BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00025386
         (992 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001103831.1| bifunctional ribonuclease H/phosphoglycerate...    59   2e-06
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    54   4e-06
gb|ABN08954.1| Ribonuclease H [Medicago truncatula]                    47   6e-06

>ref|YP_001103831.1| bifunctional ribonuclease H/phosphoglycerate mutase
           [Saccharopolyspora erythraea NRRL 2338]
           gi|291007551|ref|ZP_06565524.1| putative bifunctional
           protein (ribonuclease H/phosphoglycerate mutase)
           [Saccharopolyspora erythraea NRRL 2338]
           gi|133910793|emb|CAM00906.1| putative bifunctional
           protein (ribonuclease H/phosphoglycerate mutase)
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 366

 Score = 58.5 bits (140), Expect = 2e-06
 Identities = 34/77 (44%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
 Frame = +3

Query: 297 PGPAGWGTIFRKNT-GEVIGDYIGGLGIDTNYAAESRATVEGITKAIEMGYTKIWVELDS 473
           PGPAG G + R  T GEV+ +   GLG  TN AAE R  +EG++ A+E+G   I V +DS
Sbjct: 17  PGPAGCGAVVRDATSGEVLAERSVGLGTATNNAAEYRGLIEGLSAAVELGAEAIEVRMDS 76

Query: 474 TAAIKAFQTNSVHWKVK 524
              I+     +  WKVK
Sbjct: 77  KLVIEQM---AGRWKVK 90


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 53.5 bits (127), Expect(2) = 4e-06
 Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
 Frame = +3

Query: 285  GMVVPGPAGWGTIFRKNTGEVIGDYIGGLGIDTNYAAESRATVEGITKAIEMGYTKIWVE 464
            G VV G A  G +FR ++G  +G +   +G+ + + AE+ A +  +  A   G+  +W+E
Sbjct: 1029 GSVVGGLAACGGLFRDSSGSFLGAFSCNIGLASVFHAETLAFILALEHAAHHGWRNLWLE 1088

Query: 465  LDSTAAIKAFQTNS-VHWKVKADW 533
             DST+A+  F  +S V W ++  W
Sbjct: 1089 SDSTSALMIFSNSSLVQWLLRNRW 1112



 Score = 23.9 bits (50), Expect(2) = 4e-06
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 248  WTAPPPDFLKVNRDG 292
            W  P P  LKVN DG
Sbjct: 1015 WKNPSPPLLKVNTDG 1029


>gb|ABN08954.1| Ribonuclease H [Medicago truncatula]
          Length = 175

 Score = 47.0 bits (110), Expect(2) = 6e-06
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = +3

Query: 297 PGPAGWGTIFRKNTGEVIGDYIGGLGIDTNYAAESRATVEGITKAIEMGYTKIWVELDST 476
           P     G +FR      +G +   +G  T + AE  A +  I K+IE     IW+E DS 
Sbjct: 23  PSCGATGGVFRNWQTHSLGGFAQNIGHATCFKAELCAAIFAIEKSIEYNLRDIWLETDSK 82

Query: 477 AAIKAFQTNS-VHWKVKADWD 536
             +KAF ++  V W+++  W+
Sbjct: 83  LVVKAFSSSEHVPWQLRTRWN 103



 Score = 30.0 bits (66), Expect(2) = 6e-06
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = +2

Query: 530 LGLDQRKGMYSSHKHME**REANFGADLCAKKGATLTNGQKQRWENRPSF 679
           L L Q+     +H H    RE N GAD  AK G +L     Q W + P F
Sbjct: 106 LALAQKIKCVCTHIH----REGNAGADSLAKNGKSLALLTSQWWSSSPLF 151