AAL79340.1|AC099402_4 Putative 22 kDa kafirin cluster; Ty3-Gy...    86   3e-15
dbj|BAL46523.1| hypothetical protein [Gentiana scabra x Gentiana...    86   3e-15
prf||1510387A retrotransposon del1-46                                  86   4e-15

>gb|ABA97516.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1113

 Score = 67.0 bits (162), Expect(2) = 2e-15
 Identities = 33/78 (42%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
 Frame = +3

Query: 135 GLTTAPVECRDLMNRIIHPQLYQCAVVFVDKVLVYLETQDDPEIHMRVTMQILTSHKLYA 314
           GLT APV   +LMN++    L +   VF+D +L+Y +++++ E H+R+ ++ L  H+LYA
Sbjct: 467 GLTNAPVFFMNLMNKVFMEFLDKFVAVFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYA 526

Query: 315 --SKFEYWEKEVKFLGLV 362
             SK ++W  EVKFLG V
Sbjct: 527 KFSKCDFWLSEVKFLGHV 544



 Score = 39.7 bits (91), Expect(2) = 2e-15
 Identities = 21/45 (46%), Positives = 29/45 (64%)
 Frame = +2

Query: 11  RSEILFEVRFEDYQLQVKVGDISKTAFCTHYGRYEIFVMSFGFDN 145
           R + LF+ + +  +L+++  DI KTAF T YG YE  VMSFG  N
Sbjct: 427 RIDDLFD-QLKGAKLRIREEDIPKTAFTTRYGLYECTVMSFGLTN 470


>gb|ABB47119.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1522

 Score = 66.6 bits (161), Expect(2) = 3e-15
 Identities = 33/78 (42%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
 Frame = +3

Query: 135 GLTTAPVECRDLMNRIIHPQLYQCAVVFVDKVLVYLETQDDPEIHMRVTMQILTSHKLYA 314
           GLT AP    +LMN++    L +  VVF+D +L+Y +++++ E H+R+ ++ L  H+LYA
Sbjct: 710 GLTNAPAFFMNLMNKVFMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLVLEKLREHQLYA 769

Query: 315 --SKFEYWEKEVKFLGLV 362
             SK ++W  EVKFLG V
Sbjct: 770 KFSKCDFWLTEVKFLGHV 787



 Score = 39.7 bits (91), Expect(2) = 3e-15
 Identities = 18/32 (56%), Positives = 22/32 (68%)
 Frame = +2

Query: 50  QLQVKVGDISKTAFCTHYGRYEIFVMSFGFDN 145
           +L+++  DI KTAF T YG YE  VMSFG  N
Sbjct: 682 ELRIREEDIPKTAFTTRYGLYECTVMSFGLTN 713


>gb|AAL79340.1|AC099402_4 Putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa]
           gi|21327374|gb|AAM48279.1|AC122148_32 Putative 22 kDa
           kafirin cluster; Ty3-Gypsy type [Oryza sativa Japonica
           Group] gi|31431495|gb|AAP53268.1| retrotransposon
           protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1230

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 52/126 (41%), Positives = 72/126 (57%), Gaps = 4/126 (3%)
 Frame = +3

Query: 3   QL*GVKFFSKFDLRIISFRSKLEIS--LKLLFVHIMGAMKFL*CHLGLTTAPVECRDLMN 176
           QL G + FSK DL+    + K++ S   K  F    G  ++L    GLT AP    DLMN
Sbjct: 575 QLQGARVFSKIDLQSGYHQLKIKPSDIPKTAFRARYGHYEYLVMPFGLTNAPAAFMDLMN 634

Query: 177 RIIHPQLYQCAVVFVDKVLVYLETQDDPEIHMRVTMQILTSHKLYA--SKFEYWEKEVKF 350
           RI  P L Q  VVF+D +L+Y +T++D   H+R+ +Q L  HKL+A   K ++W  +V F
Sbjct: 635 RIFKPYLDQFVVVFIDDILIYSKTKEDHANHLRIVLQTLRDHKLFAKLKKCDFWMDKVSF 694

Query: 351 LGLVTS 368
           LG V S
Sbjct: 695 LGHVIS 700


>dbj|BAL46523.1| hypothetical protein [Gentiana scabra x Gentiana triflora]
          Length = 1152

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 53/126 (42%), Positives = 72/126 (57%), Gaps = 4/126 (3%)
 Frame = +3

Query: 3   QL*GVKFFSKFDLRIISFRSKLEIS--LKLLFVHIMGAMKFL*CHLGLTTAPVECRDLMN 176
           QL G K FSK DLR    + K++++   K  F    G  +FL    GLT AP    DLM 
Sbjct: 292 QLQGKKVFSKIDLRSGYHQLKIKVADRPKTAFSTRYGHYEFLVMPFGLTNAPSAFMDLMQ 351

Query: 177 RIIHPQLYQCAVVFVDKVLVYLETQDDPEIHMRVTMQILTSHKLYA--SKFEYWEKEVKF 350
           R+  P L +  VVF+D +L+Y + + + E H+R+ +Q L   KLYA  SK E+W K+V F
Sbjct: 352 RVFMPYLDKFVVVFIDDILIYSKDEKEHEEHLRIVLQTLKEKKLYAKFSKCEFWLKQVSF 411

Query: 351 LGLVTS 368
           LG V S
Sbjct: 412 LGHVIS 417


>prf||1510387A retrotransposon del1-46
          Length = 1443

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
 Frame = +3

Query: 21  FFSKFDLRIISFRSKLEISL-KLLFVHIMGAMKFL*CHLGLTTAPVECRDLMNRIIHPQL 197
           +FSK DLR    + ++   + K  F    G  +FL    GLT  P    +LMNR+    L
Sbjct: 608 YFSKIDLRFRYHQLRIRADIPKTAFRTRYGHYEFLVMPFGLTNVPTAFMNLMNRVFREYL 667

Query: 198 YQCAVVFVDKVLVYLETQDDPEIHMRVTMQILTSHKLYA--SKFEYWEKEVKFLGLVTS 368
            +  VVFVD VL+Y  TQ D E H+R+++Q+L +++LYA  SK E+W ++VKFLG V S
Sbjct: 668 DKFIVVFVDYVLIYSRTQKDHEHHLRISLQLLRNNQLYAKLSKCEFWMEKVKFLGHVVS 726