BLASTX nr result

ID: Coptis21_contig00025392 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00025392
         (794 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276375.1| PREDICTED: uncharacterized protein LOC100256...   185   9e-45
gb|ABK20308.1| Myb transcription factor [Malus x domestica] gi|3...   168   1e-39
ref|XP_002312135.1| predicted protein [Populus trichocarpa] gi|2...   158   1e-36
emb|CCA29114.1| putative MYB transcription factor [Rosa hybrid c...   157   3e-36
ref|XP_002276341.1| PREDICTED: transcription factor MYB104 [Viti...   152   1e-34

>ref|XP_002276375.1| PREDICTED: uncharacterized protein LOC100256309 [Vitis vinifera]
           gi|297740274|emb|CBI30456.3| unnamed protein product
           [Vitis vinifera]
          Length = 410

 Score =  185 bits (470), Expect = 9e-45
 Identities = 95/186 (51%), Positives = 126/186 (67%), Gaps = 2/186 (1%)
 Frame = +3

Query: 3   PSLFRPVARVSAFNIYIPPNGTRNVSQLSREVPCTGPLVQATQPDISICRLLEGVCGEPL 182
           P+LFRPVARVSAFN+Y   +G  +     R VP  GPL+QA+ PD  IC+L++G  GE L
Sbjct: 221 PTLFRPVARVSAFNVYSSLDGPEHAFPFPRPVPMQGPLIQASTPDAGICKLIQGDSGEQL 280

Query: 183 VPSRCGHGCCGTKGERNPQSSLLGXXXXXXXXXXXXSSHELASIATDLSKIAWLKSGLEN 362
           VP RCGHGCC +    N  +SLLG            SS ELA+IATD+S IAWLKSGLEN
Sbjct: 281 VPQRCGHGCCESPRGGNLGNSLLGPEFVEFSEPPPFSSFELAAIATDISNIAWLKSGLEN 340

Query: 363 SNTK--GNAGSSCVMPQGACLEMGNLKESRMNELMRFEEGRNRVMGLMTDVMSTQMSSQT 536
           S  +  G+A     M +G+ ++M   +ESR N+ +RFEEG+N++MG+MTDV STQ+  Q+
Sbjct: 341 STVRVMGDAAGR-TMSRGSQVQMARFEESRKNDHLRFEEGKNKLMGMMTDVRSTQIGKQS 399

Query: 537 FALPAR 554
           F++PA+
Sbjct: 400 FSVPAK 405


>gb|ABK20308.1| Myb transcription factor [Malus x domestica]
           gi|302398917|gb|ADL36753.1| MYB domain class
           transcription factor [Malus x domestica]
          Length = 412

 Score =  168 bits (426), Expect = 1e-39
 Identities = 94/180 (52%), Positives = 115/180 (63%), Gaps = 3/180 (1%)
 Frame = +3

Query: 18  PVARVSAFNIYIPPNGTRNVSQLSREVPCTGPLVQATQPDISICRLLEGVCGEPLVPSRC 197
           PVARVSAF++Y  P+   N S LSR VP  GPLV  T+ D      LEG C EP VP RC
Sbjct: 227 PVARVSAFSVYNRPSVPANASSLSRTVPSHGPLVPITKLDFGFDNFLEGACNEPTVPQRC 286

Query: 198 GHGCCGTKGERNPQSSLLGXXXXXXXXXXXXSSHELASIATDLSKIAWLKSGLENSNTK- 374
           GHGCC  + E + QSSLLG            SSHEL SIATDL+KIAW+K GLE++  + 
Sbjct: 287 GHGCC-DRIEGHSQSSLLGPEFVEYDEPLPFSSHELISIATDLNKIAWIKGGLESNGIRM 345

Query: 375 -GNAGSSCVMPQGA-CLEMGNLKESRMNELMRFEEGRNRVMGLMTDVMSTQMSSQTFALP 548
             +  S  V    A  L+MG    + MN+ MRFEEGRN++MG+MTDV+STQ+  QTFA+P
Sbjct: 346 PEHVASQRVFQAAATTLQMGLPANTPMNDHMRFEEGRNKLMGMMTDVLSTQVPRQTFAMP 405


>ref|XP_002312135.1| predicted protein [Populus trichocarpa] gi|222851955|gb|EEE89502.1|
           predicted protein [Populus trichocarpa]
          Length = 309

 Score =  158 bits (400), Expect = 1e-36
 Identities = 89/178 (50%), Positives = 114/178 (64%), Gaps = 4/178 (2%)
 Frame = +3

Query: 3   PSLFRPVARVSAFNIYIPPNGTRNVSQLSREVPCTGPLVQATQPDISICRLLEGVCGEPL 182
           P+L RP ARVSAF +Y PP+G +  S L+R +P  GP VQ  +PD+  C+ LE V  EP+
Sbjct: 131 PTLPRPEARVSAFKVYNPPSGLKMSSGLTRTLPTHGPSVQTPKPDLGSCKFLEDVHCEPI 190

Query: 183 VPSRCGHGCCGTKGERNPQSSLLGXXXXXXXXXXXXSSHELASIATDLSKIAWLKSGLEN 362
           +PSRCG+GCC T    +P SSLLG            SS EL SIATDL+ IAW+KSGLEN
Sbjct: 191 IPSRCGYGCCATPSGGHPPSSLLGPEFVEYEEPPPFSSQELISIATDLNNIAWMKSGLEN 250

Query: 363 SNT--KGNAGSSCVMPQGACL--EMGNLKESRMNELMRFEEGRNRVMGLMTDVMSTQM 524
           S+T    NA +S  M QG  +  +MG  +++  N  M FEEGR+R+MG M   +STQM
Sbjct: 251 SSTGIPSNA-ASYRMSQGTPVDSQMGMSEQNLRNGHMHFEEGRSRLMGTMAGTISTQM 307


>emb|CCA29114.1| putative MYB transcription factor [Rosa hybrid cultivar]
          Length = 284

 Score =  157 bits (396), Expect = 3e-36
 Identities = 81/172 (47%), Positives = 112/172 (65%), Gaps = 1/172 (0%)
 Frame = +3

Query: 6   SLFRPVARVSAFNIYIPPNGTRNVSQLSREVPCTGPLVQATQPDISICRLLEGVCGEPLV 185
           +LFRPVARVSAF++Y    G    S L R +P  GPLVQ  + D+ IC+L+EG+ GE  V
Sbjct: 113 TLFRPVARVSAFSVYNHLGGQDPSSSLQRPIPVQGPLVQVAKLDVGICKLVEGIYGEWSV 172

Query: 186 PSRCGHGCCGTKGERNPQSSLLGXXXXXXXXXXXXSSHELASIATDLSKIAWLKSGLENS 365
           P +CGHGCC T+  RN ++SLLG             S ELA+IATD+S +AWLKSGLENS
Sbjct: 173 PDQCGHGCCCTQNGRNTENSLLGPDFVEFSEPPCFPSFELAAIATDISNLAWLKSGLENS 232

Query: 366 NTKGNAGSSCVMPQGACL-EMGNLKESRMNELMRFEEGRNRVMGLMTDVMST 518
           + +    ++  +P  A   ++G+ +ESRMN L   EE ++R+M + T+V+ST
Sbjct: 233 SARVTGDAAGSIPSHASQGQLGHFEESRMNHLFHHEERKDRLMSMKTNVLST 284


>ref|XP_002276341.1| PREDICTED: transcription factor MYB104 [Vitis vinifera]
           gi|296086112|emb|CBI31553.3| unnamed protein product
           [Vitis vinifera]
          Length = 378

 Score =  152 bits (383), Expect = 1e-34
 Identities = 82/176 (46%), Positives = 106/176 (60%), Gaps = 3/176 (1%)
 Frame = +3

Query: 6   SLFRPVARVSAFNIYIPPNGTRNVSQLSREVPCTGPLVQATQPDISICRLLEGVCGEPLV 185
           S+ RP+ARVSAF++Y PP+G R  S  SR  P  GPLVQ ++P + +C+ LEGV  EP +
Sbjct: 210 SISRPMARVSAFSVYNPPSGLRVGSAFSRAAPMKGPLVQTSKPHLEVCKFLEGVYSEPTI 269

Query: 186 PSRCGHGCCGTKGERNPQSSLLGXXXXXXXXXXXXSSHELASIATDLSKIAWLKSGLENS 365
           P +CGHGCC        Q SLLG            SSHELASIA +L+ IAW+KSGL NS
Sbjct: 270 PLQCGHGCCEAPTGGQSQGSLLGPEFIEYMEPPPFSSHELASIAAELNSIAWIKSGLVNS 329

Query: 366 NTK---GNAGSSCVMPQGACLEMGNLKESRMNELMRFEEGRNRVMGLMTDVMSTQM 524
           ++      AG    M   A L+         NE +R EEGRN++MG+M +V+ TQM
Sbjct: 330 SSSMQDETAGQRLCMGAAAQLK---------NEHLRLEEGRNKLMGMMPEVLPTQM 376


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