BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00025384
         (493 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004159269.1| PREDICTED: DNA excision repair protein ERCC-...    81   1e-13
ref|XP_004143401.1| PREDICTED: DNA excision repair protein ERCC-...    81   1e-13
ref|XP_002516323.1| ATP binding protein, putative [Ricinus commu...    69   4e-10
ref|XP_002264260.1| PREDICTED: DNA excision repair protein ERCC-...    68   9e-10
ref|XP_002309928.1| chromatin remodeling complex subunit [Populu...    66   3e-09

>ref|XP_004159269.1| PREDICTED: DNA excision repair protein ERCC-6-like [Cucumis
           sativus]
          Length = 565

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 52/113 (46%), Positives = 63/113 (55%), Gaps = 2/113 (1%)
 Frame = +1

Query: 79  EEKPQKVKIEGRRRLCKVSSR--DVEENDDGAGFDGPNFSGIMDFDSPPMKIMDFDDSPP 252
           EEKP KVKI GRRRLCK+SSR  D  +N +G  F+ PNFSGI DFDSP         SPP
Sbjct: 39  EEKPTKVKINGRRRLCKLSSREDDCLDNPEGFYFNAPNFSGITDFDSP---------SPP 89

Query: 253 KNNLDYESPKTKTLNLDTPETKNVNLDSPESTIRDILDDLSSKLNYLSIEKKK 411
                             P     N  +  S IRDIL+DLS++L  LS+EK++
Sbjct: 90  ------------------PPLPVENRVNKGSEIRDILNDLSARLELLSVEKRR 124


>ref|XP_004143401.1| PREDICTED: DNA excision repair protein ERCC-6-like [Cucumis
           sativus]
          Length = 1016

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 52/113 (46%), Positives = 63/113 (55%), Gaps = 2/113 (1%)
 Frame = +1

Query: 79  EEKPQKVKIEGRRRLCKVSSR--DVEENDDGAGFDGPNFSGIMDFDSPPMKIMDFDDSPP 252
           EEKP KVKI GRRRLCK+SSR  D  +N +G  F+ PNFSGI DFDSP         SPP
Sbjct: 39  EEKPTKVKINGRRRLCKLSSRENDCLDNPEGFYFNAPNFSGITDFDSP---------SPP 89

Query: 253 KNNLDYESPKTKTLNLDTPETKNVNLDSPESTIRDILDDLSSKLNYLSIEKKK 411
                             P     N  +  S IRDIL+DLS++L  LS+EK++
Sbjct: 90  ------------------PPLPVENRVNKGSEIRDILNDLSARLELLSVEKRR 124


>ref|XP_002516323.1| ATP binding protein, putative [Ricinus communis]
           gi|223544553|gb|EEF46070.1| ATP binding protein,
           putative [Ricinus communis]
          Length = 1109

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 60/179 (33%), Positives = 79/179 (44%), Gaps = 31/179 (17%)
 Frame = +1

Query: 49  HNR----YSIPPS----------EEEKPQKVKIEGRRRLCKVSSRDVEENDDGAGFDGPN 186
           HNR    +S PP           EE KP K+K+EG RRLCK S+ D + N        P 
Sbjct: 18  HNRLLQEFSAPPKPEPSSFDEEGEEGKPSKIKLEGLRRLCKASAVDDDHNI-------PR 70

Query: 187 FSGIMDFDSPPMK----------------IMDFDDSPPKNNLDYESPKTKTLNLDTPETK 318
           F G+ DFDS   +                +   D+    +  D++SP            K
Sbjct: 71  FFGVTDFDSSSGRRRLCKLSSRDKENAGSVTAVDEPSFADITDFDSPLPSKAMAGGKSNK 130

Query: 319 NVNLDSPESTIRDILDDLSSKLNYLSIEKKKG-DKFEAGYETTLSSTKEESPVRNGDRK 492
           + N       I DILDDLSS+L+ LSIEKK+G DK   G         E  P R+G++K
Sbjct: 131 DAN------EIMDILDDLSSRLDLLSIEKKRGVDKAPDG-------PSELLPGRDGEKK 176


>ref|XP_002264260.1| PREDICTED: DNA excision repair protein ERCC-6-like [Vitis vinifera]
           gi|296088517|emb|CBI37508.3| unnamed protein product
           [Vitis vinifera]
          Length = 1043

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 49/127 (38%), Positives = 62/127 (48%), Gaps = 4/127 (3%)
 Frame = +1

Query: 52  NRYSIPPSE---EEKPQKVKIEGRRRLCKVSSRDVEEN-DDGAGFDGPNFSGIMDFDSPP 219
           + +  PP E   EEKP KVK++GRRRLCK+SS D +EN   G GF  P FS I DFDSP 
Sbjct: 48  SEFHSPPDEAKEEEKPVKVKLQGRRRLCKLSSNDDDENTKTGDGFYEPKFSEISDFDSP- 106

Query: 220 MKIMDFDDSPPKNNLDYESPKTKTLNLDTPETKNVNLDSPESTIRDILDDLSSKLNYLSI 399
                                            +   ++  + IR IL+DLSS+L  LSI
Sbjct: 107 ---------------------------------HHCSNAGGNEIRGILNDLSSRLESLSI 133

Query: 400 EKKKGDK 420
           E K+  K
Sbjct: 134 ETKRNPK 140


>ref|XP_002309928.1| chromatin remodeling complex subunit [Populus trichocarpa]
           gi|222852831|gb|EEE90378.1| chromatin remodeling complex
           subunit [Populus trichocarpa]
          Length = 1108

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 50/116 (43%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
 Frame = +1

Query: 76  EEEKPQKVKIEGRRRLCKVSSRDVEENDDGAGF---DGPNFSGIMDFDSP-PMKIMDFDD 243
           EEEKP KV+IEGRRRLCKVSS D  + DD +     D  +F  I DFDSP P K +    
Sbjct: 84  EEEKPTKVRIEGRRRLCKVSSGD--DGDDASREEVKDDSSFDDIADFDSPIPSKSVG--- 138

Query: 244 SPPKNNLDYESPKTKTLNLDTPETKNVNLDSPESTIRDILDDLSSKLNYLSIEKKK 411
                              D    K VN       I+DIL DL+S+L+ LSIEKK+
Sbjct: 139 -------------------DCGNNKGVN------EIKDILSDLTSRLDLLSIEKKR 169